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Source data of Mirtronstructdb - A comprehensive database of mirtrons with predicted secondary structure
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Raw Data Archive for "A New Cross-Calibration Algorithm for Multi-Mode Secondary Electron Multiplier Detectors"
<p>Raw Thermo Element XR data files for use with the Enhanced Linear Dynamic Range (ELDR) Model. The model inverts raw pulse and analog data from the Element 2/XR inductively coupled plasma mass spectrometer to estimate detector cross-calibration, linear-in-time cross-calibration drift, and detector non-linearity. This data archive contains the raw data comprising 1572 individual laser ablation analyses. Each analysis consists of two files: (1) raw data archive (.dat); and (2) setup information file <em>(</em>.inf). The analytical session is divided into three sequences: SEQ1, SEQ2, SEQ3.</p> <p> </p>
Bacteria associated with a toxic bird secrete protective secondary metabolites
<p>Here, we describe two unreported compound families from an Amycolatopsis species isolated from <em>P. schlegelii. </em></p> <p>Uploaded data contains NMR, HRMS/MS data as well as pictures of co-cultures and molecular biological experiments.</p>
FIGURE 6 in Description of three species of Eurypon Gray, 1867 (Raspailiidae: Demospongiae: Porifera) from the Western Atlantic and a name to replace the the secondary homonym Eurypon topsenti
FIGURE 6. Eurypon verticillatum sp. nov. (UFPEPOR 1966, holotype). A, specimen in vivo; B, close up of sponge surface; C, thick section showing ectosome and choanosome. Scale bars: A = 2 cm; B = 5 mm; C = 700 µm.
FIGURE 2 in Description of three species of Eurypon Gray, 1867 (Raspailiidae: Demospongiae: Porifera) from the Western Atlantic and a name to replace the the secondary homonym Eurypon topsenti
FIGURE 2. Eurypon oxychaetum sp. nov. (UFPEPOR 3007, holotype). A, preserved specimen; B, close up of sponge surface; C, thick section showing ectosome and choanosome. Scale bars: A = 2 cm; B = 5 mm; C = 500 µm.
FIGURE 5 in Description of three species of Eurypon Gray, 1867 (Raspailiidae: Demospongiae: Porifera) from the Western Atlantic and a name to replace the the secondary homonym Eurypon topsenti
FIGURE 5. Spicule complement of Eurypon potiguaris sp. nov. (UFPEPOR 1949, holotype) in SEM. A, choanosomal tylostyles; B, tylostyles details; C, size variation of oxeas; D, oxea details; E, size variation of acanthostyles I; F, acanthostyles I details; G, acanthostyles II; H, acanthostyles II details. Scale bars: A = 500 µm; B, F–G = 20 µm; C, E = 50 µm; D, H = 10 µm.
FIGURE 1 in Description of three species of Eurypon Gray, 1867 (Raspailiidae: Demospongiae: Porifera) from the Western Atlantic and a name to replace the the secondary homonym Eurypon topsenti
FIGURE 1. Location of study area and collection sites of Eurypon species, (1) Eurypon verticillatum sp. nov. (Pernambuco State); (2) (3) Eurypon oxychaetum sp. nov. (Paraíba State); (4) Eurypon potiguaris sp. nov. (Rio Grande do Norte State). Abbreviations are: AL = Alagoas State; BA = Bahia State; CE = Ceará State; PB = Paraíba State; PE = Pernambuco State; RN = Rio Grande do Norte State.
FIGURE 4 in Description of three species of Eurypon Gray, 1867 (Raspailiidae: Demospongiae: Porifera) from the Western Atlantic and a name to replace the the secondary homonym Eurypon topsenti
FIGURE 4. Eurypon potiguaris sp. nov. (UFPEPOR 1949, holotype). A, preserved specimen; B, close up of sponge surface. Scale bars: A = 2 cm; B = 2 mm.
FIGURE 3 in Description of three species of Eurypon Gray, 1867 (Raspailiidae: Demospongiae: Porifera) from the Western Atlantic and a name to replace the the secondary homonym Eurypon topsenti
FIGURE 3. Spicule complement of Eurypon oxychaetum sp. nov. (UFPEPOR 3007, holotype) in SEM. A, choanosomal subtylostyles; B, subtylostyles details; C, subectosomal styles; D, styles details; E, oxychaetes; F, oxychaetes details; G, acanthostyles I; H, acanthostyles I details; I, acanthostyles II; J, acanthostyles II details. Scale bars: A = 500 µm; B = 40 µm; C = 100 µm; D, H, J = 10 µm; E, I = 20 µm; F = 4 µm; G = 50 µm.
FIGURE 7 in Description of three species of Eurypon Gray, 1867 (Raspailiidae: Demospongiae: Porifera) from the Western Atlantic and a name to replace the the secondary homonym Eurypon topsenti
FIGURE 7. Spicule complement of Eurypon verticillatum sp. nov. (UFPEPOR 1966, holotype) in SEM. A, choanosomal tylostyles; B, tylostyles details; C, size variation of acanthostyles I; D, acanthostyles I and details of verticillate spines (arrows); E, size variation of acanthostyles II; F, acanthostyles II details and details of verticillate spines (arrows); G, raphides. Scale bars: A = 200 µm; B, D = 10 µm; C = 50 µm; E = 20 µm; F–G = 5 µm.
Exploration of the influence of environmental conditions on secondary organic aerosol formation and organic species properties using explicit simulations: development of the VBS-GECKO parameterization [Dataset]
<p>This dataset is composed of simulation outputs of the GECKO-A model that were used to optimize the VBS-GECKO SOA parameterization as described in the study :<br> <br> Lannuque, V., Camredon, M., Couvidat, F., Hodzic, A., Valorso, R., Madronich, S., Bessagnet, B., and Aumont, B.: Exploration of the influence of environmental conditions on secondary organic aerosol formation and organic species properties using explicit simulations: development of the VBS-GECKO parameterization, Atmos. Chem. Phys., https://doi.org/10.5194/acp-18-1-2018, 2018.<br> <br> <strong>Please cite the original ACP article when using these data in a publication.</strong></p> <p><br> The paper also contains more information about how these data were obtained.<br> <br> The "readme.txt" file gives quick explanations on how the dataset is formatted and how to read the different files that compose it.<br> <br> Victor Lannuque</p>
Inducibility of plant secondary metabolites predicts genetic variation in resistance against a key insect herbivore in maritime pine
<p>SNP dataset in maritime pine (<em>Pinus pinaster</em>) together with the population structure (<em>Q</em>) and kinship (<em>K</em>) matrices.</p>
FIGURE 2. Predicted secondary structures for 22 in The complete mitochondrial genome of the jumping grasshopper Sinopodisma pieli (Orthoptera: Acrididae) and the phylogenetic analysis of Melanoplinae
FIGURE 2. Predicted secondary structures for 22 tRNA genes of the S. pieli mitogenome. The tRNAs are labeled with the abbreviations of their corresponding amino acids. The minus sign (-) indicates Watson-Crick base pairing and plus sign (.) indicates G-U base pairing.
Secondary organic aerosol formation from smoldering and flaming combustion of biomass: a box model parametrization based on volatility basis set
<p>Here, we studied the aging of emissions from flaming and smoldering-dominated wood fires in three different residential stoves, across a wide range of aging temperatures (-10°C, 2°C and 15°C) and emission loads. Organic gases (OGs) acting as SOA precursors were monitored by a proton transfer reaction time-of-flight mass spectrometer (PTR-TOF-MS), while the evolution 10 of the aerosol properties during aging in the smog chamber was monitored by a high resolution time-of-flight aerosol mass spectrometer (HR-ToF-AMS). We developed a novel box model based on the volatility basis set (VBS) to determine the volatility distributions of the oxidation products from different precursor classes found in the emissions, grouped according to their emission pathways and SOA production rates.</p>
FIGURE 7 in A new species of Ungla (Neuroptera: Chrysopidae) that exhibits remarkable homoplasy in male secondary sexual characters
FIGURE 7. Ungla pseudomeleoma, sp. nov., Paratype, cleared abdomen (female, Peru: La Libertad, TRC). A. Terminal segments of abdomen (lateral); B. Fused ninth tergite and ectoproct (lateral); C, D. Spermathecal complex; E, F. Spermathecal complex and subgenitale. c.c., callus cerci; g.l. gonapophysis lateralis; inv, spermathecal invagination; pouch, pouch at base of subgenitale; sg, subgenitale; sm, spermatheca; sm.d., spermathecal duct; sm.d.(b), sm.d.(d), basal, distal sections of spermathecal duct; S7, seventh sternite; T7, T8, seventh, eighth tergites; T9+e, fused ninth tergite and ectoproct; vel, spermathecal vellum.
FIGURE 8 in A new species of Ungla (Neuroptera: Chrysopidae) that exhibits remarkable homoplasy in male secondary sexual characters
FIGURE 8. Similarity in the antennal features of Ungla pseudomeleoma with those of three species of Meleoma. A. Ungla pseudomeleoma, sp. nov., Holotype (Peru: La Libertad, FSCA); B. Meleoma emuncta Fitch (USA: California, TRC); C. Meleoma undescribed sp. #1 (USA: Arizona, TRC); D. Meleoma stangei Penny (Mexico: Baja California, San Diego County Museum of Natural History). f1, first flagellomere; h, horn extending from scape; ped, pedicel; sc, scape.
FIGURE 2 in A new species of Ungla (Neuroptera: Chrysopidae) that exhibits remarkable homoplasy in male secondary sexual characters
FIGURE 2. Ungla pseudomeleoma, sp. nov., Paratypes (female, Peru: La Libertad). A. Head, frontal (FSCA); B. Head, prothorax (dorsal, FSCA); C. Head, prothorax, mesothorax (dorsal, TRC); D. Antenna (FSCA). f1, first flagellomere; in.fu., interantennal furrow; in.h., interantennal horn; ped, pedicel; sc, scape; tor, torulus..
FIGURE 6 in A new species of Ungla (Neuroptera: Chrysopidae) that exhibits remarkable homoplasy in male secondary sexual characters
FIGURE 6. Ungla pseudomeleoma, sp. nov., Holotype, genitalia (male, Peru: La Libertad, FSCA). A. Gonarcal complex (anterolateral); B. Gonarcus (posterodorsal); C. Gonarcal complex (frontal); D. gonarcus (caudal); E. Gonarcal complex (frontoventral). c, comes; gsac, gonosaccus; g.ap., gonarcal apodeme; g.br., gonarcal bridge; h.i., hypandrium internum; mu, mediuncus; pr, unarticulated process on frontal margin of gonarcal apodeme; s.p., setose subanal plate; s.pl., paired setose plate of gonosaccus.
FIGURE 5 in A new species of Ungla (Neuroptera: Chrysopidae) that exhibits remarkable homoplasy in male secondary sexual characters
FIGURE 5. Ungla pseudomeleoma, sp. nov., Holotype, cleared abdomen (male, Peru: La Libertad, FSCA). A. Abdomen (lateral); B. Abdominal terminus (lateral); C. Terminal abdominal segments and genitalia (lateral); D. Fused ninth tergite and ectoproct (dorsal); E. Fused eighth and ninth sternites (ventral, suture on dorsal integument between T8 and T9 visible). c.c., callus cerci; g.ap., gonarcal apodeme; g.br., gonarcal bridge; inv, invaginated dorsal cleft in T9+e, above anus; S3, third sternite; S8+9, fused eighth and ninth sternites, s.p., setose subanal plate; sp, spiracular opening; T4, T6, T8, T9, fourth, sixth, eighth, ninth tergites; T9+e, fused ninth tergite and ectoproct.
FIGURE 4 in A new species of Ungla (Neuroptera: Chrysopidae) that exhibits remarkable homoplasy in male secondary sexual characters
FIGURE 4. Ungla pseudomeleoma, sp. nov., Paratype (female, Peru: La Libertad, TRC). Wings. A. Forewing B. Hindwing. b2, b3, second, third upper Banksian cells (cells below RP that do not include a gradate vein); b'2, b'4, second, fourth lower Banksian cells (cells between Psm and Psc; gc3, third gradate cell (cell with inner and outer gradates at the two ends); icu1, first intracubital cell; 1ig, first inner gradate vein, im1, first intramedian cell; Psc, Pseudocubitus; Psm, Pseudomedius; rarp1, rarp9, first, ninth closed cells between RA and RP; RA, anterior branch of Radius; RP, posterior branch of Radius.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.