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78 results for “3D Model Data”
Data for Figures in "Dynamics of K$_2$Ni$_2$(SO$_4$)$_3$ governed by proximity to a 3D spin liquid model"
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The Magnetotelluric data, 3D resistivity model, and the reprocessed Seismic data for Timmins, Canada
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3D Vs model and phase velocity dispersion data of the Pearl River Delta onshore-offshore area
<p>3D Vs model and phase velocity dispersion data for PRD.</p>
Data from: Ellipsoid segmentation model for analyzing light-attenuated 3D confocal image stacks of fluorescent multi-cellular spheroids
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Functional and ecomorphological evolution of orbit shape in Mesozoic archosaurs is driven by body size and diet: Geometric morphometric data, 3D models (stl files), FEA models (Hypermesh, Abaqus files)
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CT data and 3D models of phocoenid periotic and bony labyrinth (CCNHM 1913)
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GEOS-5 FP-IT 3D Time-Averaged Model-Layer Assimilated Data Geo-Colocated to OMI/Aura UV2 1-Orbit L2 Swath 13x24km V4 (OMUFPMET) at GES DISC
The GEOS-5 FP-IT 3D Time-Averaged Model-Layer Assimilated Data Geo-Colocated to OMI/Aura UV2 1-Orbit L2 Swath 13x24km (OMUFPMET) product provides selected meteorlogical fields from the GEOS-5 Forward Processing for Instrument Teams (FP-IT) assimilated product produced by the Global Modeling and Assimilation Office (GMAO) co-located in space and time with the OMI UV-2 swath.The fields in this product include layer pressure thickness, surface pressure, vertical temperature profiles, surface potential, and mid-layer pressure along with geolocation info. The OMI team also provides a corresponding product for the OMI VIS swath, OMVFPMET. The OMI ancillary products were developed to provide supplementary information for use with the OMI collection 4 L1B data sets. The original GEOS-5 FP-IT data are reported on a 0.625 deg longitude by 0.5 deg latitude grid, whereas the OMI UV-2 spatial resolution is 13km x 24km at nadir.The OMUFPMET files are in netCDF4 format which is compatible with most netCDF and HDF5 readers and tools. Each file is approximately 45mb in size. The lead for this product is Zachary Fasnacht of SSAI. Joanna Joiner is the responsible NASA official.
GEOS-5 FP-IT 3D Time-Averaged Model-Layer Assimilated Data Geo-Colocated to OMI/Aura VIS 1-Orbit L2 Swath 13x24km V4 (OMVFPMET) at GES DISC
The GEOS-5 FP-IT 3D Time-Averaged Model-Layer Assimilated Data Geo-Colocated to OMI/Aura VIS 1-Orbit L2 Swath 13x24km (OMVFPMET) product provides selected meteorlogical fields from the GEOS-5 Forward Processing for Instrument Teams (FP-IT) assimilated product produced by the Global Modeling and Assimilation Office (GMAO) co-located in space and time with the OMI UV-2 swath.The fields in this product include layer pressure thickness, surface pressure, vertical temperature profiles, surface potential, and mid-layer pressure along with geolocation info. The OMI team also provides a corresponding product for the OMI UV2 swath, OMUFPMET. The OMI ancillary products were developed to provide supplementary information for use with the OMI collection 4 L1B data sets. The original GEOS-5 FP-IT data are reported on a 0.625 deg longitude by 0.5 deg latitude grid, whereas the OMI UV-2 spatial resolution is 13km x 24km at nadir.The OMVFPMET files are in netCDF4 format which is compatible with most netCDF and HDF5 readers and tools. Each file is approximately 45mb in size. The lead for this product is Zachary Fasnacht of SSAI. Joanna Joiner is the responsible NASA official.
Expression data from human 3D skin models treated with synthetic pseudo-ceramide for medical containing steroid cream
GEO Series GSE253780. Homo sapiens. 9 samples. Type: Expression profiling by high throughput sequencing.
The Resilience of Habitable Climates Around Circumbinary Stars: 3D climate model data Part 1
<p>Climate modeling outputs used in the paper, "The Resilience of Habitable Climates Around Circumbinary Stars", to be published JGR-Planets Special Edition on Exoplanets. Files contain 4 Earth years of hourly time cadence outputs of basic climate fields. Hourly time-cadence is needed in order to grasp the temporal variations of circumbinaries. </p> <p> </p> <p> </p>
Cross-correlation functions, dispersion data, and 3D velocity models of the Chao lake
<p>We obtained a 3-D isotropic and azimuthal anisotropic model beneath the Chao Lake. These datasets contain the cross-correlation functions, dispersion data we picked, and the models we obtained.</p>
Data from: From the cover: three-dimensional (3d) heparg spheroid model with physiologically relevant xenobiotic metabolism competence and hepatocyte functionality for liver toxicity screening.
Effective prediction of human responses to chemical and drug exposure is of critical importance in environmental toxicology research and drug development. While significant progress has been made to address this challenge using invitro liver models, these approaches often fail due to inadequate tissue model functionality. Herein, we describe the development, optimization, and characterization of a novel three-dimensional (3D) spheroid model using differentiated HepaRG cells that achieve and maintain physiologically relevant levels of xenobiotic metabolism (CYP1A2, CYP2B6, and CYP3A4/5). This invitro model maintains a stable phenotype over multiple weeks in both 96- and 384-well formats, supports highly reproducible tissue-like architectures and models pharmacologically- and environmentally important hepatic receptor pathways (ie AhR, CAR, and PXR) analogous to primary human hepatocyte cultures. HepaRG spheroid cultures use 50–100× fewer cells than conventional two dimensional cultures, and enable the identification of metabolically activated toxicants. Spheroid size, time in culture and culture media composition were important factors affecting basal levels of xenobiotic metabolism and liver enzyme inducibility with activators of hepatic receptors AhR, CAR and PXR. Repeated exposure studies showed higher sensitivity than traditional 2D cultures in identifying compounds that cause liver injury and metabolism-dependent toxicity. This platform combines the well-documented impact of 3D culture configuration for improved tissue functionality and longevity with the requisite throughput and repeatability needed for year-over-year toxicology screening.
Models and data in support of "EMFEM: a parallel 3D modeling code for frequency-domain electromagnetic method using goal-oriented adaptive finite element method"
<p>These directories contain the model and data files for "EMFEM: a parallel 3D modeling code for frequency-domain electromagnetic method using goal-oriented adaptive finite element method".<br> </p>
Data Visualization of Kidney and Prostate Tumors Using Routine Pre-Operative Imaging, 3D Printed, and 3D Virtual Reality Models
ClinicalTrials.gov study NCT03656822. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Data from: From the cover: three-dimensional (3d) heparg spheroid model with physiologically relevant xenobiotic metabolism competence and hepatocyte functionality for liver toxicity screening.
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Expression data from human 3D skin models in response to IL-31 treatment
GEO Series GSE76880. Homo sapiens. 8 samples. Type: Expression profiling by array.
Data set and 3d model from Emendi M, Sturla F, Ghosh RP, Bianchi M, Piatti F, Pluchinotta FR, Giese D, Lombardi M, Redaelli A, Bluestein D. Patient-Specific Bicuspid Aortic Valve Biomechanics: A Magnetic Resonance Imaging Integrated Fluid-Structure Interaction Approach. Ann Biomed Eng. 2020 Aug 17. doi: 10.1007/s10439-020-02571-4. Epub ahead of print. PMID: 32804291.
<p>Data set and 3d model from Emendi M, Sturla F, Ghosh RP, Bianchi M, Piatti F, Pluchinotta FR, Giese D, Lombardi M, Redaelli A, Bluestein D. Patient-Specific Bicuspid Aortic Valve Biomechanics: A Magnetic Resonance Imaging Integrated Fluid-Structure Interaction Approach. Ann Biomed Eng. 2020 Aug 17. doi: 10.1007/s10439-020-02571-4. Epub ahead of print. PMID: 32804291.</p> <p> </p> <p>This is the abstract:</p> <p>Congenital bicuspid aortic valve (BAV) consists of two fused cusps and represents a major risk factor for calcific valvular stenosis. Herein, a fully coupled fluid-structure interaction (FSI) BAV model was developed from patient-specific magnetic resonance imaging (MRI) and compared against in vivo 4-dimensional flow MRI (4D Flow). FSI simulation compared well with 4D Flow, confirming direction and magnitude of the flow jet impinging onto the aortic wall as well as location and extension of secondary flows and vortices developing at systole: the systolic flow jet originating from an elliptical 1.6 cm<sup>2</sup> orifice reached a peak velocity of 252.2 cm/s, 0.6% lower than 4D Flow, progressively impinging on the ascending aorta convexity. The FSI model predicted a peak flow rate of 22.4 L/min, 6.7% higher than 4D Flow, and provided BAV leaflets mechanical and flow-induced shear stresses, not directly attainable from MRI. At systole, the ventricular side of the non-fused leaflet revealed the highest wall shear stress (WSS) average magnitude, up to 14.6 Pa along the free margin, with WSS progressively decreasing towards the belly. During diastole, the aortic side of the fused leaflet exhibited the highest diastolic maximum principal stress, up to 322 kPa within the attachment region. Systematic comparison with ground-truth non-invasive MRI can improve the computational model ability to reproduce native BAV hemodynamics and biomechanical response more realistically, and shed light on their role in BAV patients' risk for developing complications; this approach may further contribute to the validation of advanced FSI simulations designed to assess BAV biomechanics.</p> <p> </p>
Data set from Spinelli D, Marconi S, Caruso R, Conti M, Benedetto F, De Beaufort HW, Auricchio F, Trimarchi S. 3D printing of aortic models as a teaching tool for improving understanding of aortic disease. J Cardiovasc Surg (Torino). 2019 Oct;60(5):582-588. doi: 10.23736/S0021-9509.19.10841-5. Epub 2019 Jun 26. PMID: 31256581.
<p>Data set from Spinelli D, Marconi S, Caruso R, Conti M, Benedetto F, De Beaufort HW, Auricchio F, Trimarchi S. 3D printing of aortic models as a teaching tool for improving understanding of aortic disease. J Cardiovasc Surg (Torino). 2019 Oct;60(5):582-588. doi: 10.23736/S0021-9509.19.10841-5. Epub 2019 Jun 26. PMID: 31256581.</p> <p> </p> <p>This is the abstract:</p> <p><strong>Background: </strong>A geometrical understanding of the individual patient's disease morphology is crucial in aortic surgery. The aim of our study was to validate a questionnaire addressing understanding of aortic disease and use this questionnaire to investigate the value of 3D printing as a teaching tool for surgical trainees.</p> <p><strong>Methods: </strong>Anonymized CT-angiography images of six different patients were selected as didactic cases of aortic disease and made into 3D models of transparent rigid resin with the Vat-photopolymerization technique. The 3D aortic models, which could be disassembled and reassembled, were displayed to 37 surgical trainees, immediately after a seminar on aortic disease. A questionnaire was developed to compare the trainees' understanding before (T0) and after (T1) demonstration of the 3D printed models.</p> <p><strong>Results: </strong>A panel of 15 experts participated in evaluating face and content validity of the questionnaire. The questionnaire validity was established and therefore the information investigated by the questionnaire could be synthetized using the mean of the items to indicate the understanding. The participants (mean age 28 years, range 26-34, male 59%) showed a significant improvement in understanding from T0 (median=7.25; IQR=1.50) to T1 (median=8.00; IQR=1.50; P=0.002).</p> <p><strong>Conclusions: </strong>Preliminary data suggest that the use of 3D-printed aortic models as a teaching tool was feasible and improved the understanding of aortic disease among surgical trainees.</p>
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.