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112 results for “EOL”
EOL Dynamic Hierarchy: EOL Dynamic Hierarchy Active Version
<p>Dynamic Hierarchy version that is currently active on the <a title="EOL" href="http://eol.org/">EOL</a> site.<span> </span></p> <p><span>The Encyclopedia of Life (EOL, <a title="eol.org" href="http://eol.org/">eol.org</a>) aggregates biodiversity information from more than 400 sources and provides access to the data through taxon pages, visual query and application programming interfaces. Scientific names are essential elements of the data integration infrastructure, but their shortcomings as key identifiers are well documented. Complex automated workflows and continuous manual curation are required to address idiosyncrasies of source taxonomies, variation in data quality, and conflicting taxonomic opinions. To achieve a harmonized taxonomic view of EOL content, names from data sources are mapped to a dynamic reference hierarchy</span><span> using an algorithm that leverages canonical name strings, hierarchical information (ancestry, descendants), taxonomic ranks, synonym data, and author strings. Names that cannot be associated with a reference taxon are still accessible, but their unmapped status excludes them and any associated content from certain core EOL functions. For more information about the EOL taxonomy, see <a title="EOL Dynamic Hierarchy" href="https://eol.org/docs/eol-dynamic-hierarchy" target="_blank" rel="noopener">EOL Dynamic Hierarchy</a></span></p>
EOL Dynamic Hierarchy Erebidae Patch (ERE)
<p>Updated Erebidae classification covering subfamilies, tribes, subtribes, and genera. Compiled from multiple sources:</p> <p>Da Costa, MA, Weller, SJ (2005). Phylogeny and classification of Callimorphini (Lepidoptera: Arctiidae: Arctiinae). Zootaxa 1025:1–94.</p> <p>De Prins J. & De Prins W. 2011–2019. Afromoths, online database of Afrotropical moth species (Lepidoptera). World Wide Web electronic publication: <a href="http://www.afromoths.net/" target="_blank" rel="nofollow noopener">http://www.afromoths.net</a></p> <p>de Vos, R. 2011. Nicetosoma Gen. Nov., a New Genus for the ‘Spilosoma’ Niceta Group of Species East of the Weber Line (Lepidoptera: Erebidae, Arctiinae, Arctiini). Suara Serangga Papua 5 (4): 109-144.</p> <p>Dubatolov, VV (2010). Tiger-moths of Eurasia (Lepidoptera, Arctiidae) (Nyctemerini by Rob de Vos & Vladimir V. Dubatolov). Neue Entomologische Nachrichten 65:1–106.</p> <p>Edwards, ED (1996). Arctiidae. In: Nielsen E.S., Edwards E.D. & Rangsi T.V. (eds) Checklist of the Lepidoptera of Australia, Monographs on Australian Lepidoptera: 278–286.</p> <p>Ferguson DC, Opler PA (2006) Checklist of the Arctiidae (Lepidoptera: Insecta) of the continental United States and Canada. Zootaxa 1299:1–33.</p> <p>Fibiger, Michael (2007). Revision of the Micronoctuidae (Lepidoptera: Noctuoidea). Part 1, Taxonomy of the Pollexinae. Zootaxa 1567:1-116.</p> <p>Fibiger, Michael (2008). Revision of the Micronoctuidae (Lepidoptera: Noctuoidea). Part 2, Taxonomy of the Belluliinae, Magninae and Parachrostiinae. Zootaxa 1867:1-136.</p> <p>Fibiger, Michael (2010). Revision of the Micronoctuidae (Lepidoptera: Noctuoidea) Part 3, Taxonomy of the Tactusinae. Zootaxa 2583:1–119.</p> <p>Fibiger, Michael (2011). Revision of the Micronoctuidae (Lepidoptera: Noctuoidea). Part 4, Taxonomy of the subfamilies Tentaxinae and Micronoctuinae. Zootaxa 2842:1–188.</p> <p>Fibiger, Michael, Hacker, Hermann (2005). Systematic List of the Noctuoidea of Europe (Notodontidae, Nolidae, Arctiidae, Lymantriidae, Erebidae, Micronoctuidae, and Noctuidae). Esperlana 11:93–205.</p> <p>Fibiger, Michael, Han, Hui-Lin & Kononenko, Vladimir S. (2011). Five new species and one new subspecies of Micronoctuidae from China, with a checklist of Chinese species, including Taiwan (Lepidoptera: Noctuoidea, Micronoctuidae). Zootaxa. 2777: 1–13.</p> <p>Fibiger, Michael, Kononenko, Vladimir S. (2008). Revision of the Micronoctuidae species occurring in the Russian Far East and neighbouring countries with description of a new species (Lepidoptera, Noctuoidea). Zootaxa 1890:50-58.</p> <p>Fibiger, Michael, Lafontaine, J. Donald (2005). A review of the higher classification of the Noctuoidea (Lepidoptera) with special reference to the Holarctic fauna. Esperiana 11:7-92.</p> <p>Goodger DT, Watson A (1995) The Afrotropical Tiger-Moths. An illustrated catalogue, with generic diagnosis and species distribution, of the Afrotropical Arctiinae (Lepidoptera: Arctiidae). Apollo Books Aps.: Denmark, 55 pp.</p> <p>Han, H. L., & Kononenko, V. S. (2017). Two replacement names of the genus group of Micronoctuini and a new species of the genus Tentaxus Han & Kononenko from Sabah, East Malaysia (Lepidoptera, Erebidae, Hypenodinae). Taxonomic study of Micronoctuini. Contribution I. Zootaxa, 4362(2), 259. doi:10.11646/zootaxa.4362.2.5</p> <p>Holloway, Jeremy D. (1988). The Moths of Borneo Part 6: Family Arctiidae, subfamilies Syntomine, Euchromiinae Arciinae; Noctuidae misplaced in Arctiidae. The Moths of Borneo. Southdene Sdn. Bhd.</p> <p>Holloway, Jeremy D. (1999). The Moths of Borneo: Family Lymantriidae. Malayan Nature Journal 53:1-188.</p> <p>Holloway, Jeremy D. (2001). The Moths of Borneo Part 7: Family Arctiidae, Subfamily Lithosiinae. The Moths of Borneo. Southdene Sdn. Bhd.</p> <p>Holloway, Jeremy D. (2005) The Moths of Borneo Parts 15 & 16: Family Noctuidae, Subfamily Catocalinae" The Moths of Borneo. Southdene Sdn. Bhd.</p> <p>Holloway, Jeremy D. (2008). The Moths of Borneo: family Noctuidae, subfamilies Rivulinae, Phytometrinae, Herminiinae, Hypeninae and Hypenodinae. Malayan Nature Journal 60:1-267.</p> <p>Homziak, Nicholas T., Breinholt, Jesse W., Kawahara, Akito Y. (2016). A historical review of the classification of Erebinae (Lepidoptera: Erebidae). Zootaxa 4189(3):516–542. doi:<a href="https://doi.org/10.11646/zootaxa.4189.3.4.">10.11646/zootaxa.4189.3.4.</a></p> <p>Kaleka, AS, Rose, HS (2002). Inventory of species of Miltochrista Hübner (Lithosiinae: Arctiidae: Lepidoptera) from northwestern and northeastern India. Zoos__ Print Journal 17 (8):853-856.</p> <p>Kirti, J.S. & Singh, N. (2016) Arctiid Moths of India. Vol. 2. Nature Books India, New Delhi, 214 pp.</p> <p>Kononenko, VS, Pinratana, A (2013). Moths of Thailand Vol. 3, Part 2. Noctuoidea. An illustrated Catalogue of Erebidae, Nolidae, Euteliidae, and Noctuidae (Insecta: Lepidoptera) in Thailand. Bangkok: Brothers of St. Gabriel in Thailand.</p> <p>Lafontaine, J. Donald, Fibiger, Michael (2006). Revised higher classification of the Noctuoidea (Lepidoptera) Canadian Entomologist 138:610-635.</p> <p>Lafontaine, Donald; Walsh, J. Bruce (2010). A review of the subfamily Anobinae with the description of a new species of Baniana Walker from North and Central America (Lepidoptera, Erebidae, Anobinae). ZooKeys 39:3–11. doi:<a href="https://doi.org/10.3897/zookeys.39.428">10.3897/zookeys.39.428</a></p> <p>Lafontaine, Donald, Schmidt, Christian (2010). Annotated check list of the Noctuoidea (Insecta, Lepidoptera) of North America north of Mexico. ZooKeys 40:1-239. doi:<a href="https://doi.org/10.3897/zookeys.40.414">10.3897/zookeys.40.414</a></p> <p>Lafontaine, J. Donald; Schmidt, B. Christian (2013). Additions and corrections to the check list of the Noctuoidea (Insecta, Lepidoptera) of North America north of Mexico. ZooKeys. 264:227–236. doi:<a href="https://10.0.15.57/zookeys.264.4443">10.3897/zookeys.264.4443</a></p> <p>Savela, Markku. 2020. Lepidoptera and Some Other Life Forms. World Wide Web electronic publication: <a href="https://ftp.funet.fi/pub/sci/bio/life/intro.html" target="_blank" rel="nofollow noopener">https://ftp.funet.fi/pub/sci/bio/life/intro.html</a></p> <p>Van Nieukerken, E.J., Kaila, L., Kitching, I.J., Kristensen, N.P., Lees, D.C., Minet, J., Mitter, C., Mutanen, M., Regier, J.C., Simonsen, T.J. and Wahlberg, N., 2011. Order Lepidoptera Linnaeus, 1758. In: Zhang, Z.-Q.(Ed.) Animal biodiversity: an outline of higher-level classification and survey of taxonomic richness. Zootaxa, 3148(1):212-221.</p> <p>Volynkin, Anton V. 2016. On the generic placement and taxonomic status of some Miltochrista taxa described by Franz Daniel (Lepidoptera, Erebidae, Arctiinae) Zootaxa 4179(2):244-252.</p> <p>Volynkin, Anton V. 2017. Description of a New Species of Miltochrista Hübner from Vietnam, with Eight New Combinations (Lepidoptera, Erebidae, Arctiinae). Zootaxa 4286(1):145. <a href="https://doi.org/10.11646/zootaxa.4286.1.13" target="_blank" rel="nofollow noopener">https://doi.org/10.11646/zootaxa.4286.1.13</a>.</p> <p>Volynkin, Anton V., Singh, N., Cerný, K., Kirti, J. S., Datta, H. S. 2020. Revision of the Miltochrista obliquilinea species-group, with descriptions of four new species (Lepidoptera, Erebidae, Arctiinae, Lithosiini) Zootaxa 4780(3):448-470.</p> <p>Watson A (1971) An illustrated Catalog of the Neotropic Arctiinae type in the United States National Museum (Lepidoptera: Arctiidae) Part 1. Smithsonian Contributions to Zoology 50:1–361</p> <p>Zahiri, Reza; et al. (2011). Molecular phylogenetics of Erebidae (Lepidoptera, Noctuoidea). Systematic Entomology 37:102–124. doi:<a href="https://doi.org/10.1111/j.1365-3113.2011.00607.x">10.1111/j.1365-3113.2011.00607.x</a></p> <p>Zahiri, Reza; et al. (2011). A new molecular phylogeny offers hope for a stable family level classification of the Noctuoidea (Lepidoptera). Zoologica Scripta 40:158–173. doi:<a href="https://doi.org/10.1111/j.1463-6409.2010.00459.x">10.1111/j.1463-6409.2010.00459.x</a></p> <p>Zahiri, Reza; et al. (2012). Molecular phylogenetics of Erebidae (Lepidoptera, Noctuoidea). Systematic Entomology 37:102–124. doi:<a href="https://doi.org/10.1111/j.1365-3113.2011.00607.x]">10.1111/j.1365-3113.2011.00607.x</a></p> <p>Zahiri, Reza; et. al (2013). Relationships among the basal lineages of Noctuidae (Lepidoptera, Noctuoidea) based on eight gene regions. Zoologica Scripta 42:488–507. doi:<a href="https://doi.org/10.1111/zsc.12022">10.1111/zsc.12022</a></p> <p>Zaspel, JM, Branham, MA (2008). World Checklist of Tribe Calpini (Lepidoptera: Noctuidae: Calpinae). Insecta Mundi 0047:1-15.</p>
EOL Dynamic Hierarchy: Dynamic Hierarchy Version 2.1
Currently active Dynamic Hierarchy and archived versions. For more information, see: <p></p>https://eol.org/docs/eol-dynamic-hierarchy<p></p>The Encyclopedia of Life (EOL, eol.org) aggregates biodiversity information from more than 400 sources and provides access to the data through taxon pages, visual query and application programming interfaces. Scientific names are essential elements of the data integration infrastructure, but their shortcomings as key identifiers are well documented (Patterson et al., 2016). Complex automated workflows and continuous manual curation are required to address idiosyncrasies of source taxonomies, variation in data quality, and conflicting taxonomic opinions. To achieve a harmonized taxonomic view of EOL content, names from data sources are mapped to a dynamic reference hierarchy ([see current version here](<p></p>https://opendata.eol.org/dataset/tram-807-808-809-810-dh-v1-1/resource/00adb47b-57ed-4f6b-8f66-83bfdb5120e8)) using an algorithm that leverages canonical name strings, hierarchical information (ancestry, descendants), taxonomic ranks, synonym data, and author strings. Names that cannot be associated with a reference taxon are still accessible, but their unmapped status excludes them and any associated content from certain core EOL functions. For more information about the EOL taxonomy, see [EOL Dynamic Hierarchy](<p></p>https://eol.org/docs/eol-dynamic-hierarchy)
Publications using EOL structured data: 2019
found primarily via Google Scholar, searching by mentions in the methods sections. Citing EOL is not required when using EOL-hosted records; only the primary source must be cited. Thus, these lists may not be exhaustive.<p></p>For questions or use cases calling for large, multi-use aggregate data files, please visit the EOL Services forum at <p></p>http://discuss.eol.org/c/eol-services
Publications using EOL structured data: 2018
found primarily via Google Scholar, searching by mentions in the methods sections. Citing EOL is not required when using EOL-hosted records; only the primary source must be cited. Thus, these lists may not be exhaustive.<p></p>For questions or use cases calling for large, multi-use aggregate data files, please visit the EOL Services forum at <p></p>http://discuss.eol.org/c/eol-services
Publications using EOL structured data: 2020
found primarily via Google Scholar, searching by mentions in the methods sections. Citing EOL is not required when using EOL-hosted records; only the primary source must be cited. Thus, these lists may not be exhaustive.<p></p>For questions or use cases calling for large, multi-use aggregate data files, please visit the EOL Services forum at <p></p>http://discuss.eol.org/c/eol-services
Publications using EOL structured data: 2015-2017
found primarily via Google Scholar, searching by mentions in the methods sections. Citing EOL is not required when using EOL-hosted records; only the primary source must be cited. Thus, these lists may not be exhaustive.<p></p>For questions or use cases calling for large, multi-use aggregate data files, please visit the EOL Services forum at <p></p>http://discuss.eol.org/c/eol-services
All body size data (EOL v3 test): body size
All records for Body size, run Aug. 7 Query in EOL beta platform: https://beta.eol.org/terms/search_results?term_query%5Bclade_id%5D=&term_query%5Bfilters_attributes%5D%5B0%5D%5Bop%5D=is_any&term_query%5Bfilters_attributes%5D%5B0%5D%5Bpred_uri%5D=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FOBA_VT0100005&term_query%5Bresult_type%5D=record
eol_data-2016-12-08 (EOL v2): split.tgz-ac
[eol_data-2016-12-08.tgz] is a big file. So we split them into four smaller chunks. You can download these four files below on your local and merge them to get [eol_data-2016-12-08.tgz]. This is the command to merge once you__ve downloaded all four parts: `$ cat split.tgz-* | tar xz` Once you get [eol_data-2016-12-08.tgz], extract it to get these four TSVs: * hierarchy_entries.tsv * data_objects.tsv * data_objects_additional_attribution.tsv * data_objects_taxon_concepts.tsv<p></p>3 of 4
eol_data-2016-12-08 (EOL v2): split.tgz-ab
[eol_data-2016-12-08.tgz] is a big file. So we split them into four smaller chunks. You can download these four files below on your local and merge them to get [eol_data-2016-12-08.tgz]. This is the command to merge once you__ve downloaded all four parts: `$ cat split.tgz-* | tar xz` Once you get [eol_data-2016-12-08.tgz], extract it to get these four TSVs: * hierarchy_entries.tsv * data_objects.tsv * data_objects_additional_attribution.tsv * data_objects_taxon_concepts.tsv<p></p>2 of 4
eol_data-2016-12-08 (EOL v2): split.tgz-aa
[eol_data-2016-12-08.tgz] is a big file. So we split them into four smaller chunks. You can download these four files below on your local and merge them to get [eol_data-2016-12-08.tgz]. This is the command to merge once you__ve downloaded all four parts: `$ cat split.tgz-* | tar xz` Once you get [eol_data-2016-12-08.tgz], extract it to get these four TSVs: * hierarchy_entries.tsv * data_objects.tsv * data_objects_additional_attribution.tsv * data_objects_taxon_concepts.tsv<p></p>1 of 4
eol_data-2016-12-08 (EOL v2): split.tgz-ad
[eol_data-2016-12-08.tgz] is a big file. So we split them into four smaller chunks. You can download these four files below on your local and merge them to get [eol_data-2016-12-08.tgz]. This is the command to merge once you__ve downloaded all four parts: `$ cat split.tgz-* | tar xz` Once you get [eol_data-2016-12-08.tgz], extract it to get these four TSVs: * hierarchy_entries.tsv * data_objects.tsv * data_objects_additional_attribution.tsv * data_objects_taxon_concepts.tsv<p></p>4 of 4
Mammal body size (EOL v3 test): mammal body size
A sample of data downloaded from the new EOL search interface. All available data for mammals for any measure of body size, with full metadata. https://beta.eol.org/terms/search_results?term_query%5Bclade_id%5D=1642&term_query%5Bfilters_attributes%5D%5B0%5D%5Bop%5D=is_any&term_query%5Bfilters_attributes%5D%5B0%5D%5Bpred_uri%5D=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FOBA_VT0100005&term_query%5Bresult_type%5D=record
EOL Stats for species level pages: EOL stats for species-level pages
<p>Basic EOL stats per species: A- number of non-map media; B- number of articles; C- number of different Subjects found among the articles; D- number of languages found among the articles; E- number of trait records; F- number of measurementTypes found among the trait records; G- number of maps, including GBIF; H- number of languages found among the common names; R- overall page richness current draft, page richness score: R=(A/20 with a max of 1) + (C/8 with a max of 1) + (D/10 with a max of 1) + (G/2 with a max of 1) + (H/10 with a max of 1)+3*(F/12 with a max of 1) +2 IF the page has at least one of each: map, non-map media, article and data record</p> <p>https://eol-jira.bibalex.org/browse/DATA-1807 For questions or use cases calling for large, multi-use aggregate data files, please visit the EOL Services forum at</p> <p>http://discuss.eol.org/c/eol-services</p>
User Generated Content (EOL v2): taxonomic propagation - image ratings
<p></p>https://eol-jira.bibalex.org/browse/DATA-1786 For questions or use cases calling for large, multi-use aggregate data files, please visit the EOL Services forum at <p></p>http://discuss.eol.org/c/eol-services
User Generated Content (EOL v2): taxonomic propagation - exemplar images
<p></p>https://eol-jira.bibalex.org/browse/DATA-1786 For questions or use cases calling for large, multi-use aggregate data files, please visit the EOL Services forum at <p></p>http://discuss.eol.org/c/eol-services
User Generated Content (EOL v2): user activity collections (json format)
<p></p>https://eol-jira.bibalex.org/browse/DATA-1780 Data as of Oct 28, 2018 For questions or use cases calling for large, multi-use aggregate data files, please visit the EOL Services forum at <p></p>http://discuss.eol.org/c/eol-services
User Generated Content (EOL v2): user activity collections
<p></p>https://eol-jira.bibalex.org/browse/DATA-1780 Data as of Oct 28, 2018 For questions or use cases calling for large, multi-use aggregate data files, please visit the EOL Services forum at <p></p>http://discuss.eol.org/c/eol-services
User Generated Content (EOL v2): user exemplar images
<p></p>https://eol-jira.bibalex.org/browse/DATA-1746 Data as of Oct 25, 2018 For questions or use cases calling for large, multi-use aggregate data files, please visit the EOL Services forum at <p></p>http://discuss.eol.org/c/eol-services
User Generated Content (EOL v2): user image ratings
<p></p>https://eol-jira.bibalex.org/browse/DATA-1741 Data as of Oct 25, 2018. For questions or use cases calling for large, multi-use aggregate data files, please visit the EOL Services forum at <p></p>http://discuss.eol.org/c/eol-services
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.