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Fig. 3. The contact region. Numbers designate collecting sites. Compare with figure 49 in Hybridization Among Western Whiptail Lizards (Cnemidophorus Tigris) In Southwestern New Mexico: Population Genetics, Morphology, And Ecology In Three Contact Zones
Fig. 3. The contact region. Numbers designate collecting sites. Compare with figure 49.
FIGURE 15 in Laboratory Hybridization among North American Whiptail Lizards, Including Aspidoscelis inornata arizonae × A. tigris marmorata (Squamata: Teiidae), Ancestors of Unisexual Clones in Nature
FIGURE 15. The oviduct (part) and ovary of laboratory hybrid AMNH
FIGURE 14 in Laboratory Hybridization among North American Whiptail Lizards, Including Aspidoscelis inornata arizonae × A. tigris marmorata (Squamata: Teiidae), Ancestors of Unisexual Clones in Nature
FIGURE 14. Volume of the adrenal gland compared to the snout-vent length (SVL)
FIGURE 17 in Laboratory Hybridization among North American Whiptail Lizards, Including Aspidoscelis inornata arizonae × A. tigris marmorata (Squamata: Teiidae), Ancestors of Unisexual Clones in Nature
FIGURE 17. Mesonephros of laboratory hybrid
FIGURE 10 in Laboratory Hybridization among North American Whiptail Lizards, Including Aspidoscelis inornata arizonae × A. tigris marmorata (Squamata: Teiidae), Ancestors of Unisexual Clones in Nature
FIGURE 10. Testis, adrenal gland,
FIGURE 4 in Laboratory Hybridization among North American Whiptail Lizards, Including Aspidoscelis inornata arizonae × A. tigris marmorata (Squamata: Teiidae), Ancestors of Unisexual Clones in Nature
FIGURE 4. Three Aspidoscelis of
FIGURE 3 in Laboratory Hybridization among North American Whiptail Lizards, Including Aspidoscelis inornata arizonae × A. tigris marmorata (Squamata: Teiidae), Ancestors of Unisexual Clones in Nature
FIGURE 3. Parents of the Aspidoscelis hybrids
FIGURE 16 in Laboratory Hybridization among North American Whiptail Lizards, Including Aspidoscelis inornata arizonae × A. tigris marmorata (Squamata: Teiidae), Ancestors of Unisexual Clones in Nature
FIGURE 16. The testis of laboratory
Fig. 3 in Natural Hybridization Between the Teiid Lizards Cnemidophorus tesselatus (Parthenogenetic) and C. tigris marmoratus (Bisexual): Assessment of Evolutionary Alternatives
Fig. 3. Ventral view of the same lizards arranged in the same sequence as in figure 2.
Fig. 9 in Hybridization Between the Endangered Unisexual Gray-Checkered Whiptail Lizard (Aspidoscelis dixoni) and the Bisexual Western Whiptail Lizard (Aspidoscelis tigris) in Southwestern New Mexico
Fig. 9. Antelope Pass, Peloncillo Mountains, Hidalgo County, New Mexico. Photo by C.W.P., April 1,
Data from: Hybridization alters growth and migratory life history expression of native trout
<p><span><span><span><span><span><span><span><span><span><span><span>Human-mediated hybridization threatens many native species, but the effects of introgressive hybridization on life history expression are rarely quantified, especially in vertebrates. We quantified the effects of non-native rainbow trout admixture on important life history traits including growth and partial migration behavior in three populations of westslope cutthroat trout over five years. Rainbow trout admixture was associated with increased summer growth rates in all populations, and decreased spring growth rates in two populations with cooler spring temperatures. These results indicate that non-native admixture may increase growth under warmer conditions, but cutthroat trout have higher growth rates during cooler periods. Non-native admixture consistently increased expression of migratory behavior, suggesting that there is a genomic basis for life history differences between these species. Our results show that effects of interspecific hybridization on fitness traits can be the product of genotype-by-environment interactions even when there are minor differences in environmental optima between hybridizing species. These results also indicate that while environmentally mediated traits like growth may play a role in population-level consequences of admixture, strong genetic influences on migratory life history differences between these species likely explains the continued spread of non-native hybridization at the landscape-level, despite selection against hybrids at the population-level.</span></span></span></span></span></span></span></span></span></span></span></p>
Real-time geographic settling of a hybrid zone between the invasive winter moth (Operophtera brumata L.) and the native Bruce spanworm (O. bruceata Hulst)
<p>Hybridization plays an important and underappreciated role in shaping the evolutionary trajectories of species. Following the introduction of a non-native organism to a novel habitat, hybridization with a native congener may affect the probability of establishment of the introduced species. In most documented cases of hybridization between a native and a non-native species, a mosaic hybrid zone is formed, with hybridization occurring heterogeneously across the landscape. In contrast, most naturally occurring hybrid zones are clinal in structure. Here we report on a long-term microsatellite dataset that monitored hybridization between the invasive winter moth, <i>Operophtera brumata </i>(Lepidoptera: Geometridae), and the native Bruce spanworm, <i>O. bruceata, </i>over a 12-year period. Our results document one of the first examples of the real-time formation and geographic settling of a clinal hybrid zone. In addition, by comparing one transect in Massachusetts where extreme winter cold temperatures have been hypothesized to restrict the distribution of winter moth, and one in coastal Connecticut, where winter temperatures are moderated by Long Island Sound, we<i> </i>find that the location of the hybrid zone appears to be independent of environmental variables and maintained under a tension model wherein the stability of the hybrid zone is constrained by population density, reduced hybrid fitness, and low dispersal rates. Documenting the formation of a contemporary clinal hybrid zone may provide important insights into the factors that shaped other well-established hybrid zones.</p>
Changes in selection pressure can facilitate hybridization during biological invasion in a Cuban lizard
<p>Hybridization is among the evolutionary mechanisms most frequently hypothesized to drive the success of invasive species, in part because hybrids are common in invasive populations. One explanation for this pattern is that biological invasions coincide with a change in selection pressures that limit hybridization in the native range. To investigate this possibility, we studied the introduction of the brown anole (<i>Anolis sagrei</i>) in the southeastern United States. We find that native populations are highly genetically structured. In contrast, all invasive populations show evidence of hybridization among native-range lineages. Temporal sampling in the invasive range spanning 15 years showed that invasive genetic structure has stabilized, indicating that large-scale contemporary gene flow is limited among invasive populations and that hybrid ancestry is maintained. Additionally, our results are consistent with hybrid persistence in invasive populations resulting from changes in natural selection that occurred during invasion. Specifically, we identify a large-effect X chromosome locus associated with variation in limb length, a well-known adaptive trait in anoles, and show that this locus is often under selection in the native range, but rarely so in the invasive range. Moreover, we find that the effect size of alleles at this locus on limb length is much reduced in hybrids among divergent lineages, consistent with epistatic interactions. Thus, in the native range, epistasis manifested in hybrids can strengthen extrinsic post-mating isolation. Together, our findings show how a change in natural selection can contribute to an increase in hybridization in invasive populations.</p>
MLR - Mapping Collaboration Challenges in Hybrid Working Environments of Information Technology Teams
<p> Supplementary artifact for Mapping Collaboration Challenges in Hybrid Working Environments of Information Technology Teams</p>
Supporting Information for the Journal Article "Automated Construction of Quantum–Classical Hybrid Models"
<p>This dataset contains the supporting information published together with the article "Automated Construction of Quantum–Classical Hybrid Models" (<a href="https://doi.org/10.1021/acs.jctc.1c00178"><em>J. Chem. Theory Comput.</em>, <strong>2022</strong>, <em>17</em>, 3797</a>).</p>
Contrasting levels of hybridization across the two contact zones between two hedgehog species revealed by genome-wide SNP data
<p>Hybridization and introgression have played important roles in the history of various species, including lineage diversification and the evolution of adaptive traits. Hybridization can accelerate the development of reproductive isolation between diverging species, and thus valuable insight into the evolution of reproductive barrier formation may be gained by studying secondary contact zones. Hedgehogs of the genus <em>Erinaceus</em>, which are insectivores sensitive to changes in climate, are a pioneer model in Pleistocene phylogeography. The present study provides the first genome-wide SNP data regarding the <em>Erinaceus</em> hedgehogs species complex, offering a unique comparison of two secondary contact zones between <em>Erinaceus</em> <em>europaeus</em> and <em>E</em>. <em>roumanicus</em>. Results confirmed diversification of the genus during the Pleistocene period and detected a new refugial lineage of <em>E</em>. <em>roumanicus</em> outside the Mediterranean region, most likely in the Ponto-Caspian region. In the Central European zone, the level of hybridization was low, whereas in the Russian-Baltic zone, both species hybridise extensively. Asymmetrical gene flow from <em>E</em>. <em>europaeus</em> to <em>E</em>. <em>roumanicus</em> suggests that reproductive isolation varies according to the direction of the crosses in the hybrid zones. However, no loci with significantly different patterns of introgression were detected. Markedly different pre- and post-zygotic barriers, and thus diverse modes of species boundary maintenance in the two contact zones, likely exist. This pattern is probably a consequence of the different ages and thus of the different stages of evolution of reproductive isolating mechanisms in each hybrid zone.</p>
Mitochondrial DNA assay of 63 Chinook-Coho salmon hybrids
<p>Mitochondrial DNA sequences can identify the maternal species involved in hybridization events and provide behavioural clues of the matings. In this study, Mitochondrial DNA indicated hybrids were the offspring of female Coho salmon spawning with Chinook salmon males (all but two individuals from a reciprocal cross). This finding suggested two possible scenarios: accidental fertilization in crowded spawning grounds or heterospecific choice of mate when conspecifics were not available (e.g. differential abundance).</p>
Data from: Phylogeography, hybridization, and species discovery in the Etheostoma nigrum complex (Percidae: Etheostoma: Boleosoma)
<p class="MsoNormal">The history of riverine fish diversification is largely a product of geographic isolation. Physical barriers that reduce or eliminate gene flow between populations facilitate divergence via genetic drift and natural selection, eventually leading to speciation. For freshwater organisms, diversification is often the product of drainage basin rearrangements. In young clades where the history of isolation is the most recent, evolutionary relationships can resemble a tangled web. One especially recalcitrant group of freshwater fishes is the Johnny Darter (<em>Etheostoma nigrum</em>) species complex, where traditional taxonomy and molecular phylogenetics indicate a history of gene flow and conflicting inferences of species diversity. Here we assemble a genomic dataset using double digest restriction site associated DNA (ddRAD) sequencing and use phylogenomic and population genetic approaches to investigate the evolutionary history of the complex of species that includes <em>E. nigrum, E. olmstedi, E. perlongum, </em>and<em> E. susanae</em>. We reveal and validate several evolutionary lineages that we delimit as species, highlighting the need for additional work to formally describe the diversity of the <em>Etheostoma nigrum </em>complex. Our analyses also identify gene flow among recently diverged lineages, including one instance involving <em>E. susanae</em>, a localized and endangered species. Phylogeographic structure within the <em>Etheostoma nigrum </em>species complex coincides with major geologic events, such as parallel divergence in river basins during Pliocene inundation of the Atlantic coastal plain and multiple northward post-glacial colonization routes tracking river basin rearrangements. Our study serves as a nuanced example of how low dispersal rates coupled with geographic isolation among disconnected river systems in eastern North America have produced one of the world's freshwater biodiversity hotspots.</p>
Tension zone trapped by exogenous cline: analysis of a narrow hybrid zone between two parapatric Oxytropis species (Fabaceae)
<p>Hybrid zones have been widely highlighted for their interest in understanding evolutionary processes. It is generally accepted that hybrid zones can be maintained in a balance between dispersal and selection. However, the selective forces can either be endogenous (i.e., genetic incompatibilities between parental taxa) or exogenous (i.e., parental taxa are adapted to different environments).</p> <p>In this study, we evaluated these alternatives and determined the maintenance of a narrow hybrid zone between parapatric distributed <em>Oxytropis diversifolia</em> and <em>O. leptophylla</em> in Nei Mongol, China. For 507 individuals sampled from two populations in the hybrid zone, 12 <em>O. diversifolia</em> populations and five <em>O. leptophylla</em> populations, we measured leaf-morphological characteristics, quantified genetic structure using 11 nuclear microsatellite loci and five chloroplast DNA intergenic regions, collected micro- and macrohabitat data, and conducted geographical cline analysis.</p> <p>We found that the two species differed in leaf morphology, and putative hybrids showed either intermediacy or a bias to <em>O. diversifolia</em>. Parental taxa formed two genetically distinct clusters, while populations in the hybrid zone consisted of both parental forms and various admixed individuals, exhibiting a bimodal pattern. The hybrid zone was coupled to ecological transitions of both microhabitat (i.e., the slope) and macroclimatic conditions. However, the genetic clines were significantly narrower than the environmental cline.</p> <p>Our results indicate that endogenous selection can be primarily responsible for maintaining the hybrid zone, while local adaptation accounts for the position of the zone. We further suggest the probable outcome of hybridization could be introgression.</p>
Data for MILP algorithm for control strategy optimisation of a hybrid solar thermal plant consisting of two different solar fields working for two processes at different temperatures, a three tanks storage and a boiler for SHIP applications
<p>This repository contains the results of simulations exposed in the article <strong>MILP algorithm for control strategy optimisation of a hybrid solar thermal plant consisting of two different solar fields working for two processes at different temperatures, a three tanks storage and a boiler for SHIP applications.</strong></p> <p>Notebooks for easy plotting of the results are contained in this repository. The README.txt contains light explainations regarding how to use those notebooks.</p> <p>This article is yet to be published at the time of writing.</p> <p> </p>
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.