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147 results for “Bacterial pathogens”
Supplementary Material for Ph.D. thesis: "Development of a data-intensive centralized system for surveillance and outbreak investigation of bacterial pathogens using whole-genome sequencing""
<p>Supplementary material for Ph.D. thesis.</p>
Data from: Dynamics of short- and long-term association between a bacterial plant pathogen and its arthropod vector
The dynamics of association between pathogens and vectors can strongly influence epidemiology. It has been proposed that wilt disease epidemics in cucurbit populations are sustained by persistent colonization of beetle vectors (Acalymma vittatum) by the bacterial phytopathogen Erwinia tracheiphila. We developed a qPCR method to quantify E. tracheiphila in whole beetles and frass and used it to assess pathogen acquisition and retention following variable exposure to infected plants. We found that (i) E. tracheiphila is present in frass in as little as three hours after feeding on infected plants and can be transmitted with no incubation period by vectors given brief exposure to infected plants, but also by persistently colonized vectors several weeks following exposure; (ii) duration of exposure influences rates of long-term colonization; (iii) frass infectivity (assessed via inoculation experiments) reflects bacterial levels in frass samples across time; and (iv) vectors rarely clear E. tracheiphila infections, but suffer no apparent loss of fitness. These results describe a pattern conducive to the effective maintenance of E. tracheiphila within cucurbit populations.
Pathogen Identification of Bacterial Pneumonia Via DNA Detection
ClinicalTrials.gov study NCT00567827. IPD Sharing: Not stated. Countries: 0. Publications: 1.
Pharmacodynamic of Ceftaroline and Levofloxacin Against Pathogens Associated With Community Acquired Bacterial Pneumonia
ClinicalTrials.gov study NCT01524302. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Data from: Polylysogeny magnifies competitiveness of a bacterial pathogen in vivo
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Data from: Bacterial cooperation causes systematic errors in pathogen risk assessment due to the failure of the independent action hypothesis
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Data from: Dynamics of short- and long-term association between a bacterial plant pathogen and its arthropod vector
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Data from: Mutations in bacterial genes induce unanticipated changes in the relationship between bacterial pathogens in experimental otitis media
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Data from: Diverse mechanisms of metaeffector activity in an intracellular bacterial pathogen, Legionella pneumophila
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Data from: Parasites and competitors suppress bacterial pathogen synergistically due to evolutionary trade-offs
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Data from: Identification of a bacterial pathogen associated with Porites white patch syndrome in the Western Indian Ocean
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Data from: Pre-adapting parasitic phages to a pathogen leads to increased pathogen clearance and lowered resistance evolution with Pseudomonas aeruginosa cystic fibrosis bacterial isolates
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Transcriptional responses of resistant and susceptible fish clones to the bacterial pathogen Flavobacterium psychrophilum
GEO Series GSE35448. Oncorhynchus mykiss. 23 samples. Type: Expression profiling by array.
Transcriptomic analysis of the early phase of BoMac cell stimulation with a viral and a bacterial pathogen associated molecular patterns.
GEO Series GSE106843. Bos taurus. 9 samples. Type: Expression profiling by high throughput sequencing.
Bacterial nucleoside catabolism controls quorum sensing and commensal-to-pathogen transition in the Drosophila gut
GEO Series GSE140194. Pectobacterium carotovorum. 2 samples. Type: Expression profiling by high throughput sequencing.
Microarray analysis of med14, med16, npr1, and wild type (Col-0) infected with the avirulent bacterial pathogen Pst DC3000/avrRpt2
GEO Series GSE45214. Arabidopsis thaliana. 24 samples. Type: Expression profiling by array.
Using next generation sequencing to compare gene expression of wild type and Δcsp1 mutant of bacterial plant pathogen Xylella fastidiosa strain Stag's Leap
GEO Series GSE184594. Xylella fastidiosa subsp. fastidiosa. 11 samples. Type: Expression profiling by high throughput sequencing.
RNA Atlas of Bacterial Human Pathogens Uncovers Stress Dynamics Linked to Bacterial Infections
GEO Series GSE152295. Campylobacter jejuni; Francisella tularensis; Acinetobacter baumannii; Neisseria gonorrhoeae; Escherichia coli; Shigella flexneri; Aggregatibacter actinomycetemcomitans; Haemophilus influenzae; Staphylococcus aureus subsp. aureus MRSA252; Staphylococcus aureus subsp. aureus MSSA476; Helicobacter pylori; Enterococcus faecalis; Neisseria meningitidis; Staphylococcus epidermidis; Streptococcus pyogenes; Listeria monocytogenes; Salmonella enterica; Achromobacter xylosoxidans; Borreliella burgdorferi; Pseudomonas aeruginosa; Legionella pneumophila; Klebsiella pneumoniae; Yersinia pseudotuberculosis; Vibrio cholerae; Streptococcus suis; Streptococcus agalactiae; Streptococcus pneumoniae; Mycobacterium tuberculosis; Burkholderia pseudomallei. 1122 samples. Type: Expression profiling by high throughput sequencing.
Determination of an Interaction Network between an Extracellular Bacterial Pathogen and the Human Host
GEO Series GSE130901. [Haemophilus] ducreyi; Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
Large conjugative plasmid mediates chromosomal Type VI secretion system cross transcriptional regulation and diverse bacterial pathogenicity [RNA-Seq]
GEO Series GSE277925. Acinetobacter baumannii. 9 samples. Type: Expression profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.