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29,145 results for “Association”
Hungarian word association network
<p>Hungarian word association network. The network was collected from the word association database ConnectYourMind, which collected associations online between 2008 and 2014, primarily in Hungarian. The network has 24580 nodes and 72709 links, where nodes represent words. A directed link from node A to B indicates, that word B was given as a response to word A in a free association task. The links are weighted according to the number of instances where the specific response was given. More details about the construction of the database can be found in English in (Kovacs et al., 2021) and exhaustively in Hungarian in (Kovacs, 2013). The network is shared in edgelist format. Each row has three values A;B;C. Each row indicates a directed link from node/word A to node/word B with a weight of C. The file uses utf encoding to represent Hungarian characters. Data available according to Creative Commons Attribution-NonCommercial 4.0 International (CC BY-NC 4.0) license</p> <p><br> Kovacs L. Fogalmi rendszerek es lexikai halozatok a mentális lexikonban. 2., atdolgozott, bovitett kiadas. (In Hungarian) Budapest: Tinta. 2013.</p> <p>Kovacs L, Bota A, Hajdu L, Kresz M. Networks in the mind - what communities reveal about the structure of the lexicon. Open Linguistics. 2021 Jan 1;7(1):181-99.</p> <p>Kovács L, Bóta A, Hajdu L, Krész M. Brands, networks, communities: How brand names are wired in the mind. PLoS ONE 2022 17(8): e0273192. https://doi.org/10.1371/journal.pone.0273192</p> <p>When using the data, please give a reference to the data itself and to at least one of above mentioned publications. </p>
Genetic association analysis of anti-VEGF treatment response in neovascular age-related macular degeneration
<p>Summary statisics of an association study of 6,908,005 genetic variants with anti-VEGF nAMD treatment response in 179 treatment-naïve nAMD probands. This dataset supplements the publication "Genetic Association Analysis of Anti-VEGF Treatment Response in Neovascular Age-Related Macular Degeneration" (DOI: 10.3390/ijms23116094). Details regarding the methods and version numbers can be found in the corresponding manuscript.</p>
Event Registry events associated to Wikidata entities
<p>This is a set of labels that associate the cluster and events ids of the Event Registry dataset with entities in the Wikidata KG. This can be used in order to analyse the event description completeness in news articles, evaluate a query based document retrieval on Event Registry, etc.</p>
Genome-wide association study suggests that variation at the RCOR1 locus is associated with tinnitus in UK Biobank
<p>The dataset contains results of a genome-wide association studies for age-related hearing impairment (ARHI)-related traits as described in the following publication:<br> Wells, H.R.R., Abidin, F.N.Z., Freidin, M.B. et al. Genome-wide association study suggests that variation at the RCOR1 locus is associated with tinnitus in UK Biobank. Sci Rep 11, 6470 (2021). https://doi.org/10.1038/s41598-021-85871-6</p>
Summary statistics accompanying the article "Genome-wide association study of the human brain functional connectome reveals strong vascular component underlying global network efficiency" in Scientific Reports (2022)
<p>Summary statistics for genome-wide association studies reported in:</p> <p>Bell, S., Tozer, D.J., & Markus H.S. (2022). Genome-wide association study of the human brain functional connectome reveals strong vascular component underlying global network efficiency. <em>Scientific Reports</em>, DOI: <a href="https://dx.doi.org/10.1038/s41598-022-19106-7">10.1038/s41598-022-19106-7</a>. </p> <p><strong>Abstract</strong></p> <p>Complex brain networks play a central role in integrating activity across the human brain, and such networks can be identified in the absence of any external stimulus. We performed 10 genome-wide association studies of resting state network measures of intrinsic brain activity in up to 36,150 participants of European ancestry in the UK Biobank. We found that the heritability of global network efficiency was largely explained by blood oxygen level-dependent (BOLD) resting state fluctuation amplitudes (RSFA), which are thought to reflect the vascular component of the BOLD signal. RSFA itself had a significant genetic component and we identified 24 genomic loci associated with RSFA, 157 genes whose predicted expression correlated with it, and 3 proteins in the dorsolateral prefrontal cortex and 4 in plasma. We observed correlations with cardiovascular traits, and single-cell RNA specificity analyses revealed enrichment of vascular related cells. Our analyses also revealed a potential role of lipid transport, store-operated calcium channel activity, and inositol 1,4,5-trisphosphate binding in resting-state BOLD fluctuations. We conclude that that the heritability of global network efficiency is largely explained by the vascular component of the BOLD response as ascertained by RSFA, which itself has a significant genetic component.</p> <p> </p> <p>Further information on the files uploaded here can be found in the README. Users interested in bulk downloading these summary statistics may find <a href="https://github.com/dvolgyes/zenodo_get">zenodo_get</a> helpful.</p>
Data and analysis for Association of meeting 24-hour movement guidelines with low back pain among adults
<p>Introduction</p> <p>This data and code forms the analytical process of a study examining associations between meeting different combinations of 24-h movement guidelines (that integrates a recommendations on physical activity, sedentary behaviour, and sleep) with prevalence, frequency and intensity of low back pain in a sample of adults aged 18 years and over. </p> <p>Notes: </p> <p>* the raw data is provided alongside this upload, but the processing is not addressed here. <br> * the authors of this document are a subset of the authors of the related paper.<br> * this document and the related data files were uploaded at the time of submission for review. An update providing the doi of the related paper will be provided when it is available.</p>
Metabomatching: Using Genetic Association to Identify Metabolites in Proton NMR Spectroscopy. CoLaus Pseudospectra.
<p>Summary statistics between urine NMR metabolome features and genotypes in the CoLaus cohort. Used as test pseudospectra for metabomatching, a method for metabolite identification using genetic spiking.</p>
Metabomatching: Using Genetic Association to Identify Metabolites in Proton NMR Spectroscopy. SHIP Pseudospectra.
<p>Summary statistics between urine NMR metabolome features and genotypes in the SHIP cohort. Used as test pseudospectra for metabomatching, a method for metabolite identification using genetic spiking.</p>
Commodity-driven deforestation, associated carbon emissions and trade 2001-2022
<p><span>This dataset contains estimates of commodity-driven deforestation and associated carbon emissions for the period 2001-2022, estimated by the Deforestation Driver and Carbon Emission (DeDuCE) model (Singh & Persson 2024), which combines remote sensing data on forest loss and land-use with agricultural statistics to identify and attribute deforestation across the world to expansion of cropland, pastures and forest plantation, and the commodities produced on this land. This also contains data on deforestation embodied in the production, exports, imports, and consumption of agricultural and forestry commodities by country, year, and commodity for the time period 2005-2022 derived using physical and monetary trade models. The data is an update of the results presented in Pendrill et al. (2022) and the differences between the two datasets are detailed in the explainer available here.</span></p>
Dataset of 'HIV infection is associated with compromised tumor microenvironment adaptive immune reactivity in Hodgkin Lymphoma'
<p><span><span>§<span> </span></span></span><strong><span>:</span></strong><span>The data were generated using the i) GeoMx Digital Spatial Profiler (DSP) platform developed by Nanostring Technologies. GeoMx analysis utilizes <em>in situ </em>RNA hybridization with Whole Atlas Transcriptome probe (Nanostring) and ii) HTG platform (Immune Response kit) Our dataset comprises samples from donors categorized as HLposHIVnegEBVneg, HLposHIVposEBVpos, or HLposHIVnegEBVpos (HL: Hodgkin Lymphoma). Regions of interest (ROI) were spatially profiled to capture distinct molecular signatures associated with these donor categories.</span></p>
Moderate associations between the use of levonorgestrel-releasing intrauterine device and metabolomics profile; Supplementary Figures
<p>Supplementary Material for the article "Moderate associations between the use of levonorgestrel-releasing intrauterine device and metabolomics profile", in the Journal of Clinical Endocrinology and Metabolism</p>
Datasets: Natural killer cells associate with malignant epithelial cells in the pancreatic ductal adenocarcinoma tumor microenvironment
<p>The following are necessary data files for the manuscript "Natural killer cells associate with malignant epithelial cells in the pancreatic ductal adenocarcinoma tumor microenvironment":</p> <ul> <li>.zip files for TMA_1, TMA_2, TMA_3, and TMA_4 are .mcd files acquired from imaging mass cytometry (IMC) for each slide of the pancreas TMA slide series</li> <li>pancreas_TMA_sample_info.xlxs includes info on all samples of the TMA slide series that were imaged by IMC</li> <li>custom_gates_0.zip includes histoCAT-derived single cell data files from all IMC samples in the pancreas TMA to be used for single cell analyses in R</li> <li>PDAC_IMC.RDS is a Seurat object of the IMC-derived PDAC single cell data to use for single cell and spatial analyses</li> <li>PDAC_sce is a SingleCellExperiment object of IMC-derived PDAC single cell data to use for spatial analyses</li> <li>mat.RDS is a distance matrix of PDAC cell types to use in R to generate network graph (Figure 2)</li> </ul> <p> </p> <p> </p>
Genotyping-by-sequencing (GBS) dataset for genome wide associations of growth, phenology and plasticity traits in willow (Salix viminalis (L.))
<p>These vcf-files constitute underlying raw data material for the manuscript "Genome wide associations of growth, phenology and plasticity traits in willow (Salix viminalis (L.))". For more detailed information please consult the README file in the repository.</p>
S48 | CPPDBLISTA | Database of Chemicals likely (List A) associated with Plastic Packaging (CPPdb)
<p>This is the collection associated with list S48 CPPDBLISTA on the NORMAN Suspect List Exchange.</p> <p><a href="https://www.norman-network.com/nds/SLE/">https://www.norman-network.com/nds/SLE/</a></p> <p>S48 | CPPDBLISTA | <strong>Database of Chemicals associated with Plastic Packaging (CPPdb)</strong></p> <p>CPPdb Original File (List A and B) <a href="https://www.norman-network.com/sites/default/files/files/suspectListExchange/220319Update/CPPdb_ListA_ListB_181009_ZenodoV1.xlsx">XLSX</a> (06/03/2019)<br> Mapped Files (06/03/2019):<br> Table 2 from Groh et al as <a href="https://www.norman-network.com/sites/default/files/files/suspectListExchange/220319Update/Table2_Groh_etal_stoten_mapped.xlsx">XLSX</a>, <a href="https://www.norman-network.com/sites/default/files/files/suspectListExchange/220319Update/Table2_Groh_etal_stoten_mapped.csv">CSV</a> <br> CPPdb List A <a href="https://www.norman-network.com/sites/default/files/files/suspectListExchange/220319Update/CPPdb_ListA_Mapped_06032019.xlsx">XLSX</a>, <a href="https://www.norman-network.com/sites/default/files/files/suspectListExchange/220319Update/CPPdb_ListA_Mapped_06032019.csv">CSV</a> <br> CPPdb List B <a href="https://www.norman-network.com/sites/default/files/files/suspectListExchange/220319Update/CPPdb_ListB_Mapped_06032019.xlsx">XLSX</a>, <a href="https://www.norman-network.com/sites/default/files/files/suspectListExchange/220319Update/CPPdb_ListB_Mapped_06032019.csv">CSV</a></p> <p>Table 2 Groh et al. <a href="https://www.norman-network.com/sites/default/files/files/suspectListExchange/220319Update/Table2_Groh_etal_InChIKeys.txt">InChIKeys</a><br> CPPdb List A <a href="https://www.norman-network.com/sites/default/files/files/suspectListExchange/220319Update/CPPdb_ListA_InChIKeys.txt">InChIKeys</a><br> CPPdb List B <a href="https://www.norman-network.com/sites/default/files/files/suspectListExchange/220319Update/CPPdb_ListB_InChIKeys.txt">InChIKeys</a><br> (all 06/03/2019)</p> <p>A database of chemicals likely (List A, 903) and possibly (List B, 3353 - in another upload) associated with plastic packaging, with hazard data, from Groh et al 2019 DOI: <a href="https://doi.org/10.1016/j.scitotenv.2018.10.015">10.1016/j.scitotenv.2018.10.015</a>. Mapped to structures by CAS/Name by K. Groh & E. Schymanski.</p> <p>Latest version of original data (last update Oct 2018): DOI: <a href="http://doi.org/10.5281/zenodo.1287773">10.5281/zenodo.1287773</a></p> <p> </p>
Metabarcoding reveals a high diversity of woody host-associated Phytophthora spp. in soils at public gardens and amenity woodlands in Britain
<p>This is the demultiplexed Illumina MiSeq raw sequencing data from two 96-well plates from the following recent publication, shared with permission of the corresponding author, Sarah Green:</p> <p>Riddell <em>et al.</em> (2019). Metabarcoding reveals a high diversity of woody host-associated <em>Phytophthora</em> spp. in soils at public gardens and amenity woodlands in Britain. https://doi.org/10.7717/peerj.6931<br> <br> It consists of 244 gzipped compressed plain text FASTQ format sequence files, grouped into 122 pairs by the widely used R1 and R2 suffix. The files have been renamed to use the anonymised site numbers (1 to 14) as in the paper, see also supplementary table one for site metadata. Additionally there are two negative controls, and positive control DNA mixtures of 10 and 15 species as described in the paper.<br> </p>
Data for manuscript Marmet, Studer, Lemoine, Grazioli, Bertholet & Gmel (2019). Reconsidering the associations between self-reported alcohol use disorder and mental health problems in the light of co-occurring addictions in young Swiss men. Plos One. DOI: 10.1371/journal.pone.0222806.
<p>Dataset for the manuscript Marmet, Studer, Lemoine, Grazioli, Bertholet & Gmel (2019). Reconsidering the associations between self-reported alcohol use disorder and mental health problems in the light of co-occurring addictions in young Swiss men. Plos One. DOI: 10.1371/journal.pone.0222806.</p> <p>The dataset contains all data needed to reproduce the results in the above cited manuscript. Variable description and labels can be found in the codebook. For further information on the instruments used please refer to the manuscript.</p> <p>The data was collected between April 2016 and March 2018 in Switzerland by the C-SURF study (<a href="http://www.c-surf.ch">www.c-surf.ch</a>). Participants were on average 25 years old when they answered the questionnaires. The final sample size used in the manuscript is 5516. Please note that the dataset contains 25 datasets created with multiple imputation, therefore there are no missing values in the dataset.</p> <p>The research protocol for this study was approved by the Human Research Ethics Committee of the Canton Vaud (Protocol No. 15/07). Data collection was funded by the Swiss National Science Foundation (FN 33CSC0-122679, FN 33CS30_139467, FN 33CS30_148493)</p>
Table of associated Legendre functions of the first kind for values on the real axis
<p>This data set is a tabulation of associated Legendre functions of the first, sometimes called the regular solutions, computed for values on the real axis ranging from 0.0 to 10.0.</p> <p>It was created by a new program which has been implemented in C++ using template meta programming, to compute associated Legendre functions of the first and second kind of integer order (l) and degree (m) and complex argument (z). The mathematical equations, along with a short table of values, are given the book (see page 118 and following) </p> <p> Shanjie Zhang and Jianming Jin, Computation of Special Functions,<br> publishers: Wiley, 1996, ISBN: 0-471-11963-6,<br> LC: QA351.C45.</p> <p>The output from this new program has been verified against the tables printed in the book.</p> <p>This data set is provided because</p> <p> i) it covers a wider range of arguments than published in the tables in the book </p> <p> ii) it has many more l,m values than the tables in the book</p> <p>Note that this data set was computed using data type long double on an Intel CPU. </p>
Table of associated Legendre functions of the second kind for values on the real axis
<p>This dataset is a tabulation of associated Legendre functions of the second, sometimes called the irregular solutions, computed for values on the real axis ranging from 0.0 to 10.0.</p> <p>It was created by a new program which has been implemented in C++ using template meta programming, to compute associated Legendre functions of the first and second kind of integer order (l) and degree (m) and complex argument (z). The mathematical equations, along with a short table of values, are given the book (see page 118 and following) </p> <p> Shanjie Zhang and Jianming Jin, Computation of Special Functions,<br> publishers: Wiley, 1996, ISBN: 0-471-11963-6,<br> LC: QA351.C45.</p> <p>The output from this new program has been verified against the tables printed in the book.</p> <p>This dataset is provided because</p> <p> i) it covers a wider range of arguments than published in the tables in the book </p> <p> ii) it has many more l,m values than the tables in the book</p> <p>Note that this data set was computed using data type long double on an Intel CPU. </p> <p> </p>
Impact Areas and Dynamical Features associated with Mediterranean Cyclones (1980-2019)
<p>The dataset includes NetCDF files of Impact Areas and Dynamical Features associated with Mediterranean Cyclones (henceforth MedCyclones).</p> <p>MedCyclone tracks correspond to confidence-level 5 tracks from Flaounas et al. (2023), <a href="https://doi.org/10.5194/wcd-4-639-2023">https://doi.org/10.5194/wcd-4-639-2023</a>.</p> <p>Temporal frequency: 6h (00, 06, 12, 18 UTC)<br>Years: 1980 – 2019<br>Spatial resolution: 0.5 deg<br>Grid extension: 0-70N, 40W-65E</p> <p> </p> <h2>Dynamical Features</h2> <p>Files "dynfeats_bool_rmax2000_YYYY.nc" include the following list of variables, describing connected boolean objects:</p> <ul> <li><strong>r_500</strong>, <strong>r_1000</strong>: central areas of fixed 500 or 1000 km radius around MedCyclone centres;</li> <li><strong>WCB</strong>: warm conveyor belts related to MedCyclones (i.e., overlapping with r_500 in at least one grid point). Each <strong>WCB</strong> is eventually separated into inflow (<strong>WCBin</strong>, up to 800 hPa) and ascent (<strong>WCBout</strong>, between 800 and 400 hPa) regions. Ref. at <a href="https://doi.org/10.1175/JCLI-D-12-00720.1">https://doi.org/10.1175/JCLI-D-12-00720.1</a>, <a href="https://doi.org/10.5194/wcd-5-537-2024">https://doi.org/10.5194/wcd-5-537-2024</a>;</li> <li><strong>fronts</strong>: cold fronts related to MedCyclones (i.e., overlapping with r_500 in at least one grid point). Ref. at <a href="https://doi.org/10.5194/gmd-17-6137-2024">https://doi.org/10.5194/gmd-17-6137-2024</a>;</li> <li><strong>DI</strong>: dry instrusions related to MedCyclones (i.e., overlapping with r_1000 in at least one grid point). Ref. at <a href="https://doi.org/10.1175/JCLI-D-16-0782.1">https://doi.org/10.1175/JCLI-D-16-0782.1</a>;</li> <li><strong>r_1000_Nodynfeat</strong>: the central 1000 km area excluding regions of MedCyclone WCB, fronts and DI objects.</li> </ul> <p>The criteria for the identification of WCB, fronts and DI objects are described in Section 2.3 of Portal et al. (2024), <a href="https://doi.org/10.5194/wcd-5-1043-2024">https://doi.org/10.5194/wcd-5-1043-2024</a>.</p> <p>Additionally, we note that :<br>i. a weaker overlap constraint was used to associate DI objects to MedCyclones (r_1000 compared to r_500 for WCB and fronts objects) because of the relatively large distance of the DI airstream from the cyclone centre;<br>ii. in this dataset, all connected objects related to MedCyclones are cropped within a 2000 km area circle from the cyclone centre for two reasons. Firstly, the dynamical-feature related surface impacts usually weaken with the distance from the cyclone centre. Secondly, to cut connected objects composed by multiple overlapping features of the same kind - this often happens for fronts in summer because of their high detection density. Far from the cyclone centre, these objects are usually unrelated with the MedCyclone circulation.</p> <p> </p> <h2>Impact Areas</h2> <p>Files "IAs_bool_rmax2000_YYYY.nc" include boolean impact areas, combining a central area (r_1000 or r_500) and cyclone-related WCB, CF and DI objects. The three types of impact area are described in the following :</p> <ol> <li><strong>IA01</strong> is composed by a 1000 km radius circle around the cyclone centre (r_1000) extended by cyclone-related WCB, fronts and DI;</li> <li><strong>IA02</strong> is composed by a 500 km radius circle around the cyclone centre (r_500) extended by cyclone-related WCB, fronts and DI</li> <li><strong>IA03</strong> is composed by a 500 km radius circle around the cyclone centre (r_500) extended by cyclone-related WCB and fronts (DI is neglected).</li> </ol> <p>As discussed in Section 3.1 and Appendix A of Portal et al. (2024) (<a href="https://doi.org/10.5194/wcd-5-1043-2024">https://doi.org/10.5194/wcd-5-1043-2024</a>), IA01, composed by a central area of 1000 km, is adequate for intercepting long-range wind impacts associated with MedCyclones. IA02 and IA03, on the contrary, are better devised for detecting impacts expected at shorter distances from the cyclone centre, such as rainfall, thunderstorm and storm surges. In particular, IA03 neglects the DI region, which is normally of little interest for cyclone-related moist processes, involved in producing precipitation. Noetheless, DI remains relevant for the identification of strong cyclone-related winds.</p> <p> </p> <h3>Case Studies</h3> <p>A pdf file providing the visualisation and description of impact areas and dynamical features of all MedCyclones occurring in 1980 is available at the link <a href="https://boris.unibe.ch/192315/">https://boris.unibe.ch/192315/</a>. Note that in the examples the dynamical features are not cropped at 2000 km from the cyclone centres, as for the present dataset. </p> <p>Note that many of the "Annotations and Limitations" listed below derive from the attentive analysis of these study cases.</p> <h3>Annotations and limitations</h3> <ul> <li>In the case of more than one MedCyclone centre per timestep, the dasaset does not distinguish the impact areas / dynamical features associated with each centre.</li> <li>Because of the automated criteria for associating WCB, fronts and DI objects to MedCyclones, at times objects close to the centre but unrelated to the MedCyclone's circulation, are considered to be cyclone-related and included in the impact area.</li> <li>Elaborating on the point above, at times fronts responsible for Mediterranean cyclogenesis (and not produced by the cyclonic circulation itself) are included in the MedCyclone impact area.</li> <li>When computing statistics over a long time interval (e.g., climatology), the effects of erroneous associations of dynamical features to MedCyclone impact areas are attenuated by the aggregation of large quantity of data. </li> <li>Over a long time interval (e.g., climatology) the choice of a 1000 km fixed-radius impact area provides similar statistics to IA01, although in the first case it is not possible to isolate the role played by the different features composing the MedCyclones.</li> </ul>
PWAS Hub: exploring gene-based associations of complex diseases with sex dependency - backing data
<p>The contents of the PWAS database is presented on <a title="The PWAS hub" href="https://pwas.huji.ac.il/?ver=2" target="_blank" rel="noopener">pwas.huji.ac.il</a>. The frontend and backend were build on top of a dynamical databse system. Please consult the direct API for PWAS if you wish to query the database directly: <a title="The PWAS API" href="https://pwas.huji.ac.il/API?ver=2" target="_blank" rel="noopener">pwas.huji.ac.il/API</a></p> <p>This is a PostgreSQL dump file that was created using <code>pg_dump</code>, the backup/restore procedure for PostgreSQL. To restore this into PostgreSQL do</p> <p>[a] create a database</p> <p><code>createdb DATABASE</code></p> <p>[b] on the terminal run</p> <p><code>pg_restore -vcC -h HOST -p PORT -d DATABASE < pwas_dump.20220628.psql</code></p> <p>The HOST and PORT are determined by your installation and DATABASE is given by you in step [a] abobe.</p> <p> </p> <p>To access the PWAS tables, look for table names that begin with <code>pwasAPI_</code></p> <p>A possible query to the database may look like this:</p> <p><code>SELECT * FROM "pwasAPI_genediseasestatpwas" WHERE uniprot_id = 'P09914' AND disease = 'C44';</code></p> <p>This query lists the data that associate uniprot id <strong>P09914</strong> (gene symbol IFIT1) and disease ICD-10 <strong>C44</strong> (Other malignant neoplasms of skin)</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.