Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
975
datasets available to search
ShareScore release 0.9.0
Dataset results
975 results for “Spatial transcriptomics”
Spatial transcriptomic profiling of signet ring cell precursors of diffuse-type gastric cancer
GEO Series GSE289923. Homo sapiens. 96 samples. Type: Other.
Visium Spatial transcriptomics analysis of human primary colorectal cancer
GEO Series GSE226997. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
spatial transcriptome
GEO Series GSE160621. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics [Omni-ATACseq]
GEO Series GSE141584. Drosophila melanogaster. 14 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Desmosome mutations impact the tumor microenvironment to promote melanoma proliferation [Spatial transcriptomics]
GEO Series GSE291159. Homo sapiens. 49 samples. Type: Other.
Spatial transcriptome reveals disturbance of peri-infundibular immune infiltration in androgenetic alopecia
GEO Series GSE240637. Homo sapiens. 5 samples. Type: Expression profiling by high throughput sequencing; Other.
Multimodal spatial transcriptomic characterization of mouse kidney injury and repair
GEO Series GSE269884. Mus musculus. 18 samples. Type: Other.
Multi-resolution deconvolution of spatial transcriptomics data reveals continuous patterns of inflammation (scRNA-Seq)
GEO Series GSE173774. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
Spatial Transcriptomics of IPMN Reveals Divergent Indolent and Malignant Progenitor Phenotypes
GEO Series GSE278670. Homo sapiens; blank sample. 191 samples. Type: Other.
Spatially resolved whole transcriptome profiling in human and mouse tissue using Digital Spatial Profiling [human cell pellet array]
GEO Series GSE186714. Homo sapiens. 36 samples. Type: Other.
Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics
GEO Series GSE265819. Mus musculus. 16 samples. Type: Expression profiling by high throughput sequencing.
Spatial Transcriptomic Profiling of the Human Fallopian Tube Epithelium Reveals Region-specific Gene Expression Patterns
GEO Series GSE290051. Homo sapiens. 209 samples. Type: Other.
Dual and spatially resolved drought responses in the Arabidopsis leaf mesophyll revealed by single-cell transcriptomics
GEO Series GSE273926. Arabidopsis thaliana. 14 samples. Type: Expression profiling by high throughput sequencing.
Spatial transcriptome sequencing of the rat corpus cavernosum with normal erectile function
GEO Series GSE261487. Rattus norvegicus. 1 samples. Type: Other.
Spatial transcriptomic analysis of human oligodendrocyte development across gestational weeks 10 to 24
GEO Series GSE213306. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing; Other.
Discovering Molecular Signatures in ATMR: Single-cell RNA Sequencing Analysis of Human Blood and Tissue Spatial Transcriptomics [Spatial Transcriptomics]
GEO Series GSE248787. Homo sapiens. 24 samples. Type: Other.
Spatial transcriptomics and single-nucleus RNA-sequencing reveal a transcriptomic atlas of human spinal cord [Spinal snRNA-seq]
GEO Series GSE243076. Homo sapiens. 9 samples. Type: Expression profiling by high throughput sequencing.
Spatially resolved whole transcriptome profiling in human and mouse tissue using Digital Spatial Profiling [mouse cell pellet array]
GEO Series GSE187000. Mus musculus. 71 samples. Type: Other.
Spatially Resolved Transcriptomics Deconvolutes Histological Prognostic Subgroups in Patients with Colorectal Cancer and Synchronous Liver Metastases
GEO Series GSE224235. Homo sapiens. 17 samples. Type: Expression profiling by array.
Spatial transcriptomic data of P5 mouse cortical somatostatin neurons
GEO Series GSE247005. Mus musculus; Mus. 16 samples. Type: Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.