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71 results for “Metagenome assembled genome”
Figure 1 in Whole and nearly complete mitochondrial genomes of an endemic and endangered neotropical rabbit (Romerolagus diazi) assembled using non-invasive eDNA metagenomics (field droppings)
Figure 1. Circular DNA mitochondrial genome map of Romerolagus diazi assembled from eDNA (field collected droppings, sample SRR14209493). The annotated map depicts 13 protein-coding genes (PCGs), two ribosomal RNA genes (rrnS: 12S ribosomal RNA and rrnL: 16S ribosomal RNA), 22 transfer RNA (tRNA) genes, and the putative control region (not annotated). Photo credit: J.A. Guerrero.
Metagenome-assembled genomes provide new insight into the microbial diversity of two thermal pools in Kamchatka, Russia
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Metagenome Assembled Genome for Planticonsortium tenu (FRE)
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Deepurify: a multi-modal deep language model to remove contamination from metagenome-assembled genomes
<p>The SIM2 testing set.</p>
Supporting data for the manuscript "Generation of lineage-resolved complete metagenome-assembled genomes in complex microbial communities"
<p>Supporting data for the manuscript titled "Generation of lineage-resolved complete metagenome-assembled genomes in complex microbial communities". The archive includes:</p> <ul> <li>metaFlye assmeblies and graphs for HiFi and CLR datasets.</li> <li>HiFi and CLR3 bins/MAGs produced using bin3C / DAS_Tool</li> <li>HiFi MAG taxonomy identifications and completeness info</li> <li>MAGPhase results on HiFi and CLR assmeblies </li> <li>Krona plots with sample composition analysis</li> <li>rRNA/tRNA annotations for the HiFi assembly</li> </ul>
Deepurify: a multi-modal deep language model to remove contamination from metagenome-assembled genomes
<p>The SIM1 testing set.</p>
Brown 23 et al - Metagenome Assembled Genomes from Activated Sludge Bioreactors
<p>in this folder are the gtdb classifications, checkm output, and a fasta file for each MAG</p>
Data from: Predicted input of uncultured fungal symbionts to a lichen symbiosis from metagenome-assembled genomes
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Metagenome assembled genomes from mouse gut microbiota
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Metagenome-assembled genomes from two genera of pitcher plants and three freshwater lakes
<p>Illumina shotgun metagenome sequences from <em>Sarracenia </em>and <em>Nepenthes </em>pitcher plants (originally published in Bittleston et al. 2018, MG-RAST RRID: SCR_004814; mgp15454) and three freshwater lakes (Consensus Lake, New York, USA (SRR15064816), Lake Mendota, Wisconsin, USA (SRR11647637), and Lake Samiti, Sikkim, India (SRR10757258)) were binned using CONCOCT v1.1.0 (Alneberg et al. 2014). Bins were further refined using anvi’o’s interactive interface v7.1 (Eren et al. 2015).</p>
Metagenome-assembled genomes (MAGs) from Acropora pharaonis holobiont
<p>These metagenome-assembled genomes were assembled from the Acropora pharonis metagenomes. Reads were simultaneously mapped to <em>Acropora</em>, <em>Cladocopium</em> genomes before the reads were individually assembled and binned. The resulting genomes were dereplicated and filtered for contamination and completeness. A high-quality MAG for Endozoicomonas was obtained and used along with paired metabolomic data to investigate the roles Endozoicomonas play in the coral holobiont during thermal stress. </p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.