Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
85
datasets available to search
ShareScore release 0.9.0
Dataset results
85 results for “Apodemus”
Figure 2 in Occlusal surface variations in genetically-identified specimens of the genus Apodemus (Mammalia: Rodentia) distributed in the Northern Anatolia region and three Turkish islands: Gökçeada, Marmara Island, and Bozcaada
Figure 2. Nomenclature of upper (a) and lower (b) teeth (Zykov and Izvarin 2020).
Data from: Estimating the molecular evolutionary rates of mitochondrial genes referring to Quaternary Ice Age events with inferred population expansions and dispersals in Japanese Apodemus
Background: Determining reliable evolutionary rates of molecular markers is essential in illustrating historical episodes with phylogenetic inferences. Although emerging evidence has suggested a high evolutionary rate for intraspecific genetic variation, it is unclear how long such high evolutionary rates persist because a recent calibration point is rarely available. Other than using fossil evidence, it is possible to estimate evolutionary rates by relying on the well-established temporal framework of the Quaternary glacial cycles that would likely have promoted both rapid expansion events and interisland dispersal events. Results: We examined mitochondrial cytochrome b (Cytb) and control region (CR) gene sequences in two Japanese wood mouse species, Apodemus argenteus and A. speciosus, of temperate origin and found signs of rapid expansion in the population from Hokkaido, the northern island of Japan. Assuming that global warming after the last glacial period 7–10 thousand years before present (kyr BP) was associated with the expansion, the evolutionary rates (sites per million years, myr) of Cytb and CR were estimated as 11–16% and 22–32%, respectively, for A. argenteus, and 12–17% and 17–24%, respectively, for A. speciosus. Additionally, the significant signature of rapid expansion detected in the mtDNA sequences of A. speciosus from the remaining southern main islands, Honshu, Shikoku, and Kyushu, provided an estimated Cytb evolutionary rate of 3.1%/site/myr under the assumption of a postglacial population expansion event long ago, most probably at 130 kyr BP. Bayesian analyses using the higher evolutionary rate of 11–17%/site/myr for Cytb supported the recent demographic or divergence events associated with the Last Glacial Maximum. However, the slower evolutionary rate of 3.1%/site/myr would be reasonable for several divergence events that were associated with glacial periods older than 130 kyr BP. Conclusions: The faster and slower evolutionary rates of Cytb can account for divergences associated with the last and earlier glacial maxima, respectively, in the phylogenetic inference of murine rodents. The elevated evolutionary rate seemed to decline within 100,000 years.
On following pages: 507. Cansdale's Swamp Rat (Malacomys cansdalel); 508. Edwards's Swamp Rat (Malacomys edwards); 509. Alpine Field Mouse (Apodemus alpicola), 510. Long-tailed Field Mouse (Apodemus sylvaticus); 511. Striped Field Mouse (Apodemus agrarius); 512. Western Broad-toothed Field Mouse (Apodemus epimelas); 513. Hyrcanian Field Mouse (Apodemus hyrcanicus); 514. Caucasus Field Mouse (Apodemus ponticus); 515. Herb Field Mouse (Apodemus uralensis); 516. Yellow-necked Field Mouse (Apodemus flavicollis); 517. Eastern Broad-toothed Field Mouse (Apodemus mystacinus), 518. Steppe Field Mouse (Apodemus witherbyi); 519. Nepalese Field Mouse (Apodemus gurkha); 520. Himalayan Field Mouse (Apodemus pallipes); 521. Kashmir Field Mouse (Apodemus rusiges); 522. Chevrier's Field Mouse (Apodemus chevrieri); 523. South China Field Mouse (Apodemus draco); 524. Large-eared Field Mouse (Apodemus latronum); 525. Taiwan Field Mouse (Apodemus semotus); 526. Korean Field Mouse (Apodemus peninsulae); 527. Small Japanese Field Mouse (Apodemus argenteus); 528. Large Japanese Field Mouse (Apodemus speciosus); 529. Okinawa Island Spiny Rat (Tokudaia muenninki); 530. Amami Spiny Rat (Tokudaiaosimensis); 531. Tokunoshima Spiny Rat (Tokudaia tokunoshimensis). in Muridae
On following pages: 507. Cansdale's Swamp Rat (Malacomys cansdalel); 508. Edwards's Swamp Rat (Malacomys edwards); 509. Alpine Field Mouse (Apodemus alpicola), 510. Long-tailed Field Mouse (Apodemus sylvaticus); 511. Striped Field Mouse (Apodemus agrarius); 512. Western Broad-toothed Field Mouse (Apodemus epimelas); 513. Hyrcanian Field Mouse (Apodemus hyrcanicus); 514. Caucasus Field Mouse (Apodemus ponticus); 515. Herb Field Mouse (Apodemus uralensis); 516. Yellow-necked Field Mouse (Apodemus flavicollis); 517. Eastern Broad-toothed Field Mouse (Apodemus mystacinus), 518. Steppe Field Mouse (Apodemus witherbyi); 519. Nepalese Field Mouse (Apodemus gurkha); 520. Himalayan Field Mouse (Apodemus pallipes); 521. Kashmir Field Mouse (Apodemus rusiges); 522. Chevrier's Field Mouse (Apodemus chevrieri); 523. South China Field Mouse (Apodemus draco); 524. Large-eared Field Mouse (Apodemus latronum); 525. Taiwan Field Mouse (Apodemus semotus); 526. Korean Field Mouse (Apodemus peninsulae); 527. Small Japanese Field Mouse (Apodemus argenteus); 528. Large Japanese Field Mouse (Apodemus speciosus); 529. Okinawa Island Spiny Rat (Tokudaia muenninki); 530. Amami Spiny Rat (Tokudaiaosimensis); 531. Tokunoshima Spiny Rat (Tokudaia tokunoshimensis).
Figure 3 in Vocal communication in the striped field mouse, Apodemus agrarius, in dyadic encounters and intraspecific cage groups
Figure 3. Examples of the calls resembling clucks: (A) shorter and more rapidly modulated and (B) longer and slightly modulated.
Figure 5 in Comparative analysis of the karyotype sensitivities of Apodemus flavicollis and laboratory mice to DNA-damaging agents
Figure 5. Polyploid metaphase in bone marrow cell of A. flavicollis after Mitomycin C treatment. Some of the chromosomes are also damaged. Pericentric inversions and fragments are observed.
Figure 2 in Vocal communication in the striped field mouse, Apodemus agrarius, in dyadic encounters and intraspecific cage groups
Figure 2. Harsh calls produced by Apodemus agrarius at (A) threatening postures and (B) harsh calls (the second, third and fifth signals) alternated by calls, resembling clucks (the first and fourth signals).
Figure 1 in Vocal communication in the striped field mouse, Apodemus agrarius, in dyadic encounters and intraspecific cage groups
Figure 1. Examples of the vocal sounds produced by Apodemus agrarius in response to (A) opponent approach and (B) during attacks and fights.
Data from: Estimating the molecular evolutionary rates of mitochondrial genes referring to Quaternary Ice Age events with inferred population expansions and dispersals in Japanese Apodemus
Open the record for dataset details and reuse information.
Data from: Possible influence of B chromosomes on genes included in immune response and parasite burden in Apodemus flavicollis
Open the record for dataset details and reuse information.
Figure 5 in Occlusal surface variations in genetically-identified specimens of the genus Apodemus (Mammalia: Rodentia) distributed in the Northern Anatolia region and three Turkish islands: Gökçeada, Marmara Island, and Bozcaada
Figure 5. The UPGMA dendrograms based on nonmetric characters. A: Interspesific data, B: A. flavicollis, C: A. mystacinus.
Figure 4 in Comparative analysis of the karyotype sensitivities of Apodemus flavicollis and laboratory mice to DNA-damaging agents
Figure 4. Pericentric inversions in bone marrow cell of A. flavicollis after Mitomycin C treatment.
Figure 2 in Comparative analysis of the karyotype sensitivities of Apodemus flavicollis and laboratory mice to DNA-damaging agents
Figure 2. Breaks and fragments in bone marrow cell of A. flavicollis after Mitomycin C treatment.
Figure 7 from: Li D, Hao J, Yao X, Liu Y, Peng T, Jin Z, Meng F (2020) Observations of the foraging behavior and activity patterns of the Korean wood mouse, Apodemus peninsulae, in China, using infra-red cameras. ZooKeys 992: 139-155. https://doi.org/10.3897/zookeys.992.57028
Figure 7 The activity rhythm of A. peninsulae during the study.
Figure 4 from: Li D, Hao J, Yao X, Liu Y, Peng T, Jin Z, Meng F (2020) Observations of the foraging behavior and activity patterns of the Korean wood mouse, Apodemus peninsulae, in China, using infra-red cameras. ZooKeys 992: 139-155. https://doi.org/10.3897/zookeys.992.57028
Figure 4 Proportion of feeding behaviors of A. peninsulae.
Figure 1 from: Li D, Hao J, Yao X, Liu Y, Peng T, Jin Z, Meng F (2020) Observations of the foraging behavior and activity patterns of the Korean wood mouse, Apodemus peninsulae, in China, using infra-red cameras. ZooKeys 992: 139-155. https://doi.org/10.3897/zookeys.992.57028
Figure 1 Some behaviors of A. peninsulae.a forage b feeding c alert d coexistence.
Figure 9 from: Li D, Hao J, Yao X, Liu Y, Peng T, Jin Z, Meng F (2020) Observations of the foraging behavior and activity patterns of the Korean wood mouse, Apodemus peninsulae, in China, using infra-red cameras. ZooKeys 992: 139-155. https://doi.org/10.3897/zookeys.992.57028
Figure 9 Interactions between illumination and feeding behavior of A. peninsulae.
Figure 3 from: Li D, Hao J, Yao X, Liu Y, Peng T, Jin Z, Meng F (2020) Observations of the foraging behavior and activity patterns of the Korean wood mouse, Apodemus peninsulae, in China, using infra-red cameras. ZooKeys 992: 139-155. https://doi.org/10.3897/zookeys.992.57028
Figure 3 Proportion of motor behaviors of A. peninsulae.
Figure 6 from: Li D, Hao J, Yao X, Liu Y, Peng T, Jin Z, Meng F (2020) Observations of the foraging behavior and activity patterns of the Korean wood mouse, Apodemus peninsulae, in China, using infra-red cameras. ZooKeys 992: 139-155. https://doi.org/10.3897/zookeys.992.57028
Figure 6 The night activity rhythm of A. peninsulae in different months.
Figure 5 from: Li D, Hao J, Yao X, Liu Y, Peng T, Jin Z, Meng F (2020) Observations of the foraging behavior and activity patterns of the Korean wood mouse, Apodemus peninsulae, in China, using infra-red cameras. ZooKeys 992: 139-155. https://doi.org/10.3897/zookeys.992.57028
Figure 5 Proportion of sentinel behaviors of A. peninsulae.
Figure 8 from: Li D, Hao J, Yao X, Liu Y, Peng T, Jin Z, Meng F (2020) Observations of the foraging behavior and activity patterns of the Korean wood mouse, Apodemus peninsulae, in China, using infra-red cameras. ZooKeys 992: 139-155. https://doi.org/10.3897/zookeys.992.57028
Figure 8 Interactions between temperature and feeding behavior of A. peninsulae.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.