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79 results for “Macroevolution”
Histological dataset for: Osteohistological analyses reveal diverse strategies of theropod dinosaur body-size macroevolution
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Macroevolution of defense syndromes in Ficus (Moraceae)
<p>Recursive adaptations and counter-adaptations of plant-feeding insects are thought to have driven chemical and physical diversity in plant defenses. Among existing theories on defensive diversity, the syndromes hypothesis predicts that plants may evolve suites of covarying defense traits along evolutionary arms races with herbivores. We use the large, phenotypically diverse angiosperm genus Ficus (Moraceae) to test the major predictions of this hypothesis: i) plant species will form distinctive combinations of defensive traits; ii) these traits will be correlated within each syndrome. Trait combinations need not map well onto phylogenies because plant species can converge onto similar trait values, but strong phylogenetic signal driven by selection (as opposed to drift) suggests roles for escalation and co-evolution. Finally, Ficus species with complementary combinations of defenses will be less susceptible to insect damage and harbor distinct insect communities. We quantified susceptibility to insect herbivory and nine leaf traits related to resource acquisition and defense in 36 Ficus species growing in a common-garden setting, in dry and wet seasons over two years. We recovered a set of three syndromes defined by relatively small sets of trait combinations. Broadly speaking, these syndromes grouped fig species with different life forms. For example, epiphytic figs had nutrient-poor, tough, tannin-rich leaves, while free-standing trees tended to have leaves covered in trichomes and full of alkaloid-rich latex. When season and species identity were accounted for, the combination of two traits, higher C/N and higher latex tannin content, provided significantly stronger defense than did either trait taken singly. Several individual traits (C/N, latex tannin and trichome density) were significantly negatively correlated with herbivore damage, while alkaloid content was positively correlated (perhaps as a result of feeding by adapted herbivores). Several defensive traits influenced insect herbivore community structure. Finally, traits followed different evolutionary trajectories. While latex tannin, C/N and leaf tannin fit a Brownian-motion model of evolution, the first two escalating across Ficus phylogeny, others appeared to have more limited phylogenetic signal or tended to de-escalate. Overall, the patterns we detected support the concept of coordinated defense syndromes, demonstrating that evolutionary arms races can drive combinations of traits in this genus.</p>
Macroevolution of flower color patterning: biased transition rates and correlated evolution with flower size
<p>Floral pigmentation patterns can both mediate plant-pollinator interactions and modify the abiotic environment of reproductive structures. To date there have been no inquiries into the rate and directionality of macroevolutionary transitions between patterned and non-patterned petals despite their ecological importance and ubiquity across angiosperms. Petals in the Potentilleae tribe (Rosaceae) display color patterns in the ultraviolet (UV) and human-visible spectrum, or can be uniform in color (i.e., patternless). Using a phylogeny of Potentilleae, I test whether evolutionary transition rates between patterned and non-patterned petals are biased in either direction. I then examine whether UV and human-visible patterns are phylogenetically correlated and test the prediction that color patterns will evolve in concert with larger flowers if they function as guides to orient pollinators to floral rewards. I found that transition rates were biased toward petals that were uniform in color. Transition rates from patterned to uniformly-colored petals were two and six times higher than the reverse for UV and human-visible pattern, respectively. The presence of UV and human-visible pattern evolved independently from one another. However, the evolution of human-visible pattern was associated with the evolution of larger flowers but the evolution of UV pattern was correlated with the evolution of smaller flowers. I posit that the transition bias towards non-patterned flowers may reflect developmental constraints on spatial regulation of pigments required to produce floral color patterning. The correlated evolution of larger flowers and human-visible pigmentation patterns support the hypothesis that nectar or pollen guides are more likely to evolve in larger-flowered species. This work provides insight into how transition rate bias and trait correlations can shape phylogenetic patterns of floral color pattern diversity.</p>
Data from: Mechanisms of macroevolution: polyphagous plasticity in butterfly larvae revealed by RNA-Seq
Transcriptome studies of insect herbivory are still rare, yet studies in model systems have uncovered patterns of transcript regulation that appear to provide insights into how insect herbivores attain polyphagy, such as a general increase in expression breadth and regulation of ribosomal, digestion- and detoxification-related genes. We investigated the potential generality of these emerging patterns, in the Swedish comma, Polygonia c-album, which is a polyphagous, widely-distributed butterfly. Urtica dioica and Ribes uva-crispa are hosts of P. c-album, but Ribes represents a recent evolutionary shift onto a very divergent host. Utilizing the assembled transcriptome for read mapping, we assessed gene expression finding that caterpillar life-history (i.e. 2nd vs. 4th-instar regulation) had a limited influence on gene expression plasticity. In contrast, differential expression in response to host-plant identified genes encoding serine-type endopeptidases, membrane-associated proteins and transporters. Differential regulation of genes involved in nucleic acid binding was also observed suggesting that polyphagy involves large scale transcriptional changes. Additionally, transcripts coding for structural constituents of the cuticle were differentially expressed in caterpillars in response to their diet indicating that the insect cuticle may be a target for plant defence. Our results state that emerging patterns of transcript regulation from model species appear relevant in species when placed in an evolutionary context.
Data from: Ecology and macroevolution – evolutionary niche monopolisation as a mechanisms of niche conservatism
Explaining macroevolution from microevolution is a key issue in contemporary evolutionary theory. A recurrent macroevolutionary pattern is that some niche‐related traits consistently evolve slower than others, so called niche conservatism. Despite a growing amount of data, the underlying evolutionary processes are not fully understood. I here analyse adaptive radiations in an individual‐based eco‐evolutionary model. I find a coevolutionary mechanism – evolutionary niche monopolisation – as a possibly important generator of niche conservatism. A single lineage of a radiating clade can monopolise, and later diversify within, a substantial part of the available niche space – much larger than what can be explained by limiting similarity. This leads to niche conservatism, since no species evolves into or out of the monopolised region. The region can in this sense also be described as an adaptive zone. The model indicates that evolutionary niche monopolisation is operative in a large part of parameter space, underlining its possible importance. The mechanism is driven by competitive interactions and differences in niche widths in alternative niche dimensions. I discuss plausible examples of evolutionary niche monopolisation in well‐studied natural systems.
Data from: Macroecology and macroevolution of the latitudinal diversity gradient in ants
The latitudinal diversity gradient—the tendency for more species to occur toward the equator—is the dominant pattern of life on Earth, yet the mechanisms responsible for it remain largely unexplained. Recently, the analysis of global data has led to advances in understanding, but these advances have been mostly limited to vertebrates and trees and have not provided consensus answers. Here, we synthesize large-scale geographic, phylogenetic, and fossil data for an exemplar invertebrate group—ants—and investigate whether the latitudinal diversity gradient arose due to higher rates of net diversification in the tropics, or due to a longer time period to accumulate diversity due to Earth's climatic history. We find that latitudinal affinity is highly conserved, temperate clades are young and clustered within tropical clades, and diversification rate shows no systematic variation with latitude. These results indicate that diversification time —and not rate— is the main driver of the diversity gradient in ants.
Supplementary data for "Novel isolates expand the physiological diversity of Prochlorococcus and illuminate its macroevolution" by Becker et. al.
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Data from: A modular framework characterizes micro- and macroevolution of Old World monkey dentitions
The study of modularity can provide a foundation for integrating development into studies of phenotypic evolution. The dentition is an ideal phenotype for this as it is developmentally relatively simple, adaptively highly significant, and evolutionarily tractable through the fossil record. Here, we use phenotypic variation in the dentition to test a hypothesis about genetic modularity. Quantitative genetic analysis of size variation in the baboon dentition indicates a genetic modular framework corresponding to tooth type categories. We analyzed covariation within the dentitions of six species of Old World monkeys (OWMs) to assess the macroevolutionary extent of this framework: first by estimating variance–covariance matrices of linear tooth size, and second by performing a geometric morphometric (GM) analysis of tooth row shape. For both size and shape, we observe across OWMs a framework of anterior and postcanine modules, as well as submodularity between the molars and premolars. Our results of modularity by tooth type suggest that adult variation in the OWM dentition is influenced by early developmental processes such as odontogenesis and jaw patterning. This study presents a comparison of genotypic modules to phenotypic modules, which can be used to better understand their action across evolutionary time scales.
Niche partitioning shaped herbivore macroevolution through the early Mesozoic dataset
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Macroevolution of defense syndromes in Ficus (Moraceae)
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Data from: A modular framework characterizes micro- and macroevolution of Old World monkey dentitions
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Data from: Commensal associations and benthic habitats shape macroevolution of the bivalve clade Galeommatoidea
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Data from: Mechanisms of macroevolution: polyphagous plasticity in butterfly larvae revealed by RNA-Seq
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Data from: Predator macroevolution drives trophic cascades and ecosystem functioning
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Data from: Macroecology and macroevolution of the latitudinal diversity gradient in ants
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Data from: Macroevolution of specificity in cyanolichens of the genus Peltigera section Polydactylon (Lecanoromycetes, Ascomycota)
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Data from: Ecology and macroevolution – evolutionary niche monopolisation as a mechanisms of niche conservatism
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Macroevolution of flower color patterning: biased transition rates and correlated evolution with flower size
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Functional roles of Aves class specific cis-regulatory elements on macroevolution of bird-specific features
GEO Series GSE75480. Gallus gallus. 40 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.