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2,031 results for “Transformation”
Data from: High-throughput genotyping of green algal mutants reveals random distribution of mutagenic insertion sites and endonucleolytic cleavage of transforming DNA
A high-throughput genetic screening platform in a single-celled photosynthetic eukaryote would be a transformative addition to the plant biology toolbox. Here, we present ChlaMmeSeq (Chlamydomonas MmeI-based insertion site Sequencing), a tool for simultaneous mapping of tens of thousands of mutagenic insertion sites in the eukaryotic unicellular green alga Chlamydomonas reinhardtii. We first validated ChlaMmeSeq by in-depth characterization of individual insertion sites. We then applied ChlaMmeSeq to a mutant pool and mapped 11,478 insertions, covering 39% of annotated protein coding genes. We observe that insertions are distributed in a manner largely indistinguishable from random, indicating that mutants in nearly all genes can be obtained efficiently. The data reveal that sequence-specific endonucleolytic activities cleave the transforming DNA and allow us to propose a simple model to explain the origin of the poorly understood exogenous sequences that sometimes surround insertion sites. ChlaMmeSeq is quantitatively reproducible, enabling its use for pooled enrichment screens and for the generation of indexed mutant libraries. Additionally, ChlaMmeSeq allows genotyping of hits from Chlamydomonas screens on an unprecedented scale, opening the door to comprehensive identification of genes with roles in photosynthesis, algal lipid metabolism, the algal carbon-concentrating mechanism, phototaxis, the biogenesis and function of cilia, and other processes for which C. reinhardtii is a leading model system.
Rectangles detected with the discrete Central multi-scale Radon transform
<p>A screen recording of a demonstration mobile phone application that uses the discrete Central Radon transfom to detect, in real-time, the most prominent rectangle seen by the device's camera.</p>
Training Data From : "Squishing skyrmions: symmetry guided dynamic transformation of polar topologies under compression"
<ul> <li>Zip file contains folder of training data in XSF Format </li> <li>.nn files are neural network binary parameter files</li> <li>.nn_asc files neural network parameter text files </li> </ul> <p>.nn files were generated and can be read by the AENET software (http://ann.atomistic.net/) </p> <p> </p>
Transformed Eulerian mean data from CMIP5 EC-Earth v2.3 AMIP experiment
<p>Data are derived from EC-Earth atmosphere-only experiment outputs for CMIP5 (identifier SA07), following the procedure described in a paper currently in preparation.</p> <p>Files are organized in one .tar file for each variable and temporal aggregation (monthly and daily).</p> <p>The simulation was done by the Swedish Meteorological and hydrological Institute (SMHI) on resources provided by the Swedish National Infrastructure for Computing (SNIC).</p>
Dataset for the paper "A boundary-guided transformer based method for measuring distance from rectal tumor to anal verge on magnetic resonance images"
<p>A sagittal MR rectal image dataset for the field of DTAV measurement.</p>
Intraassay experiment: Asinh transformed, rescaled CD3 exported, csv-format.
<p>See https://git.uni-regensburg.de/datasrc/cytometry/ukr/2022-10-17_Intraassay_variation. </p> <p>The pipeline has been run and the results of the following commit hash presented here: 81ae31eead30ba9904672b4057970e25d6717a54</p> <p>These files are the .csv-format files.</p> <p> </p> <p>The .zip has been created with 7zip. </p>
Artifact of paper "Transforming Test Suites Into Croissants"
<p>This is the artifact of paper "Transforming Test Suites Into Croissants".</p>
Fig. 4. Key correlations for compounds 6–14 in Microbial transformation of capsaicin by several human intestinal fungi and their inhibitory effects against lysine-specific demethylase 1
Fig. 4. Key correlations for compounds 6–14 observed in HMBC and 1H–1H COSY spectra.
Fig. 2 in Microbial transformation of capsaicin by several human intestinal fungi and their inhibitory effects against lysine-specific demethylase 1
Fig. 2. Key correlations for metabolites (1, 3–5) observed in HMBC and 1H–1H COSY spectra.
Fig. 2. Key 1H–1H in Transformation of 15-ene steviol by Aspergillus niger, Cunninghamella bainieri, and Mortierella isabellina
Fig. 2. Key 1H–1H COSY and HMBC correlations of 4, 7, 9 and 11.
Fig. 4 in Transformation of 15-ene steviol by Aspergillus niger, Cunninghamella bainieri, and Mortierella isabellina
Fig. 4. ORTEP drawing of the X-ray structure of 4•H2O, 7 and 11.
Fig. 1 in Transformation of 15-ene steviol by Aspergillus niger, Cunninghamella bainieri, and Mortierella isabellina
Fig. 1. Structures of stevioside and compounds 1–12.
Fig. 3 in Transformation of 15-ene steviol by Aspergillus niger, Cunninghamella bainieri, and Mortierella isabellina
Fig. 3. Key NOESY correlations of 4, 7, 9 and 11.
Data for "No Train No Gain: Revisiting Efficient Training Algorithms For Transformer-based Language Models"
<p>Datasets to reproduce the experiments associated with the paper: https://doi.org/10.48550/arXiv.2307.06440</p> <p>The readme contains instructions for how to use them: https://github.com/JeanKaddour/NoTrainNoGain/blob/main/bert/README.md</p> <p>c4-subset-random.tar.bz2 is a subset of the C4 dataset (https://arxiv.org/abs/1910.10683), licensed under ODC-BY 1.0.</p>
Fig. 6 in Lichen-associated bacteria transform antibacterial usnic acid to products of lower antibiotic activity
Fig. 6. UA and the ethanolamine H derivative obtained after biotransformation.
Fig. 9 in Lichen-associated bacteria transform antibacterial usnic acid to products of lower antibiotic activity
Fig. 9. Fragmentation pattern proposed for one possible isomer of the methylated usnic acid K.
On the effects of transformation strain induced by hydride precipitation
<p>Electron backscatter diffraction data for zirconium hydrides. More information can be found in the paper:</p> <p>Masoud Taherijam, Saiedeh Marashi, Alireza Tondro, Hamidreza Abdolvand, "On the effects of transformation strain induced by hydride precipitation", Acta Materialia, 119356, DOI: https://doi.org/10.1016/j.actamat.2023.119356</p> <p> </p>
The monumental landscape transformation of the Island of Babeldaob (Republic of Palau)
<p>Drone-recorded Film of the monumental earthworks excavated and researched at the island of Babeldaob (Republic of Palau).</p> <p>https://publications.dainst.org/journals/joga/article/view/3849</p>
Transforming Adolescent Mental Health Through Accessible, Scalable, Technology-supported Small-group Instruction
ClinicalTrials.gov study NCT05860257. IPD Sharing: YES. Countries: 1. Publications: 0.
Transform Randomised Control Trial in Uganda
ClinicalTrials.gov study NCT05882097. IPD Sharing: NO. Countries: 1. Publications: 0.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.