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Tables of direct, indirect and networks estimates and Forests plots of pairwise comparisons for all secondary outcomes
<p>Supplementary File #12 for Cochrane review entitled: "Non-invasive respiratory support in preterm infants as primary mode: a network meta-analysis"</p>
FIG. 1 in Effects of Secondary Forest Succession on Amphibians and Reptiles: A Review and Meta-analysis
FIG. 1. Map of percent of primary forest (black) and other naturally regenerated or planted forests (white) as defined by FAO (2015) by continent.
FIG. 4 in Effects of Secondary Forest Succession on Amphibians and Reptiles: A Review and Meta-analysis
FIG. 4. Published estimates of time to recovery (years) of amphibian and reptile species richness. Arrow under Petranka et al. (1994) indicates that more than 80 years were required for species richness to recover.
FIG. 3 in Effects of Secondary Forest Succession on Amphibians and Reptiles: A Review and Meta-analysis
FIG. 3. The age distribution of forest included in 20 of the published articles included in the meta-analysis. Four studies did not provide information on secondary forest age.
FIG. 2 in Effects of Secondary Forest Succession on Amphibians and Reptiles: A Review and Meta-analysis
FIG. 2. Map of study sites included in meta-analysis by country. Black dots indicate the study locations. Points jittered in the northwestern United States to show overlapping locations.
FIGURE 7. Secondary structures for the D1–D1 in Roholtiella, gen. nov. (Nostocales, Cyanobacteria)-a tapering and branching cyanobacteria of the family Nostocaceae
FIGURE 7. Secondary structures for the D1–D1' helix in the ITS regions for Roholtiella spp. and representative outgroup taxa, Calochaete cimrmanii and Nostoc indistinguendum. Arrows and a bold font style show bases variable among species, while the circled adenine residue is an alternate base in R. edaphica CCALA 1063 and circled cytosine is an alternate base in N. indistinguendum. A–B. Equally thermodynamically stable structures in R. edaphica are shown for the following strains: CCALA 1061 for the operon with no tRNA genes; CCALA 1055-56, 1060, 1062 for the no tRNA operon as well as the operon with both tRNA genes. C–D. Differences in operons are shown for R. mojaviensis. C. Operon with no tRNA for CCALA 1051 and 1052 as well as the operon with both tRNA for CCALA 1052. D. Variation of the operon with no tRNA of CCALA 1051. E. No sequence differences existed between operons with no or with both tRNAs for R. fluviatilis (CCALA 1058), and R. bashkiriorum (CCALA 1057, 1059). F. D1–D1' helix for C. cimrmanii (strain CCALA 1012) showing the operon with no tRNA. G. D1–D1' helix for recovered operons with and without both tRNAs for N. indistinguendum (strain CM1-VF10).
FIGURE 8. Secondary structures for the BoxB and V3 in Roholtiella, gen. nov. (Nostocales, Cyanobacteria)-a tapering and branching cyanobacteria of the family Nostocaceae
FIGURE 8. Secondary structures for the BoxB and V3 helices in the ITS regions for Roholtiella spp. and representative outgroup taxa, C. cimrmanii and N. indistinguendum. Arrows and a bold font style show bases variable among species. Helices are arranged by taxon in vertical columns, with taxon label next to the V3 helix. A–F. BoxB helices from operons with both tRNA genes. A. Roholtiella edaphica strains CCALA 1055-56, CCALA 1060-61. B. Roholtiella edaphica strain CCALA 1062. C. Roholtiella mojaviensis strains CCALA 1051- 52. D. Roholtiella bashkiriorum strains CCALA 1057 and 1059. E. Roholtiella fluviatilis strain CCALA 1058. F. Nostoc indistinguendum strain CM1-VF10. G–M. BoxB helices from operons with no tRNA genes. G. Roholtiella edaphica strains CCALA 1055 and 1060. H. Roholtiella edaphica strain CCALA 1062. I. Roholtiella mojaviensis strain CCALA 1052. J. Roholtiella bashkiriorum strain CCALA 1057. K. Roholtiella fluviatilis strain CCALA 1058. L. C. cimrmanii strain CCALA 1012. M. Nostoc indistinguendum strain CM1-VF10. N–T. V3 helices. Circled residues represent alternate bases in different strains, or in the case of R. fluviatilis, between different operons in the same strain. N. The structure without the circled bases was obtained for R. edaphica strains CCALA 1060 (no and both tRNA operons) and CCALA 1056 (no tRNA operon).The alternative structure with the circled bases was obtained for strains CCALA 1061 (no tRNA operon) and CCALA 1055 (no and both tRNA operons). O. Roholtiella edaphica strain CCALA 1062. P. Roholtiella mojaviensis strains CCALA 1051-52. Q. The structure without the circled bases was obtained for R. bashkiriorum strains CCALA 1057 (both tRNA operons) and CCALA 1059 (no tRNA operon). The alternative structure with the circled bases was obtained for strain CCALA 1057 (no tRNA operon). R. The structure without the circled bases was obtained for R. fluviatilis strain CCALA 1058 for the operon with both tRNA. The alternative structure with the circled bases was obtained for the operon with no tRNA. S. C. cimrmanii strain CCALA 1012 showing the
FIGURE 5. Secondary structures for the D1–D1 in Phylogenetic position reevaluation of Kyrtuthrix and description of a new species K. huatulcensis from Mexico´s Pacific coast
FIGURE 5. Secondary structures for the D1–D1', Box-B, V2 and V3 helices in the conserved regions of the 16S–23S ITS region: A, F, K, P: Kyrtuthrix huatulcensis; B, G, L, Q: Marine Rivulariaceae I (with variability in two operons shown); C, H, M, R: Marine Rivulariaceae II; D, I, N, S: Marine Rivulariaceae III; E, J, O, T: Microchaete grisea CCAP1445.
FIGURE 5. Estimated 16S-23S ITS secondary structures D1-D1 in Revealing hidden diversity among tropical cyanobacteria the new genus Onodrimia (Synechococcales, Cyanobacteria) described using the polyphasic approach
FIGURE 5. Estimated 16S-23S ITS secondary structures D1-D1´and Box-B helices of (A, J) Onodrimia javanensis E27, E28, E30, (B, K) Leptolyngbya appalachiana GSM-SFF-MF60 (EF429286), (C, L) Phormidesmis sp. WJT36-NPBG20 (KJ939034), (D, M) Phormidesmis sp. WJT67-NPBG4A (KJ939043), (E, N) Stenomitos rutilans HA7619-LM2 (KF417430), (F, O) Neosynechococcus sphagnicola sy1 (KJ469130), (G, P) Nodosilinea nodulosa UTEX 2910 (KF307598), (H, Q) Oculatella subterranea, (I, R) Leptolyngbya boryana UTEX B 485 (EF429291).
FIGURE 7 in Odontia aculeata and O. sparsa, two new species of tomentelloid fungi (Thelephorales, Basidiomycota) from the secondary forests of northeast China
FIGURE 7. Microscopic structures of Odontia sparsa (drawn from the holotype Yuan 10780). a: A section through basidiocarp; b: A section through rhizomorph; c: Basidiospores in frontal and lateral view. Drawings by: Hai-Sheng Yuan
FIGURE 4 in Odontia aculeata and O. sparsa, two new species of tomentelloid fungi (Thelephorales, Basidiomycota) from the secondary forests of northeast China
FIGURE 4. Microscopic structures of Odontia aculeata (drawn from the holotype Yuan 10793). a: A section through basidiocarp; b: A section through rhizomorph; c: Basidiospores in frontal and lateral view. Drawings by: Hai-Sheng Yuan
FIGURE 1 in Odontia aculeata and O. sparsa, two new species of tomentelloid fungi (Thelephorales, Basidiomycota) from the secondary forests of northeast China
FIGURE 1. One of maximum parsimony tree obtained from MP analysis of the ITS gene sequences of Odontia and other genera included in the study. Numbers at branches indicate parsimony bootstrap values and Bayesian posterior probabilities values higher than 50% (BP) and 0.95 (BPP).—Indicates lack of support or support less than 50% or 0.95 for an articular clade.
FIGURE 4. Predicted secondary structure for D1–D1 in Aliterella shaanxiensis (Aliterellaceae), a new coccoid cyanobacterial species from China
FIGURE 4. Predicted secondary structure for D1–D1′ helix of 16S–23S rRNA intergenic spacer of three Aliterella strains. (a) A. antarctica CENA408T; (b) A. atlantica CENA595T; (c) A. shaanxiensis FACHB–2293.
FIGURE 5. Predicted secondary structure for Box-B in Aliterella shaanxiensis (Aliterellaceae), a new coccoid cyanobacterial species from China
FIGURE 5. Predicted secondary structure for Box-B helix of 16S–23S rRNA intergenic spacer of three Aliterella strains. (a) A. antarctica CENA408T; (b) A. atlantica CENA595T; (c) A. shaanxiensis FACHB–2293.
Elemental Contrast in Secondary Electron Energy Spectrum
<p>The following data is collected from a secondary electron energy spectrometer. These data are a part of the project which intended to investigate the secondary electron energy spectrum of metal and semiconductor materials </p>
Figure 1 in Complete mitochondrial genome of the terrestrial isopod Cubaris murina Brandt, 1833: new family gene order and novel tRNA secondary structures
Figure 1. Mitochondrial genome synteny in Cubaris murina and closely related species. A dash (-) before the gene name means that the gene is encoded on the light strand. NCR means a non-coding region that is longer than 100 bp. Cubaris murina is marked in bold black and shades of grey.
Figure 2 in Complete mitochondrial genome of the terrestrial isopod Cubaris murina Brandt, 1833: new family gene order and novel tRNA secondary structures
Figure 2. Secondary structure of each transfer RNA (tRNA) visualised in Forna (http://rna.tbi.univie.ac. at/forna).
Figure 3 in Breeding biology of mimetic species based on secondary data sources should address misidentifications: the case of the lesser kiskadee Philohydor lictor (Aves: Tyrannidae)
Figure 3. Eggs of eight kiskadee-like mimetic species from egg collections. Egg collection reference (institution acronym–catalogue number): (a) NBCN–181942; (b) NBCN–181153; (c) COMB-E165; (d) WFVZ–118541-2; (e) USNM–48256; (f) MHNG–735096; (g) NBCN–181945; (h) ZMB–SN; (i) DMNH– 10519; (j) WFVZ–184215; (k) MNHN–489-490; (l) NBCN–180866; (m) WFVZ–118522.
Figure 2 in Breeding biology of mimetic species based on secondary data sources should address misidentifications: the case of the lesser kiskadee Philohydor lictor (Aves: Tyrannidae)
Figure 2. Egg-laying records of lesser kiskadee (Philohydor lictor) based on citizen science, literature, and museum egg collections in relation to monthly total precipitation.
Figure 1 in Breeding biology of mimetic species based on secondary data sources should address misidentifications: the case of the lesser kiskadee Philohydor lictor (Aves: Tyrannidae)
Figure 1. Reproductive records (nest construction, eggs, nestlings, and fledglings) of lesser kiskadee (Philohydor lictor) from citizen science, literature, and museum egg collections. Ecoregion abbreviations: Temp = Temperate, Trop = Tropical and Subtropical. Asterisks indicate the country's centroid.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.