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2,227
datasets available to search
ShareScore release 0.9.0
Dataset results
2,227 results for “Tissue expression”
PLN tissue- and age-specific changes in gene expression during disease induction and progression in NOD mice.
GEO Series GSE15150. Mus musculus. 35 samples. Type: Expression profiling by array.
RNA expression in postnatal mouse ventricular tissue
GEO Series GSE119530. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
Gene Expression in Fixed Tissues and Outcome in Hepatocellular Carcinoma
GEO Series GSE10143. Homo sapiens. 387 samples. Type: Expression profiling by array.
Expression data from pig (Sus Scrofa) ileum tissue from animals receiving different diets at 5 days after weaning
GEO Series GSE50150. Sus scrofa. 16 samples. Type: Expression profiling by array.
mRNA expression in lung tissue
GEO Series GSE123276. Mus musculus. 34 samples. Type: Expression profiling by RT-PCR.
Effects of drought on gene expression in Maize reproductive and leaf meristem tissue revealed by RNA-seq
GEO Series GSE40070. Zea mays. 8 samples. Type: Expression profiling by high throughput sequencing.
Genome-wide analysis of gene transcription in myocardium of mice transgenically expressing human cardiolipin synthase 1 (hCLS1) in cardiac tissue
GEO Series GSE33451. Mus musculus. 8 samples. Type: Expression profiling by array.
MicroRNA expression profiles in different tissues from normolipidemic hamster and high-fat diet induced hyperlipidemic hamster (Mesocricetus auratus)
GEO Series GSE128226. Rattus norvegicus; Mesocricetus auratus; Mus musculus; Homo sapiens. 24 samples. Type: Non-coding RNA profiling by array.
mRNAs and miRNAs expression data from AOM/DSS, AOM, DSS and control mouse colon epithelial tissue at day100 when tumor formed in AOM/DSS bearing mice
GEO Series GSE44988. Mus musculus. 24 samples. Type: Non-coding RNA profiling by array; Expression profiling by array.
Gene expression profiles in ruminal tissue from cows fed high or low concentrate diets
GEO Series GSE19802. Bos taurus. 10 samples. Type: Expression profiling by array.
Gene expression profiles of irradiated lung tissue in three mouse strains
GEO Series GSE20959. Mus musculus. 108 samples. Type: Expression profiling by array.
Integrated analysis of long non-coding RNAs expression profiles in tumor and adjacent gastric tissues
GEO Series GSE95667. Homo sapiens. 8 samples. Type: Non-coding RNA profiling by array.
Gene expression profiles for Pancreatic ductal adenocarcinoma cell lines and their corresponding normal and fresh frozen tissues.
GEO Series GSE58561. Homo sapiens. 15 samples. Type: Expression profiling by array.
Exclusive expression of KANK4 promotes myofibroblast mobility in keloid tissues
GEO Series GSE245660. Homo sapiens. 5 samples. Type: Expression profiling by high throughput sequencing.
Differential gene expression analysis by assessing transcriptome-wide expression variation between tissue specimen of prostate cancer (PCa) and benign prostate hyperplasia (BPH)
GEO Series GSE134073. Homo sapiens. 64 samples. Type: Expression profiling by high throughput sequencing.
Gene expression profile at single-cell resolution of liver tissues from mice exposed to electromagnetic field (EMF) after 90 and 150 days
GEO Series GSE271028. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Whole human genome expression analysis on left ventricular free wall heart tissue samples
GEO Series GSE84796. Homo sapiens. 17 samples. Type: Expression profiling by array.
Alterations in liver and epididymal white adipose tissue (eWAT) gene expression in mice with a global ablation of the NcoRω splice isoform of the corepressor Ncor1
GEO Series GSE160121. Mus musculus. 24 samples. Type: Expression profiling by high throughput sequencing.
Conservation, acquisition, and functional impact of sex-biased gene expression in mammalian tissues
<p>Processed data and code for</p> <p>Sahin Naqvi, Alexander K. Godfrey, Jennifer F. Hughes, Mary L. Goodheart, Richard N. Mitchell, & David C. Page <br> <br> <strong>Conservation, acquisition, and functional impact of sex-biased gene expression in mammalian tissues</strong></p> <p>Expression values</p> <ul> <li>gtex.filt.salmon.tximport.unadj.tpm.txt.gz Unadjusted TPM values for filtered GTEx samples</li> <li>gtex.filt.salmon.tximport.unadj.counts.txt.gz Unadjusted counts for filtered GTEx samples</li> <li>gtex.filt.salmon.tximport.adj.counts.txt.gz PCA- and histology-adjusted counts for filtered GTEx samples</li> <li>cyno.salmon.tximport.tpm.txt.gz Cynomolgus macaque TPM values</li> <li>cyno.salmon.tximport.counts.txt.gz Cynomolgus macaque counts</li> <li>mouse.salmon.tximport.tpm.txt.gz Mouse TPM values</li> <li>mouse.salmon.tximport.counts.txt.gz<a href="http://pagelab.wi.mit.edu/page/papers/Naqvi_et_al_2019/exprvals/mouse.salmon.tximport.counts.txt.gz"> </a>Mouse counts</li> <li>rat.salmon.tximport.tpm.txt.gz Rat TPM values</li> <li>rat.salmon.tximport.counts.txt.gz Rat counts</li> <li>dog.salmon.tximport.tpm.txt.gz Dog TPM values</li> <li>dog.salmon.tximport.counts.txt.gz Dog counts</li> </ul> <p>Metadata</p> <ul> <li>human.metadata.txt Human metadata (abbreviated version of GTEx metadata)</li> <li>histeval.rds Novel histological evaluations for 6 tissues (.rds file to read into R)</li> <li>nonhuman.metadata.txt Non-human metadata</li> </ul> <p>Scripts</p> <ul> <li>filterSamples.R<a href="http://pagelab.wi.mit.edu/page/papers/Naqvi_et_al_2019/scripts/filterSamples.R"> </a>R code to filter GTEx samples based on medical history and cause of death</li> <li>cadjust_exprvals.Rmd<a href="http://pagelab.wi.mit.edu/page/papers/Naqvi_et_al_2019/scripts/pcadjust_exprvals.Rmd"> </a>R code to perform PCA and histology-based adjustment of expression values in GTEx data</li> <li>choosePCs.R<a href="http://pagelab.wi.mit.edu/page/papers/Naqvi_et_al_2019/scripts/choosePCs.R"> </a>Helper function for 'pcadjust_exprvals.Rmd'</li> <li>perform_sexdiff.Rmd R code to perform linear modeling of sex differences across 12 tissues and 5 species. Uses 'getSexBiasStats.R'</li> <li>getSexBiasStats.R<a href="http://pagelab.wi.mit.edu/page/papers/Naqvi_et_al_2019/scripts/getSexBiasStats.R"> </a>Helper function for 'perform_sexdiff.Rmd'</li> </ul> <p>Intermediate files</p> <ul> <li>one2oneorth_emblids.txt One-to-one orthologs across the 5 species</li> <li>one2oneorth_60spectis_beta.txt Gene x tissue-species matrix of estimates of sex bias (beta)</li> <li>one2oneorth_60spectis_beta_se.txt Gene x tissue-species matrix of estimates of sex bias (beta) standard error</li> <li>one2oneorth_60spectis_mashr_pm.txt Gene x tissue-species matrix of mashr posterior estimates of sex bias (posterior mean)</li> <li>one2oneorth_60spectis_mashr_lfsr.txt Gene x tissue-species matrix of mash local false sign rate</li> <li>salmon.starref.tximport.voom.spec5orth.sfa_F.out Sparse factors learned from the gene x tissue-species beta matrix, used as input to mashr</li> </ul> <p>Output files</p> <ul> <li>sexbias.conserved.matrix.txt Gene x tissue matrix of conserved sex bias. 1 indicates male bias, -1 female bias (same for other matrices in this section)</li> <li>sexbias.primategain.matrix.txt Gene x tissue matrix of sex bias gained in primates</li> <li>sexbias.primateloss.matrix.txt<a href="http://pagelab.wi.mit.edu/page/papers/Naqvi_et_al_2019/sexbias.primateloss.matrix.txt"> </a>Gene x tissue matrix of sex bias lost in primates</li> <li>sexbias.rodentgain.matrix.txt Gene x tissue matrix of sex bias gained in rodents</li> <li>sexbias.rodentloss.matrix.txt Gene x tissue matrix of sex bias lost in rodents</li> <li>sexbias.humangain.matrix.txt Gene x tissue matrix of sex bias gained in human</li> <li>sexbias.cynogain.matrix.txt Gene x tissue matrix of sex bias gained in cyno</li> <li>sexbias.mousegain.matrix.txt Gene x tissue matrix of sex bias gained in mouse</li> <li>sexbias.ratgain.matrix.txt Gene x tissue matrix of sex bias gained in rat</li> <li>sexbias.doggain.matrix.txt Gene x tissue matrix of sex bias gained in dog</li> <li>sexbias.multiplegain.matrix.txt Gene x tissue matrix of sex bias likely gained in multiple lineages</li> <li>sexbias.multipleloss.matrix.txt Gene x tissue matrix of sex bias likely lost in multiple lineages</li> <li>sexbias.complex.matrix.txt Gene x tissue matrix of sex bias with complex patterns across species that could not be categorized into gains or losses</li> </ul> <p>Data from other studies</p> <ul> <li>liang2017.human.skin.txt Limma/voom output of sex differences in human skin, from Liang et al, 2017</li> <li>lindholm2017.human.muscle.txt Limma/voom output of sex differences in human muscle, from Lindholm et al, 2017</li> <li>li2017.marin2017.mouse.heart.txt Limma/voom output of sex differences in mouse heart, combining Li et al, 2017 and Marin et al, 2017</li> <li>li2017.marin2017.mouse.liver.txt Limma/voom output of sex differences in mouse liver, combining Li et al, 2017 and Marin et al, 2017</li> <li>li2017.mouse.adrenal.txt Limma/voom output of sex differences in mouse adrenal gland, from Li et al, 2017</li> <li>li2017.mouse.brain.txt Limma/voom output of sex differences in mouse brain, from Li et al, 2017</li> <li>li2017.mouse.lung.txt Limma/voom output of sex differences in mouse lung, from Li et al, 2017</li> <li>li2017.mouse.muscle.txt Limma/voom output of sex differences in mouse muscle, from Li et al, 2017</li> <li>li2017.mouse.spleen.txt Limma/voom output of sex differences in mouse spleen, from Li et al, 2017</li> <li>yang2006.mouse.muscle.geo2r.txt GEO2R output of sex differences in mouse muscle, from Yang et al, 2006</li> <li>franco2010.mouse.lung.geo2r.txt Lim GEO2R output of sex differences in mouse lung, from Franco et al, 2010</li> </ul>
Gene Expression Profiling of Cervical Cancer Progression in Biopsies and Tissue Samples
ClinicalTrials.gov study NCT00629577. IPD Sharing: Not stated. Countries: 1. Publications: 0.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.