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Dataset results
81 results for “Monomer”
Learning the cis sequence elements that determine AP-1 monomer specificity
GEO Series GSE111856. Mus musculus. 51 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other.
Learning the cis sequence elements that determine AP-1 monomer specificity (ChIP-seq data sets)
GEO Series GSE111854. Mus musculus. 34 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Photoreceptor-induced LHL4 protects the photosystem II monomer in Chlamydomonas reinhardtii
GEO Series GSE255943. Chlamydomonas reinhardtii. 24 samples. Type: Expression profiling by high throughput sequencing.
Differences in the free energies between the excited states of Abeta40 and Abeta42 monomers encode their aggregation propensities.
<p>The trajectory files (in dcd format) generated for the Abeta40 and Abeta42 monomer sequences using the SOP-IDP model. The data accompanies the publication "Differences in the free energies between the excited states of Abeta40 and Abeta42 monomers encode their aggregation propensities" (doi: https://doi.org/10.1101/2020.02.09.940676) by Debayan Chakraborty, John E. Straub and D. Thirumalai. The scripts for hierarchical clustering, and analysis of ensemble-averaged properties, described in the manuscript are also available. </p>
Amyloid-beta 16-22 peptide monomer simulation (without salt) with the CHARMM-Drude force field and OpenMM (Run 3)
<p>Amyloid-beta 16-22 peptide (monomer) simulations with the CHARMM-Drude force field and OpenMM. Initial structures are obtained from CHARMM-GUI. This is the third independent simulation runs out of three. The system does not contain any ions.</p> <p>Total trajectory length is 1 microseconds. Frame saving frequency is 10 ps.</p> <p>All the simulation parameters and force field files are uploaded into this repository. Simulations are done with OpenMM v. 7.5.1.</p> <p> </p>
Amyloid-beta 16-22 peptide monomer simulation (150 mM NaCl) with the CHARMM36m force field and Gromacs (Run 2)
<p>MD simulations of the Amyloid-beta 16-22 monomer at 150 mM NaCl concentration with CHARMM36m force field and Gromacs. This repository contains the first out of three independent runs. </p> <p>Files belong to the publication "<a href="https://doi.org/10.1021/acs.jcim.0c01063">https://doi.org/10.1021/acs.jcim.0c01063</a>"</p> <p>All the simulation parameters and force field files are uploaded into this repository. Simulations are done with Gromacs 2018.3</p> <p>Total simulation time is 500 ns. Frames are saved with 100 ps frequency. </p>
Amyloid-beta 16-22 peptide monomer simulation (150 mM NaCl) with the CHARMM36m force field and Gromacs (Run 1)
<p>MD simulations of the Amyloid-beta 16-22 monomer at 150 mM NaCl concentration with CHARMM36m force field and Gromacs. This repository contains the first out of three independent runs. </p> <p>Files belong to the publication "<a href="https://doi.org/10.1021/acs.jcim.0c01063">https://doi.org/10.1021/acs.jcim.0c01063</a>"</p> <p>All the simulation parameters and force field files are uploaded into this repository. Simulations are done with Gromacs 2018.3</p> <p>Total simulation time is 500 ns. Frames are saved with 100 ps frequency. </p>
Curated monomers for Virtual Forward Synthesis (VFS)
<p>This data set (named "monomers.pkl") of molecules was used to generate the hypothetical polymers stored in https://github.com/Ramprasad-Group/polyverse-structures. This data set is derived from the union of the ZINC15 and ChEMBL databases. The data set was created using the following rules: (1) select the molecules that are readily purchasable (2) select the molecules that have standard reactivity (3) strip counterions and chirality (4) Use the SAscore to remove complex molecules.</p> <p>The data set contains 7,754,881 entries. It contains two columns: "index" and "id-smiles". Each entry in "index" is an integer, starting from 0. Each entry in "id-smiles" is a tuple. The first element of the tuple is an ID (either the ZINC15 ID or the ChEMBL ID). The second element of the tuple is the processed SMILES string.</p>
Fibrin Monomer Compared With Hemostatic Sponge in the Integrity of the Graft During Tympanoplasty
ClinicalTrials.gov study NCT02120651. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Evaluation of the Release of Monomers From Composite Bonding Resins in Orthodontics
ClinicalTrials.gov study NCT04459013. IPD Sharing: NO. Countries: 1. Publications: 0.
Learning the cis sequence elements that determine AP-1 monomer specificity (RNA-seq data sets)
GEO Series GSE111855. Mus musculus. 17 samples. Type: Expression profiling by high throughput sequencing; Other.
Modulation of apple leaf trancriptome by tomato cutin monomer extract
GEO Series GSE245564. Malus domestica. 6 samples. Type: Expression profiling by high throughput sequencing.
Conserved Gsx2/Ind homeodomain monomer versus homodimer DNA binding defines regulatory outcomes in the fly and mouse
GEO Series GSE162589. Mus musculus. 4 samples. Type: Other.
Genomic Redistribution of GR Monomers and Dimers Mediates the Transcriptional Response to Exogenous Glucocorticoid In Vivo.
GEO Series GSE68160. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Pro-BMP9 and sENG monomer:BMP9 complex signalling in human pulmonary arterial endothelial cells after 1.5 hours treatment
GEO Series GSE119206. Homo sapiens. 12 samples. Type: Expression profiling by array.
Simulations of a beta-2 adrenergic receptor monomer on a flat membrane
<p>A B2AR monomer in a bilayer, two replicas</p>
Weakly hydrated anions bind to polymers but not monomers in aqueous solutions - Source data for Figure 2
<p>Source data that was used to create Figure 2. </p>
Global transcriptional changes in the JJN3 myeloma cell line that occur as a result of treatment with 2 pyrrolobenzodiazepine (PBD) monomers
GEO Series GSE125395. Homo sapiens. 9 samples. Type: Expression profiling by high throughput sequencing.
Ginsenoside Rd monomer alleviates ulcerative colitis by regulating miRNAs and target genes in macrophages
GEO Series GSE231990. Mus musculus. 9 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Molecular dynamics simulation data of rat phenylalanine hydroxylase (rPAH) monomer
<p>Raw data of molecular dynamics simulations of rat phenylalanine hydroxylase (T22-K450) monomer. Missing residues were rebuilt using Modeller. Metal site was parameterized using MCPB.py in AmberTools. Simulation starts from the crystal pose (PDB: 5DEN).</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.