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ShareScore release 0.9.0
Dataset results
68 results for “De novo genome assembly”
De novo assembly of the polyhydroxybutyrate (PHB) producer Azohydromonas lata strain H1 (Pelleroni and Pelleroni, 1978) genome and genomic analysis of PHB production machinery
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Data from: De novo genome assembly of Camptotheca acuminata, a natural source of the anti-cancer compound camptothecin
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De novo genome assembly of faba bean (Vicia faba L.) leaf transcriptome provide novel insights into the drought stress tolerance mechanisms
GEO Series GSE292422. Vicia faba. 6 samples. Type: Expression profiling by high throughput sequencing.
De Novo Assembly of Plasmodium knowlesi Genomes From Clinical Samples Explains the Counterintuitive Intrachromosomal Organization of Variant SICAvar and kir Multiple Gene Family Members
<p>Published DOI: <a href="https://doi.org/10.3389/fgene.2022.855052">https://doi.org/10.3389/fgene.2022.855052</a></p> <p>Supporting data for the attached publication. De Novo assembled genomes of <em>Plasmodium knowlesi</em> generated using Nanopore long reads. Supporting statistical results are included. Variant call files from structural variant calls are attached for each genome. Additionally, statistical results from BUSCO, QUAST, Pomoxis and AGAT are included. Annotation files in GFF3 format including further analyses of these annotation files are attached. Scripts for post analysis are attached with scripts for data generation presented on Github repository: "Pknowlesi_denovo_genome_assembly"</p>
De novo assembly and annotation of the singing mouse genome
GEO Series GSE212957. Scotinomys teguina. 17 samples. Type: Expression profiling by high throughput sequencing; Other.
De novo assembled individual genome does not show advantage against standard reference genome: a demonstration of Chinese Han Population
GEO Series GSE121013. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes
GEO Series GSE165787. Zea mays. 104 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
High quality de novo long read genome assembly and annotation of resistance protein families for saw toothed grain beetle-Supplementary
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.