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Dataset results
107 results for “Landscape complexity”
The lncRNA genomic landscape of oligodendrocytes reveals myelination control by a lncOL1/Suz12 complex in the CNS [ChIPSeq]
GEO Series GSE82165. Rattus norvegicus. 1 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
The lncRNA genomic landscape of oligodendrocytes reveals myelination control by a lncOL1/Suz12 complex in the CNS [RNASeq_lncOL1]
GEO Series GSE82210. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
Placing the HIRA histone chaperone complex in the chromatin landscape
GEO Series GSE45025. Homo sapiens. 15 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other; Expression profiling by array.
Cooperation of chromatin remodeling SWI/SNF complex and pioneer factor AP1 shapes 3D enhancer landscapes [HiChIP]
GEO Series GSE175529. Homo sapiens. 6 samples. Type: Other.
A complex regulatory landscape involved in the development of external genitals [ATAC-Seq]
GEO Series GSE138513. Mus musculus. 15 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Mubritinib Targets the Electron Transport Chain Complex I and Reveals the Landscape of OXPHOS Dependency in Acute Myeloid Leukemia
GEO Series GSE130906. Homo sapiens. 3 samples. Type: Other.
The genomic landscape of the fungal specific SWI/SNF complex subunit, Snf6, in Candida albicans
GEO Series GSE106278. Candida albicans. 9 samples. Type: Expression profiling by array; Genome binding/occupancy profiling by genome tiling array.
Cooperation of chromatin remodeling SWI/SNF complex and pioneer factor AP1 shapes 3D enhancer landscapes [Histone_modification]
GEO Series GSE175530. Homo sapiens. 16 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Cooperation of chromatin remodeling SWI/SNF complex and pioneer factor AP1 shapes 3D enhancer landscapes
GEO Series GSE196960. Homo sapiens. 92 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Cooperation of chromatin remodeling SWI/SNF complex and pioneer factor AP1 shapes 3D enhancer landscapes
GEO Series GSE175534. Homo sapiens. 62 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
The lncRNA genomic landscape of oligodendrocytes reveals myelination control by a lncOL1/Suz12 complex in the CNS
GEO Series GSE82211. Mus musculus; Rattus norvegicus. 11 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Quantitative in vivo analyses reveal a complex pharmacogenomic landscape in lung adenocarcinoma
GEO Series GSE146448. Mus musculus. 13 samples. Type: Other.
RNA-seq analysis generated a comprehensive landscape of transcriptomes and revealed complex patterns of transcripts in Chinese HBV-related hepatocellular carcinoma
GEO Series GSE25599. Homo sapiens. 20 samples. Type: Expression profiling by high throughput sequencing.
Deep RNA sequencing reveal a complex transcriptional landscape of a bat adenovirus.
GEO Series GSE41275. Myotis davidii. 5 samples. Type: Expression profiling by high throughput sequencing.
A transcriptomic analysis reveals increased complexity of the alternative splicing landscape by Nsmce1 overexpression in mouse hippocampal neuronal cell
GEO Series GSE113436. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
A complex regulatory landscape involved in the development of external genitals
GEO Series GSE138514. Mus musculus. 65 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
First-passage times in complex energy landscapes: a case study with nonmuscle myosin II assembly
<p>These are the python scripts and plot data for the following publication: Rick Bebon and Ulrich S Schwarz, First-passage times in complex energy landscapes: a case study with nonmuscle myosin ii assembly. New Journal of Physics, 24(6):063034, 2022.</p> <p>Link to publication: <a title="Link to website" href="https://iopscience.iop.org/article/10.1088/1367-2630/ac78fd">https://iopscience.iop.org/article/10.1088/1367-2630/ac78fd</a></p>
Data from: Long-term evolution on complex fitness landscapes when mutation is weak
Understanding evolution on complex fitness landscapes is difficult both because of the large dimensionality of sequence space and the stochasticity inherent to population-genetic processes. Here I present an integrated suite of mathematical tools for understanding evolution on time-invariant fitness landscapes when mutations occur sufficiently rarely that the population is typically monomorphic and evolution can be modeled as a sequence of well-separated fixation events. The basic intuition behind this suite of tools is that surrounding any particular genotype lies a region of the fitness landscape that is easy to evolve to, while other pieces of the fitness landscape are difficult to evolve to (due to distance, being across a fitness valley, etc.). I propose a rigorous definition for this ``dynamical neighborhood' of a genotype which captures several aspects of the distribution of waiting times to evolve from one genotype to another. The neighborhood structure of the landscape as a whole can be summarized as a matrix, and I show how this matrix can be used to approximate the expected waiting time for certain evolutionary events to occur and to provide an intuitive interpretation to existing formal results on the index of dispersion of the molecular clock.
Molecular Landscape of Complex Lifestyle Modification
ClinicalTrials.gov study NCT06954298. IPD Sharing: YES. Countries: 1. Publications: 0.
Data from: Long-term evolution on complex fitness landscapes when mutation is weak
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.