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81 results for “Lutjanidae”
Figure 3 in The mitochondrial genome of the Yellowtail Snapper Ocyurus chrysurus (Bloch, 1791) (Perciformes: Lutjanidae)
Figure 3. Secondary structure of the tRNA genes in the mitochondrial genome of yellowtail snapper Ocyurus chrysurus.
Data from: High intra-ocean, but limited inter-ocean genetic connectivity in populations of the deep-water oblique-banded snapper Pristipomoides zonatus (Pisces: Lutjanidae)
While many studies have investigated connectivity and subdivision in marine fish occupying tropical, shallow water reef habitats, relatively few have been conducted on commercially important deep-water species in the Indo-Pacific region. Here, we examine spatial and temporal genetic variation in the deep-water oblique-banded snapper Pristipomoides zonatus, collected from eight locations across the Indian and Pacific Oceans. A total of 292 individuals were screened for genetic variation at six nuclear microsatellite loci and the cytochrome c oxidase subunit 1 (COI) mitochondrial DNA (mtDNA) gene. There was evidence of low, but significant genetic differentiation between ocean basins (FCT = 0.009) and no significant divergences between sites within oceans. The lack of population structure within ocean basins suggests P. zonatus has a long pelagic larval duration with high levels of connectivity between populations over large geographical distances (>2000 km). There was no evidence of temporal variation in allele frequencies within populations. However, ephemeral genetic divergences between sites were detected, along with a significant reduction in genetic diversity at one site, suggesting there may be low effective population sizes (Ne). Our results suggest that localized declines in genetic diversity could be offset by gene flow from other locations within ocean basins, though predicting the broader impacts of localized stock depletions requires further understanding of recruitment dynamics and life history characteristics of the species.
Data from: High intra-ocean, but limited inter-ocean genetic connectivity in populations of the deep-water oblique-banded snapper Pristipomoides zonatus (Pisces: Lutjanidae)
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Fig. 2 in Multiloci analyses suggest synonymy among Rhomboplites, Ocyurus and Lutjanus and reveal the phylogenetic position of Lutjanus alexandrei (Lutjanidae: Perciformes)
Fig. 2. Bayesian inference based on the 3.0 kb dataset of mtDNA (16S, COI, and cyt b) and nuclear (RAG-1) sequences in 40 Lutjanidae species. The dating was based on the estimated minimum age for the oldest fossil reported to the family. The branch mainly discussed in the text is highlighted, revealing the origin of Lutjanus alexandrei between 2.5 – 6.5 Mya.
Fig. 1 in Molecular authentication of Pargo fillets Lutjanus purpureus (Perciformes: Lutjanidae) by DNA barcoding reveals commercial fraud
Fig. 1. Neighbor-joining (NJ) tree constructed from a 600-bp of the COI gene, showing two clades, which indicates the presence of two species among the fillets labeled as "Pargo"; the nucleotide divergence between the species (the value of 8.7%) is indicated above the outermost node. Within parentheses the frequency of each haplotype is described and the replacement rate present in the fillets is shown in plot to the right.
Fig. 1 in Hematological and biochemical characteristics during the transport of dog snapper Lutjanus jocu (Perciformes: Lutjanidae)
Fig. 1. Photomicrographs of a peripheral blood smear of Lutjanus jocu showing a corresponding sequence of images: a. Mature Erythrocyte (ME); b. Immature Erythrocyte (IE); c. Thrombocyte (T); d. Neutrophil (N); e. Lymphocyte (L); and f. Monocyte (M). Scale bars = 10 μm.
FIGURE 4 in Paracaesio brevidentata n. sp., a new snapper (Lutjanidae: Apsilinae) from Indonesia
FIGURE 4. Lateral view of Paracaesio kusakarii, CSIRO H 7219–04, 167 mm SL, east Lombok, Indonesia.
FIGURE 3 in Paracaesio brevidentata n. sp., a new snapper (Lutjanidae: Apsilinae) from Indonesia
FIGURE 3. Lateral view of Paracaesio caerulea, CSIRO H 7219–03, 168 mm SL, east Lombok, Indonesia.
FIGURE 6 in Paracaesio brevidentata n. sp., a new snapper (Lutjanidae: Apsilinae) from Indonesia
FIGURE 6. Lateral view of Paracaesio sordida, CSIRO H 7306–01, 211 mm SL, West Java, Indonesia.
FIGURE 5. K2P in Validity of a blue stripe snapper, Lutjanus octolineatus (Cuvier 1828) and a related species, L. bengalensis (Bloch 1790) with a new species (Pisces; Lutjanidae) from the Arabian Sea
FIGURE 5. K2P distance neighbor-joining tree of the cytochrome c oxidase subunit I (COI) gene (603 bp) of six species of the blue-striped snapper complex and Lutjanus fulvus included as an outgroup from the Indo-West Pacific.
FIGURE 4. Lutjanus sapphirolineatus n in Validity of a blue stripe snapper, Lutjanus octolineatus (Cuvier 1828) and a related species, L. bengalensis (Bloch 1790) with a new species (Pisces; Lutjanidae) from the Arabian Sea
FIGURE 4. Lutjanus sapphirolineatus n. sp.: MUFS 33724, holotype, 153 mm SL, Muttrah, Oman.
Fig. 3 in Morphometric and genetic variations of four dominant species of snappers (Lutjanidae) harvested from the Northern Coast of Aceh waters, Indonesia
Fig. 3. Traditional morphometric characters of snapper measured in this study.
Fig. 2 in Morphometric and genetic variations of four dominant species of snappers (Lutjanidae) harvested from the Northern Coast of Aceh waters, Indonesia
Fig. 2. Four dominant snappers harvested from the northern coast of Aceh.
Table 2 in The mitochondrial genome of the Yellowtail Snapper Ocyurus chrysurus (Bloch, 1791) (Perciformes: Lutjanidae)
<p><b>Table 2.</b> Selective pressure analysis in the protein-coding genes (PCGs) of <i>Ocyurus chrysurus</i>. Ka/Ks values were calculated using the G-MYN model.</p><table><tbody><tr><th>Genes</th><th>Ka</th><th>Ks</th><th>Ka/Ks</th><th><i>p</i> values</th></tr></tbody><tbody><tr><th><i>atp8</i></th><td>0</td><td>0.447011</td><td>0</td><td>NA</td></tr><tr><th><i>atp6</i></th><td>0.008628</td><td>0.643218</td><td>0.013415</td><td>1.92E-38</td></tr><tr><th><i>cox1</i></th><td>0.001807</td><td>0.576714</td><td>0.003133</td><td>1.22E-94</td></tr><tr><th><i>cox2</i></th><td>0</td><td>0.63547</td><td>0</td><td>NA</td></tr><tr><th><i>cox3</i></th><td>0.00169</td><td>0.592519</td><td>0.002852</td><td>NA</td></tr><tr><th><i>nad1</i></th><td>0.001421</td><td>0.887008</td><td>0.001602</td><td>2.80E-75</td></tr><tr><th><i>nad2</i></th><td>0.01025</td><td>0.350753</td><td>0.010875</td><td>4.73E-34</td></tr><tr><th><i>nad3</i></th><td>0.008549</td><td>0.896393</td><td>0.009537</td><td>2.55E-25</td></tr><tr><th><i>nad4</i></th><td>0.008153</td><td>0.425769</td><td>0.01915</td><td>5.00E-57</td></tr><tr><th><i>nad4l</i></th><td>3.35E-12</td><td>0.910699</td><td>0.00</td><td>0</td></tr><tr><th><i>nad5</i></th><td>0.010358</td><td>3.18101</td><td>0.010358</td><td>6.67E-150</td></tr><tr><th><i>nad6</i></th><td>0.00607</td><td>0.370163</td><td>0.008141</td><td>8.27E-19</td></tr><tr><th><i>cob</i></th><td>0.825769</td><td>0.0012</td><td>0.001153</td><td>2.00E-30</td></tr></tbody></table><p>Ka: number of nonsynonymous substitutions per nonsynonymous site; Ks: number of synonymous substitutions per synonymous site; Ka/Ks: ratio based on pairwise comparisons</p>
Table 1 in The mitochondrial genome of the Yellowtail Snapper Ocyurus chrysurus (Bloch, 1791) (Perciformes: Lutjanidae)
<p><b>Table 1.</b> Mitochondrial genome of <i>Ocyurus chrysurus</i>. Arrangement and annotation.</p><table><tbody><tr><th>Name</th><th>Type</th><th>Start</th><th>Stop</th><th>Strand</th><th>Length (bp)</th><th>Start</th><th>Stop</th><th>Anticodon</th><th>Continuity</th></tr></tbody><tbody><tr><th>trnF</th><td>tRNA</td><td>1</td><td>68</td><td>+</td><td>68</td><td></td><td></td><td>GAA</td><td>0</td></tr><tr><th>rrnS</th><td>rRNA</td><td>69</td><td>1020</td><td>+</td><td>952</td><td></td><td></td><td></td><td>0</td></tr><tr><th>trnV</th><td>tRNA</td><td>1021</td><td>1092</td><td>+</td><td>72</td><td></td><td></td><td>TAC</td><td>46</td></tr><tr><th>rrnL</th><td>rRNA</td><td>1139</td><td>2790</td><td>+</td><td>1652</td><td></td><td></td><td></td><td>0</td></tr><tr><th>trnL2</th><td>tRNA</td><td>2791</td><td>2864</td><td>+</td><td>74</td><td></td><td></td><td>TAA</td><td>0</td></tr><tr><th><i>nad1</i></th><td>PCG</td><td>2865</td><td>3839</td><td>+</td><td>975</td><td>ATG</td><td>TAA</td><td></td><td>3</td></tr><tr><th>trnI</th><td>tRNA</td><td>3843</td><td>3912</td><td>+</td><td>70</td><td></td><td></td><td>GAT</td><td>−1</td></tr><tr><th>trnQ</th><td>tRNA</td><td>3912</td><td>3982</td><td>−</td><td>71</td><td></td><td></td><td>TTG</td><td>−1</td></tr><tr><th>trnM</th><td>tRNA</td><td>3982</td><td>4050</td><td>+</td><td>69</td><td></td><td></td><td>CAT</td><td>0</td></tr><tr><th><i>nad2</i></th><td>PCG</td><td>4051</td><td>5097</td><td>+</td><td>1047</td><td>ATG</td><td>TAA</td><td></td><td>−1</td></tr><tr><th>trnW</th><td>tRNA</td><td>5097</td><td>5168</td><td>+</td><td>72</td><td></td><td></td><td>TCA</td><td>0</td></tr><tr><th>trnA</th><td>tRNA</td><td>5169</td><td>5237</td><td>−</td><td>69</td><td></td><td></td><td>TGC</td><td>1</td></tr><tr><th>trnN</th><td>tRNA</td><td>5239</td><td>5311</td><td>−</td><td>73</td><td></td><td></td><td>GTT</td><td>2</td></tr><tr><th>OL</th><td>PCG</td><td>5314</td><td>5352</td><td>+</td><td>39</td><td></td><td></td><td></td><td>−2</td></tr><tr><th>trnC</th><td>tRNA</td><td>5351</td><td>5417</td><td>−</td><td>67</td><td></td><td></td><td>GCA</td><td>0</td></tr><tr><th>trnY</th><td>tRNA</td><td>5418</td><td>5487</td><td>−</td><td>70</td><td></td><td></td><td>GTA</td><td>1</td></tr><tr><th><i>cox1</i></th><td>PCG</td><td>5489</td><td>7039</td><td>+</td><td>1551</td><td>GTG</td><td>TAA</td><td></td><td>2</td></tr><tr><th>trnS2</th><td>tRNA</td><td>7042</td><td>7112</td><td>−</td><td>71</td><td></td><td></td><td>TGA</td><td>3</td></tr><tr><th>trnD</th><td>tRNA</td><td>7116</td><td>7187</td><td>+</td><td>72</td><td></td><td></td><td>GTC</td><td>6</td></tr><tr><th><i>cox2</i></th><td>PCG</td><td>7194</td><td>7886</td><td>+</td><td>693</td><td>ATG</td><td>TAG</td><td></td><td>−2</td></tr><tr><th>trnK</th><td>tRNA</td><td>7885</td><td>7959</td><td>+</td><td>75</td><td></td><td></td><td>TTT</td><td>1</td></tr><tr><th><i>atp8</i></th><td>PCG</td><td>7961</td><td>8128</td><td>+</td><td>168</td><td>ATG</td><td>TAA</td><td></td><td>−10</td></tr><tr><th><i>atp6</i></th><td>PCG</td><td>8119</td><td>8802</td><td>+</td><td>684</td><td>ATG</td><td>TAA</td><td></td><td>−1</td></tr><tr><th><i>cox3</i></th><td>PCG</td><td>8802</td><td>9587</td><td>+</td><td>786</td><td>ATG</td><td>TAA</td><td></td><td>−1</td></tr><tr><th>trnG</th><td>tRNA</td><td>9587</td><td>9658</td><td>+</td><td>72</td><td></td><td></td><td>TCC</td><td>0</td></tr><tr><th><i>nad3</i></th><td>PCG</td><td>9659</td><td>10,009</td><td>+</td><td>351</td><td>ATG</td><td>TAG</td><td></td><td>−2</td></tr><tr><th>trnR</th><td>tRNA</td><td>10,008</td><td>10,076</td><td>+</td><td>69</td><td></td><td></td><td>TCG</td><td>0</td></tr><tr><th><i>nad4l</i></th><td>PCG</td><td>10,077</td><td>10,373</td><td>+</td><td>297</td><td>ATG</td><td>TAA</td><td></td><td>−7</td></tr><tr><th><i>nad4</i></th><td>PCG</td><td>10,367</td><td>11,747</td><td>+</td><td>1381</td><td>ATG</td><td>T</td><td></td><td>0</td></tr><tr><th>trnH</th><td>tRNA</td><td>11,748</td><td>11,816</td><td>+</td><td>69</td><td></td><td></td><td>GTG</td><td>0</td></tr><tr><th>trnS1</th><td>tRNA</td><td>11,817</td><td>11,884</td><td>+</td><td>68</td><td></td><td></td><td>GCT</td><td>4</td></tr><tr><th>trnL1</th><td>tRNA</td><td>11,889</td><td>11,961</td><td>+</td><td>73</td><td></td><td></td><td>TAG</td><td>0</td></tr><tr><th><i>nad5</i></th><td>PCG</td><td>11,962</td><td>13,800</td><td>+</td><td>1839</td><td>ATG</td><td>TAA</td><td></td><td>−4</td></tr><tr><th><i>nad6</i></th><td>PCG</td><td>13,797</td><td>14,318</td><td>−</td><td>522</td><td>ATG</td><td>TAG</td><td></td><td>0</td></tr><tr><th>trnE</th><td>tRNA</td><td>14,319</td><td>14,387</td><td>−</td><td>69</td><td></td><td></td><td>TTC</td><td>6</td></tr><tr><th><i>Cob</i></th><td>PCG</td><td>14,394</td><td>15,534</td><td>+</td><td>1141</td><td>ATG</td><td>T</td><td></td><td>0</td></tr><tr><th>trnT</th><td>tRNA</td><td>15,535</td><td>15,606</td><td>+</td><td>72</td><td></td><td></td><td>TGT</td><td>−1</td></tr><tr><th>trnP</th><td>tRNA</td><td>15,606</td><td>15,675</td><td>−</td><td>70</td><td></td><td></td><td>TGG</td><td>254</td></tr><tr><th>CR</th><td></td><td>15,675</td><td>16,502</td><td>+</td><td>827</td><td></td><td></td><td></td><td>51</td></tr></tbody></table>
Figure 7 in Snappers (Perciformes: Lutjanidae) of West Bengal coast with eight new records and a key for their identification
Figure 7. Pristipomoides multidens (Day, 1871).
Figure 6 in Snappers (Perciformes: Lutjanidae) of West Bengal coast with eight new records and a key for their identification
Figure 6. Pristipomoides filamentosus (Valenciennes, 1830).
FIGURE 3 in Pristipomoides amoenus (Snyder 1911), a valid species of jobfish (Pisces, Lutjanidae), with comparisons to P. argyrogrammicus (Valenciennes 1832)
FIGURE 3. Genetic relationships among six specimens of Pristipomoides argyrogrammicus, four specimens of P. amoenus, two specimens of P. zonatus and one specimen of Aphareus rutilans based on 575 base pair nucleotide sequences of mitochondrial DNA COI region. The phylogenetic tree was estimated by the maximum likelihood method. Numbers with nodes indicate the bootstrap probabilities with 500 replications.
FIGURE 1 in Pristipomoides amoenus (Snyder 1911), a valid species of jobfish (Pisces, Lutjanidae), with comparisons to P. argyrogrammicus (Valenciennes 1832)
FIGURE 1. Holotypes of Pristipomoides argyrogrammicus (A) and Pristipomoides amoenus (B): A. MNHN 0000-7037, 189 mm SL, photographed by C. Ferrara; B. USNM 68231, 203 mm SL, photographed by S. Raredon.
Fig. 4 in Morphometric and genetic variations of four dominant species of snappers (Lutjanidae) harvested from the Northern Coast of Aceh waters, Indonesia
Fig. 4. The scatter plot of Function 1 again Function 2 of traditional morphometric characters for four species of snappers harvested from the northern coast of Aceh.
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