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763 results for “Mitochondrial DNA”
Fig. 2 in Mitochondrial DNA reveals the impact of Pleistocene glaciations on a widespread palearctic bat species
Fig. 2 Chronograms, resulting from BI analysis of the four selected Hypsugo marker sequences ND1 (a), CytB (b), COI (c), and 16 S RNA (d). Only lineage A and B were detected in all four marker datasets. The dots denote nodes with posterior probability value equal or above 0.95. Other nodes were below the value we designated as reliable to successfully infer phylogenetic relations between detected lineages (0.95). The scale bar indicates approximate age in millions of years
Fig. 3 in Mitochondrial DNA reveals the impact of Pleistocene glaciations on a widespread palearctic bat species
Fig. 3 Median-joining haplotype networks for the four marker sequences ND1 (a), CytB (b), COI (c), and 16 S RNA (d). Smaller coloured circles represent a single sequence, while the larger represent two or three. Hala refers to H. alaschanicus and Hstu to H. stubbei
Fig. 1 in Mitochondrial DNA reveals the impact of Pleistocene glaciations on a widespread palearctic bat species
Fig. 1 (a) Geographic origin of assigned Hyspugo savii sequences. For some sequences, only vague localities were available, and the placement therefore might be unprecise (see Online Resource 1). + marks the type locality of H. savii (Pisa, Italy). Projected lineage occurrence areas (coloured polygons) were created using buffer zones of approximately 200 km around each data point following anecdotal citations of migration distance (Juste and Paunović 2016; Dietz and Kiefer 2016) in QGIS v. 3.4.14. Question marks denote areas, where lineage distribution is at present unknown. (b) A H. savii individual photographed near Dragonja River, SW Slovenia, in 2018 by Jan Gojznikar. (c) MCC tree obtained by using the concatenated dataset. Posterior probabilities are shown next to their respective nodes. Value of the scale bar refers to million years before present. Squared tips indicate a concatenated sequence of a single individual, whilst triangles denote multiple concatenated sequences
Fig 1 in Evolutionary relationships of Macaca fascicularis fascicularis (Raffles 1821) (Primates: Cercopithecidae) from Singapore revealed by Bayesian analysis of mitochondrial DNA sequences
Fig 1. Map of Southeast Asia showing the approximate location of the new (Singapore and Bali) and GenBank sequences included in the study. Numbers correspond to the following locations (haplotype IDs in parentheses): ★, Singapore (Sing1–3); 1, Vietnam (Viet1 & 2); 2, Cambodia (Camb1 & 2); 3, Thailand (Thai1); 4, Thailand (Thai2); 5, Malaysia (Selangor1 & 2); 6, Malaysia (Johor); 7, south Sumatra, Indonesia (Sumatra1 & 2, Java1); 8, Java (Java1); 9, Kalimantan, Borneo (Borneo3); 10, Sarawak, Borneo (Borneo1); 11, Sepilok, Borneo (Borneo2); 12, Bali, Indonesia (Bali1 & 2); 13, Sibuyan, Philippines (Phil1); 14, Bangkok, Thailand (Thai3 & 4); 15, Malaysia (W. Malay); 16, Malaysia (E. Malay2); 17 Malaysia (E. Malay1);18, north Sumatra (Sumatra3–6, 9); 19, west Borneo, Indonesia (Borneo9); 20, west Borneo, Indonesia (Borneo4–7); 21, central Borneo, Indonesia (Borneo4 & 6); 22, Bangka, south Sumatra (Sumatra 7 & 8); 23, Java, Indonesia (Java2 & 3); 24, northeast Borneo, Indonesia (Borneo8); 25, Mindanao, Philippines (Phil2); 26, Timor (Timor). Several Borneo haplotypes appear in multiple locations.
Fig 4. Median-joining haplotype network for M in Evolutionary relationships of Macaca fascicularis fascicularis (Raffles 1821) (Primates: Cercopithecidae) from Singapore revealed by Bayesian analysis of mitochondrial DNA sequences
Fig 4. Median-joining haplotype network for M. fascicularis. The size of the circular nodes representing haplotypes is proportional to the number of sequences comprising the haplotype. Shading of circular nodes corresponds to general geographic groupings including Sundaic islands (white), mainland Indochina (gray), Malay Peninsula and northern Sumatra (dark gray), and Singapore (black). Haplotype identifications are presented in Table 1.
Fig 3 in Evolutionary relationships of Macaca fascicularis fascicularis (Raffles 1821) (Primates: Cercopithecidae) from Singapore revealed by Bayesian analysis of mitochondrial DNA sequences
Fig 3. Phylogenetic tree topology from Bayesian inference of 12S/tRNA-val/16S mtDNA sequences using a Birth-Death speciation tree prior, and HYK+G+I nucleotide substitution model in BEAST v2.1.3. Lettered identifications for clades are presented below the branches at major nodes. Posterior probabilities are displayed above the branches at nodes. Numbers in parentheses appearing with haplotype identifications are presented in Table 1, and correspond to numbered locations presented on the Figure 1 map. The Singapore haplotypes form two phylogenetic subgroupings, one from the Bukit Timah Nature Reserve (Sing1) and the other from the Central Catchment Nature Reserve (Sing2 & Sing3).
Fig 2 in Evolutionary relationships of Macaca fascicularis fascicularis (Raffles 1821) (Primates: Cercopithecidae) from Singapore revealed by Bayesian analysis of mitochondrial DNA sequences
Fig 2. Map of central Singapore showing the sampling locations in the Bukit Timah (BTNR) and Central Catchment (CCNR) Nature Reserves. Map created using ArcGIS® (ESRI® 2015).
Fig 1 in Is repeated cypermethrin fumigation dangerous for the mitochondrial DNA in dry insect samples?
Fig 1. Chemical structure of cypermethrin (C22H19Cl2NO3) which is the active insecticidal substance (6.25%) in commercial available smoke shells "Cytrol Super SG" (PelGar s.r.o./Agrochema družstvo Studenec, Czech Republic).
Fig 3 in Is repeated cypermethrin fumigation dangerous for the mitochondrial DNA in dry insect samples?
Fig 3. Quality of PCR products of all 128 samples used in this study (barcoding region of the cytochrome oxidase I) checked on the 1% agarose gel in the horizontal electrophoresis. A1–D1 – run I. A1 – Oxythyrea funesta (fumigated samples), B1 – O. funesta (negative control), C1 – Supella longipalpa (fumigated samples), D1 – S. longipalpa (negative control). A2–D2 – run II (same legend as in run I). L = DNA ladder, N = negative control for PCR, P = positive control for PCR. Numbers of samples are abbreviation of musem IDs (NMPC-GAS-00XX, XX = numbers used in this figure). Red number = weak or not working sample.
Fig. 5 in Phylogenetic relationships of the bumblebees Bombus moderatus, B. albocinctus, B. burjaeticus, B. florilegus and B. cryptarum based on mitochondrial DNA markers: a complex of closely related taxa with circumpolar distribution (Hymenoptera: Apidae: Bombus))
Fig. 5: Tree topology calculated as Maximum-Likelihood tree using Bayesian MCMC analysis with the general time reversal model of base substitution and gamma distribution for degraded DNA of museum specimens, only parsimony informative triplets included.
Fig. 4 in Phylogenetic relationships of the bumblebees Bombus moderatus, B. albocinctus, B. burjaeticus, B. florilegus and B. cryptarum based on mitochondrial DNA markers: a complex of closely related taxa with circumpolar distribution (Hymenoptera: Apidae: Bombus))
Fig. 4: Observed diagnostic character changes with position numbers mapped onto the Maximum- Likelihood tree. Black box = unambiguous diagnostic charactercharacter change, grey box = ambiguous diagnostic charactercharacter change, and white box = character change.
Fig. 3 in Phylogenetic relationships of the bumblebees Bombus moderatus, B. albocinctus, B. burjaeticus, B. florilegus and B. cryptarum based on mitochondrial DNA markers: a complex of closely related taxa with circumpolar distribution (Hymenoptera: Apidae: Bombus))
Fig. 3: Alignment of all parsimonious informative triplets (with uninformative sites deleted -), and with a pointer for position number (numbered for total COI) and codon position. Diagnostic (= private) positions marked with colour green = Thymine, violet = Cytosine, red = Adenine and yellow = Guanine.
Fig. 2 in Phylogenetic relationships of the bumblebees Bombus moderatus, B. albocinctus, B. burjaeticus, B. florilegus and B. cryptarum based on mitochondrial DNA markers: a complex of closely related taxa with circumpolar distribution (Hymenoptera: Apidae: Bombus))
Fig. 2: Tree topology calculated as Maximum-Likelihood tree using Bayesian MCMC analysis with the general time reversal model of base substitutions with gamma distribution.
Fig. 1 in Molecular Systematics of Mouse Opossums (Didelphidae: Marmosa): Assessing Species Limits using Mitochondrial DNA Sequences, with Comments on Phylogenetic Relationships and Biogeography
Fig. 1. Provenance of sequenced specimens of Marmosa (localities of sequenced outgroup specimens are not shown). Numbers refer to entries in the Gazetteer (appendix).
Fig. 3 in Molecular Systematics of Mouse Opossums (Didelphidae: Marmosa): Assessing Species Limits using Mitochondrial DNA Sequences, with Comments on Phylogenetic Relationships and Biogeography
Fig. 3. The maximum-likelihood tree inferred from the best-fit model of nucleotide substitution (table 4). ML bootstrap support values and Bayesian posterior probabilities are indicated above and below branches, respectively. Branch and terminal labels follow the same conventions explained in the caption to figure 2.
Fig. 2 in Molecular Systematics of Mouse Opossums (Didelphidae: Marmosa): Assessing Species Limits using Mitochondrial DNA Sequences, with Comments on Phylogenetic Relationships and Biogeography
Fig. 2. Strict consensus of 96 equally most-parsimonious trees (L 5 2198; CI 5 0.36; RI 5 0.80). Bootstrap support values are indicated above branches subtending species and conspecific haplogroups discussed in the text. For each terminal, country of origin, next-largest political unit (state, department, province, etc.), and an alphanumeric specimen identifier (from table 2) are provided. Numbers in parentheses refer to localities mapped in figure 1 and listed in the Gazetteer (appendix).
Figure 4 in Mitochondrial DNA variation and the evolutionary history of the Mediterranean species of Cicada L. (Hemiptera, Cicadoidea)
Figure 4. Minimum spanning network for Cicada in the Mediterranean area, based on 12S rRNA gene haplotypes (HCo, C. orni haplogroup; HCm, C. mordoganensis haplogroup; HCc, C. cretensis haplogroup; HCl, C. lodosi and HCb, C. barbara haplogroup). The size of the circles representing each haplotype is proportional to the number of specimens showing that particular haplotype; colours are representative of the locality.
Figure 3 in Mitochondrial DNA variation and the evolutionary history of the Mediterranean species of Cicada L. (Hemiptera, Cicadoidea)
Figure 3. Frequencies of transitions and transversions over K81 sequence divergences obtained among Cicada specimens for (A) the total length of 12S rRNA sequences, (B) loop regions based on the secondary structure of the 12S rRNA gene sequences and (C) stem regions based on the secondary structure of the 12S rRNA gene.
Figure 1 in Mitochondrial DNA variation and the evolutionary history of the Mediterranean species of Cicada L. (Hemiptera, Cicadoidea)
Figure 1. Collection sites of the Cicada specimens analysed in the Mediterranean region: inserts are given for Portugal and Greece, where most sites were sampled.
Figure 1 in Mitochondrial DNA diversity and taxa delineation in the land snails of the Iberus gualtieranus (Pulmonata, Helicidae) complex
Figure 1. Images of the three morphotypes of the Iberus gualtieranus complex. A, Iberus gualtieranus, with a keeled, flattened shell and closed umbilicus. B, Iberus alonensis, with a globose and non-umbilicated shell. C, Iberus campesinus, with a rounded, umbilicated shell and an expanded peristome. Scale bar: 2 cm.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.