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915
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ShareScore release 0.7.1
Dataset results
915 results for “metagenomics”
Supplementary material 1 from: Okanishi M, Kohtsuka H, Wu Q, Shinji J, Shibata N, Tamada T, Nakano T, Minamoto T (2023) Development of two new sets of PCR primers for eDNA metabarcoding of brittle stars (Echinodermata, Ophiuroidea). Metabarcoding and Metagenomics 7: e94298. https://doi.org/10.3897/mbmg.7.94298
A fasta file of 1,340 mitochondrial 16S rRNA gene sequences
Supplementary material 5 from: Okanishi M, Kohtsuka H, Wu Q, Shinji J, Shibata N, Tamada T, Nakano T, Minamoto T (2023) Development of two new sets of PCR primers for eDNA metabarcoding of brittle stars (Echinodermata, Ophiuroidea). Metabarcoding and Metagenomics 7: e94298. https://doi.org/10.3897/mbmg.7.94298
Additional data
Metagenomics example reads
<p>Example metagenomics, paired-end, Illumina reads</p>
Supplementary material 1 from: Liu M, Burridge CP, Clarke LJ, Baker SC, Jordan GJ (2023) Does phylogeny explain bias in quantitative DNA metabarcoding? Metabarcoding and Metagenomics 7: e101266. https://doi.org/10.3897/mbmg.7.101266
The bioinformatic pipeline of processing metabarcoding data
Supplementary material 3 from: Liu M, Burridge CP, Clarke LJ, Baker SC, Jordan GJ (2023) Does phylogeny explain bias in quantitative DNA metabarcoding? Metabarcoding and Metagenomics 7: e101266. https://doi.org/10.3897/mbmg.7.101266
Scoring scheme for mismatch between DNA template and primers
Supplementary material 2 from: Liu M, Burridge CP, Clarke LJ, Baker SC, Jordan GJ (2023) Does phylogeny explain bias in quantitative DNA metabarcoding? Metabarcoding and Metagenomics 7: e101266. https://doi.org/10.3897/mbmg.7.101266
Composition and biomass of 24 studied samples, and HTS read abundance of studied species
Supplementary material 7 from: Kolter A, Husemann M, Podsiadlowski L, Gemeinholzer B (2023) Pollen metabarcoding of museum specimens and recently collected bumblebees (Bombus) indicates foraging shifts. Metabarcoding and Metagenomics 7: e86883. https://doi.org/10.3897/mbmg.7.86883
Raw ASV data
Supplementary material 1 from: Kolter A, Husemann M, Podsiadlowski L, Gemeinholzer B (2023) Pollen metabarcoding of museum specimens and recently collected bumblebees (Bombus) indicates foraging shifts. Metabarcoding and Metagenomics 7: e86883. https://doi.org/10.3897/mbmg.7.86883
Optimizations
Supplementary material 6 from: Kolter A, Husemann M, Podsiadlowski L, Gemeinholzer B (2023) Pollen metabarcoding of museum specimens and recently collected bumblebees (Bombus) indicates foraging shifts. Metabarcoding and Metagenomics 7: e86883. https://doi.org/10.3897/mbmg.7.86883
R pipeline and reference database
Supplementary material 3 from: Kolter A, Husemann M, Podsiadlowski L, Gemeinholzer B (2023) Pollen metabarcoding of museum specimens and recently collected bumblebees (Bombus) indicates foraging shifts. Metabarcoding and Metagenomics 7: e86883. https://doi.org/10.3897/mbmg.7.86883
trnL-P6 protocol - primer sequences
Supplementary material 4 from: Kolter A, Husemann M, Podsiadlowski L, Gemeinholzer B (2023) Pollen metabarcoding of museum specimens and recently collected bumblebees (Bombus) indicates foraging shifts. Metabarcoding and Metagenomics 7: e86883. https://doi.org/10.3897/mbmg.7.86883
Reference database protocol
Supplementary material 2 from: Kolter A, Husemann M, Podsiadlowski L, Gemeinholzer B (2023) Pollen metabarcoding of museum specimens and recently collected bumblebees (Bombus) indicates foraging shifts. Metabarcoding and Metagenomics 7: e86883. https://doi.org/10.3897/mbmg.7.86883
DNA extraction protocol
Supplementary material 5 from: Kolter A, Husemann M, Podsiadlowski L, Gemeinholzer B (2023) Pollen metabarcoding of museum specimens and recently collected bumblebees (Bombus) indicates foraging shifts. Metabarcoding and Metagenomics 7: e86883. https://doi.org/10.3897/mbmg.7.86883
Sequence processing workflow
Supplementary material 1 from: Röder N, Schwenk K (2023) Direct PCR meets high-throughput sequencing – metabarcoding of chironomid communities without DNA extraction. Metabarcoding and Metagenomics 7: e102455. https://doi.org/10.3897/mbmg.7.102455
Overview of chironomid size classes
Supplementary material 2 from: Röder N, Schwenk K (2023) Direct PCR meets high-throughput sequencing – metabarcoding of chironomid communities without DNA extraction. Metabarcoding and Metagenomics 7: e102455. https://doi.org/10.3897/mbmg.7.102455
Composition of the two artificial chironomid communities
Supplementary material 1 from: Hubancheva A, Bozicevic V, Morinière J, Goerlitz HR (2023) DNA metabarcoding data from faecal samples of the lesser (Myotis blythii) and the greater (Myotis myotis) mouse-eared bats from Bulgaria. Metabarcoding and Metagenomics 7: e106844. https://doi.org/10.3897/mbmg.7.106844
Metabarcoding data from M. myotis and M. blythii from Bulgaria
Supplementary material 2 from: Parisy B, Schmidt NM, Wirta H, Stewart L, Pellissier L, Holben WE, Pannoni S, Somervuo P, Jones MM, Siren J, Vesterinen E, Ovaskainen O, Roslin T (2023) Ecological signals of arctic plant-microbe associations are consistent across eDNA and vegetation surveys. Metabarcoding and Metagenomics 7: e99979. https://doi.org/10.3897/mbmg.7.99979
Key to taxa for Figure 5, figures S11A and S11B
Supplementary material 1 from: Parisy B, Schmidt NM, Wirta H, Stewart L, Pellissier L, Holben WE, Pannoni S, Somervuo P, Jones MM, Siren J, Vesterinen E, Ovaskainen O, Roslin T (2023) Ecological signals of arctic plant-microbe associations are consistent across eDNA and vegetation surveys. Metabarcoding and Metagenomics 7: e99979. https://doi.org/10.3897/mbmg.7.99979
Complementary figures and details about the article
Data tomato metagenomics
<p>Data tomato mas datos</p>
Supplementary material 8 from: Macher T-H, Schütz R, Yildiz A, Beermann AJ, Leese F (2023) Evaluating five primer pairs for environmental DNA metabarcoding of Central European fish species based on mock communities. Metabarcoding and Metagenomics 7: e103856. https://doi.org/10.3897/mbmg.7.103856
Unmodified TaXon tables of each primer pair
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.