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zenodo28/100

Figure 6 from: Toro R, Bakker R, Delzescaux T, Evans A, Tiesinga P (2018) FIIND: Ferret Interactive Integrated Neurodevelopment Atlas. Research Ideas and Outcomes 4: e25312. https://doi.org/10.3897/rio.4.e25312

Figure 6 Gantt Chart showing the 3 Work Packages, its Tasks (blue bars) and Milestones (red diamonds).

opencc-by-4.0Apr 2018View details →
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Figure 3 from: Minelli A, Oggioni A, Pugnetti A, Sarretta A, Bastianini M, Bergami C, Bernardi Aubry F, Camatti E, Scovacricchi T, Socal G (2018) The project EcoNAOS: vision and practice towards an open approach in the Northern Adriatic Sea ecological observatory. Research Ideas and Outcomes 4: e24224. https://doi.org/10.3897/rio.4.e24224

Figure 3 The spiral model - an open research lifecycle involves sharing of each step of the process, including not only scientific papers but also research ideas, data (raw and processed), metadata, methods, software (Minelli et al. 2017).

opencc-by-4.0Apr 2018View details →
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Figure 1 from: Garzon-Lopez C, Hattab T, Skowronek S, Aerts R, Ewald M, Feilhauer H, Honnay O, Decocq G, Van De Kerchove R, Somers B, Schmidtlein S, Rocchini D, Lenoir J (2018) The DIARS toolbox: a spatially explicit approach to monitor alien plant invasions through remote sensing. Research Ideas and Outcomes 4: e25301. https://doi.org/10.3897/rio.4.e25301

Figure 1 DIARS toolbox workflow. The green gears correspond to the sections of the toolbox and are accompanied by boxes stating its main goal. The gray gears describe the advantages of the DIARS toolbox.

opencc-by-4.0Apr 2018View details →
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Figure 3 from: Toro R, Bakker R, Delzescaux T, Evans A, Tiesinga P (2018) FIIND: Ferret Interactive Integrated Neurodevelopment Atlas. Research Ideas and Outcomes 4: e25312. https://doi.org/10.3897/rio.4.e25312

Figure 3 Collaborative online brain segmentation. Example from Brain Catalogue. The interface allows users to interact in real time to segment MRI data (here, segmentation of the neocortex). Users see each other working, and can discuss via chat.

opencc-by-4.0Apr 2018View details →
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Figure 4a from: Minelli A, Oggioni A, Pugnetti A, Sarretta A, Bastianini M, Bergami C, Bernardi Aubry F, Camatti E, Scovacricchi T, Socal G (2018) The project EcoNAOS: vision and practice towards an open approach in the Northern Adriatic Sea ecological observatory. Research Ideas and Outcomes 4: e24224. https://doi.org/10.3897/rio.4.e24224

Figure 4a An extract from data collected since 1965 to today in the NAS. - snapshot of the organization of the main table of data

opencc-by-4.0Apr 2018View details →
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Figure 2 from: Amosu A, Mahmood H, Ofoche P (2018) Estimating the Permeability of Carbonate Rocks from the Fractal Properties of Moldic Pores using the Kozeny-Carman Equation. Research Ideas and Outcomes 4: e24430. https://doi.org/10.3897/rio.4.e24430

Figure 2 Figure showing the application of the pigeonhole fractal model to the pore spaces in the thin-section photomicrograph.

opencc-by-4.0Apr 2018View details →
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Figure 5 from: Garzon-Lopez C, Hattab T, Skowronek S, Aerts R, Ewald M, Feilhauer H, Honnay O, Decocq G, Van De Kerchove R, Somers B, Schmidtlein S, Rocchini D, Lenoir J (2018) The DIARS toolbox: a spatially explicit approach to monitor alien plant invasions through remote sensing. Research Ideas and Outcomes 4: e25301. https://doi.org/10.3897/rio.4.e25301

Figure 5 Some examples of reconstructed images: A. Sylt island reconstructed image and plot locations (wavelengths: 170R, 65G, 17B). B. Compiègne Forest reconstructed image and plot locations (wavelengths: 207R, 65G, 10B).

opencc-by-4.0Apr 2018View details →
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Figure 2 from: Toro R, Bakker R, Delzescaux T, Evans A, Tiesinga P (2018) FIIND: Ferret Interactive Integrated Neurodevelopment Atlas. Research Ideas and Outcomes 4: e25312. https://doi.org/10.3897/rio.4.e25312

Figure 2 Ferret MRI project. Example web page for an adult ferret brain, out of 24 specimens made available. Each page has an interactive stereotaxic viewer and 3D surface reconstruction.

opencc-by-4.0Apr 2018View details →
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Figure 1 from: Minelli A, Oggioni A, Pugnetti A, Sarretta A, Bastianini M, Bergami C, Bernardi Aubry F, Camatti E, Scovacricchi T, Socal G (2018) The project EcoNAOS: vision and practice towards an open approach in the Northern Adriatic Sea ecological observatory. Research Ideas and Outcomes 4: e24224. https://doi.org/10.3897/rio.4.e24224

Figure 1 The LTER-Italy parent site "Northern Adriatic Sea". The four research sites that compose it, together with the fixed point observatories, are evidenced. 1: Gulf of Trieste and Mambo buoy, 2: Gulf of Venice and Acqua Alta Tower, 3: Po Delta and Romagna Coast and S1-GB and E1 buoys, 4: Senigallia-Susak Transect and TeleSenigallia Pylon (Minelli et al. 2018)

opencc-by-4.0Apr 2018View details →
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Figure 4c from: Minelli A, Oggioni A, Pugnetti A, Sarretta A, Bastianini M, Bergami C, Bernardi Aubry F, Camatti E, Scovacricchi T, Socal G (2018) The project EcoNAOS: vision and practice towards an open approach in the Northern Adriatic Sea ecological observatory. Research Ideas and Outcomes 4: e24224. https://doi.org/10.3897/rio.4.e24224

Figure 4c An extract from data collected since 1965 to today in the NAS. - 3D visualization of data from the viewpoint in b: the yellow grid represents the sea level, each set of vertical points represents more samplings relying on the same (X, Y) coordinates but at different depths (Z)

opencc-by-4.0Apr 2018View details →
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Figure 3 from: Garzon-Lopez C, Hattab T, Skowronek S, Aerts R, Ewald M, Feilhauer H, Honnay O, Decocq G, Van De Kerchove R, Somers B, Schmidtlein S, Rocchini D, Lenoir J (2018) The DIARS toolbox: a spatially explicit approach to monitor alien plant invasions through remote sensing. Research Ideas and Outcomes 4: e25301. https://doi.org/10.3897/rio.4.e25301

Figure 3 Example of the workflow used for the mapping of alien plants. The same approach was used for all the tutorials.

opencc-by-4.0Apr 2018View details →
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Figure 4b from: Minelli A, Oggioni A, Pugnetti A, Sarretta A, Bastianini M, Bergami C, Bernardi Aubry F, Camatti E, Scovacricchi T, Socal G (2018) The project EcoNAOS: vision and practice towards an open approach in the Northern Adriatic Sea ecological observatory. Research Ideas and Outcomes 4: e24224. https://doi.org/10.3897/rio.4.e24224

Figure 4b An extract from data collected since 1965 to today in the NAS. - 2D visualization of custom sampling stations (used from 1965 to 1990, before GPS advent) and real sampling points (until 2015)

opencc-by-4.0Apr 2018View details →
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Figure 4 from: Toro R, Bakker R, Delzescaux T, Evans A, Tiesinga P (2018) FIIND: Ferret Interactive Integrated Neurodevelopment Atlas. Research Ideas and Outcomes 4: e25312. https://doi.org/10.3897/rio.4.e25312

Figure 4 Deep-zoom viewer. Functional prototype of a deep zoom viewer for histology data, with slice navigator, scale bar, vectorial overlay, and contact strip to select among several slices. Histology data obtained from the Allen Institute for Brain Research.

opencc-by-4.0Apr 2018View details →
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Figure 1 from: Toro R, Bakker R, Delzescaux T, Evans A, Tiesinga P (2018) FIIND: Ferret Interactive Integrated Neurodevelopment Atlas. Research Ideas and Outcomes 4: e25312. https://doi.org/10.3897/rio.4.e25312

Figure 1 Ferret brain development. (1) Quantitative T2 MRI. (2) Surface reconstructions. The ferret brain is smooth at birth. Brain folding develops during the 1st 2 postnatal weeks.

opencc-by-4.0Apr 2018View details →
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Supplementary material 1 from: Borghi J, Abrams S, Lowenberg D, Simms S, Chodacki J (2018) Support Your Data: A Research Data Management Guide for Researchers. Research Ideas and Outcomes 4: e26439. https://doi.org/10.3897/rio.4.e26439

A formatted version of the Support Your Data RDM rubric.

opencc-zeroMay 2018View details →
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Figure 1 from: Underwood E, Taylor K, Tucker G (2018) The use of biodiversity data in spatial planning and impact assessment in Europe. Research Ideas and Outcomes 4: e28045. https://doi.org/10.3897/rio.4.e28045

Figure 1 Data use within the EIA process Own compilation based on information in (King et al. 2012).

opencc-by-4.0Jul 2018View details →
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Supplementary material 2 from: Cole MW (2018) Effectiveness of peer-mediated learning for English language learners: A meta-analysis. Research Ideas and Outcomes 4: e29375. https://doi.org/10.3897/rio.4.e29375

These are studies that were potentially-relevant to the meta-anlayses, but that were ultimately excluded during inclusion coding. Future researchers might find this list especially valuable.

opencc-zeroSep 2018View details →
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Figure 11 from: Mingorance Gámez C (2018) Epigenetic function of Granulocytic nuclei? Designing a new line of research. Research Ideas and Outcomes 4: e29438. https://doi.org/10.3897/rio.4.e29438

Figure 11 Protein transcription factors would be synthesised in the cytoplasm, so their genes can be in any lobe. Their presence in each lobe would depend on the properties of its nuclear pores. In the image, red pore complexes would reject the factor while the blue ones facilitate their importation into the lobe.

opencc-by-4.0Oct 2018View details →
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Figure 6 from: Mingorance Gámez C (2018) Epigenetic function of Granulocytic nuclei? Designing a new line of research. Research Ideas and Outcomes 4: e29438. https://doi.org/10.3897/rio.4.e29438

Figure 6 Probability of finding each distribution of the alleles in a neutrophil with four lobes through the microscope, assuming an independent pattern (A, assuming an equal chance for all lobes), pattern of interdependent location independent of lobe (B) or pattern of interdependent location in a fixed lobe (C). In B, we find two distributions with the shown proportions (either the two on the left or the four on the right) and the other distributions have a probability of 0%. In C, one of the distributions would be present in 100% of the cells while the others would not appear.

opencc-by-4.0Oct 2018View details →
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Figure 5 from: Mingorance Gámez C (2018) Epigenetic function of Granulocytic nuclei? Designing a new line of research. Research Ideas and Outcomes 4: e29438. https://doi.org/10.3897/rio.4.e29438

Figure 5 Probability of finding each distribution of the alleles in a neutrophil with three lobes through the microscope, assuming an independent pattern (A, assuming an equal chance for all lobes), pattern of interdependent location independent of lobe (B) or pattern of interdependent location in a fixed lobe (C). In B, we find two distributions with the shown proportions (either the two on the left or the two on the right) and the other two distributions have a probability of 0%. In C, one of the distributions would be present in 100% of the cells while the others would not appear.

opencc-by-4.0Oct 2018View details →

ScienceDex guides

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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record