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19,487 results for “Populations”
Mollusc population abundance monitoring: Fall 2017 mid-marsh and creekbank infaunal and epifaunal mollusc abundance based on collections from GCE marsh, monitoring sites 1-10
This data set is the Fall 2017 estimate of infaunal and epifaunal mollusc abundance at the GCE-LTER marsh sites used for population monitoring. Species abundance was determined by hand-collecting all the infaunal and epifaunal molluscs from within quadrats of known area in mid-marsh and creekbank zones (n = 4 quadrats per zone) at all sites. The molluscs were returned to the lab, fixed in ethanol, transferred to and preserved in ethanol, counted and measured (size data is reported separately). The counts were converted to number per square meter. Gastropod species are listed first, followed by bivalve species. Size distribution data for these collections may be found in the GCE-LTER data set INV-GCEM-1807a.
Fall 2017 crab population monitoring: mid-marsh and creek bank abundance based on crab hole counts at GCE marsh, monitoring sites 1-10
This data set is the Fall 2017 estimate of crab densities at the GCE-LTER marsh sites used for population monitoring. Crab abundance was determined by counting the number of crab holes within a 625 cm^2 quadrat and converting the counts to number per square meter. Counts were made in the mid-marsh and creek bank zones (n = 4 per zone) at GCE sites 1 through 10. Note that this census method does not differentiate which species made a particular hole and therefore only estimates total burrowing crab abundance, potentially including species Uca pugnax, Uca minax, Uca pugilator, Armases cinereum, Eurytium limosum and Sesarma reticulatum. Crab holes that are not actively maintained are quickly covered by tidal activity and other sediment disturbances, therefore plugged holes were assumed to be unoccupied and excluded from the counts.
Fall 2018 crab population monitoring: mid-marsh and creek bank abundance based on crab hole counts at GCE marsh, monitoring sites 1-10
This data set is the Fall 2018 estimate of crab densities at the GCE-LTER marsh sites used for population monitoring. Crab abundance was determined by counting the number of crab holes within a 625 cm^2 quadrat and converting the counts to number per square meter. Counts were made in the mid-marsh and creek bank zones (n = 4 per zone) at GCE sites 1 through 10. Note that this census method does not differentiate which species made a particular hole and therefore only estimates total burrowing crab abundance, potentially including species Uca pugnax, Uca minax, Uca pugilator, Armases cinereum, Eurytium limosum and Sesarma reticulatum. Crab holes that are not actively maintained are quickly covered by tidal activity and other sediment disturbances, therefore plugged holes were assumed to be unoccupied and excluded from the counts.
Mollusc population abundance monitoring: Fall 2018 mid-marsh and creekbank infaunal and epifaunal mollusc abundance based on collections from GCE marsh, monitoring sites 1-10
This data set is the Fall 2018 estimate of infaunal and epifaunal mollusc abundance at the GCE-LTER marsh sites used for population monitoring. Species abundance was determined by hand-collecting all the infaunal and epifaunal molluscs from within quadrats of known area in mid-marsh and creekbank zones (n = 4 quadrats per zone) at all sites. The molluscs were returned to the lab, fixed in ethanol, transferred to and preserved in ethanol, counted and measured (size data is reported separately). The counts were converted to number per square meter. Gastropod species are listed first, followed by bivalve species. Size distribution data for these collections may be found in the GCE-LTER data set INV-GCEM-1907a.
Mollusc population size distribution monitoring: Fall 2018 mid-marsh and creekbank infaunal and epifaunal mollusc size distributions based on collections from GCE marsh monitoring sites 1-10
This data set is the Fall 2018 report of infaunal and epifaunal mollusc species size distributions at the GCE-LTER marsh sites used for population monitoring. Infaunal and epifaunal molluscs were hand-collected from within quadrats of known area from mid-marsh and creekbank zones (n = 4 quadrats per zone) at all sites. The molluscs were returned to the lab, preserved in ethanol, measured and counted (count data is reported separately). Length of each measurable individual was determined using calipers or an ocular micrometer mounted in a stereomicroscope. Species abundance and density data for these collections may be found in the GCE-LTER data set INV-GCEM-1907. Numbers of individuals of each species in the abundance data file may not correspond exactly to the numbers of individuals in the size data file because some individuals may not have been measureable.
Fall 2019 crab population monitoring: mid-marsh and creek bank abundance based on crab hole counts at GCE marsh, monitoring sites 1-10
This data set is the Fall 2019 estimate of crab densities at the GCE-LTER marsh sites used for population monitoring. Crab abundance was determined by counting the number of crab holes within a 625 cm^2 quadrat and converting the counts to number per square meter. Counts were made in the mid-marsh and creek bank zones (n = 4 per zone) at GCE sites 1 through 10. Note that this census method does not differentiate which species made a particular hole and therefore only estimates total burrowing crab abundance, potentially including species Uca pugnax, Uca minax, Uca pugilator, Armases cinereum, Eurytium limosum and Sesarma reticulatum. Crab holes that are not actively maintained are quickly covered by tidal activity and other sediment disturbances, therefore plugged holes were assumed to be unoccupied and excluded from the counts.
Mollusc population abundance monitoring: Fall 2019 mid-marsh and creekbank infaunal and epifaunal mollusc abundance based on collections from GCE marsh, monitoring sites 1-10
This data set is the Fall 2019 estimate of infaunal and epifaunal mollusc abundance at the GCE-LTER marsh sites used for population monitoring. Species abundance was determined by hand-collecting all the infaunal and epifaunal molluscs from within quadrats of known area in mid-marsh and creekbank zones (n = 4 quadrats per zone) at all sites. The molluscs were returned to the lab, fixed in ethanol, transferred to and preserved in ethanol, counted and measured (size data is reported separately). The counts were converted to number per square meter. Gastropod species are listed first, followed by bivalve species. Size distribution data for these collections may be found in the GCE-LTER data set INV-GCEM-2007a.
Mollusc population size distribution monitoring: Fall 2019 mid-marsh and creekbank infaunal and epifaunal mollusc size distributions based on collections from GCE marsh monitoring sites 1-10
This data set is the Fall 2019 report of infaunal and epifaunal mollusc species size distributions at the GCE-LTER marsh sites used for population monitoring. Infaunal and epifaunal molluscs were hand-collected from within quadrats of known area from mid-marsh and creekbank zones (n = 4 quadrats per zone) at all sites. The molluscs were returned to the lab, preserved in ethanol, measured and counted (count data is reported separately). Length of each measurable individual was determined using calipers or an ocular micrometer mounted in a stereomicroscope. Species abundance and density data for these collections may be found in the GCE-LTER data set INV-GCEM-2007. Numbers of individuals of each species in the abundance data file may not correspond exactly to the numbers of individuals in the size data file because some individuals may not have been measureable.
Ant populations and Pest suppression at the Kellogg Biological Station, Hickory Corners, MI (2018)
Dataset Abstract Data supporting the paper Helms IV, J. A., S. E. Ijelu, B. D. Wills, D. A. Landis, and N. M. Haddad. 2020. Ant biodiversity and ecosystem services in bioenergy landscapes. Agriculture, Ecosystems and Environment 290:106780 https://doi.org/10.1016/j.agee.2019.106780 The data tables document mortality of pest insect eggs in vertebrate exclosures, as well as ant species and the number of ant workers captured in pitfall traps, during the 2018 growing season in LTER forest plots, the Biofuel Cropping System Experiment (BCSE) plots, and the GLBRC Scale-up Experiment. original data source http://lter.kbs.msu.edu/datasets/188
MCR LTER: Coral Reef: Population Dynamics: Symbiodinium population initial sampling conditions in corals of Moorea
These data consist of sample collection locations and conditions only, not the results of sequencing. These data were an initial collection of an expected time series which was not repeated. Clade data derived from the sample collection described here are archived on GeoSymbio. Coral are symbiotic with photosynthetic dinoflagellates from the genus Symbiodinium. There are eight divergent clades (A-H) within the genus which each contain many genetic varieties. Different types of Symbiodinium have been shown to affect the growth rate and thermal tolerance of the coral. The diversity and population structure of Symbiodinium on a reef and how it changes over time is therefore critical to the stability and resilience of coral reefs. Our research conducted through the MCR LTER project aims at defining the population structure of Symbiodinium present in the corals of Moorea and documenting changes over time. This material is based upon work supported by the U.S. National Science Foundation under Grant No. OCE 16-37396 (and earlier awards) as well as a generous gift from the Gordon and Betty Moore Foundation. Research was completed under permits issued by the French Polynesian Government (Délégation à la Recherche) and the Haut-commissariat de la République en Polynésie Francaise (DTRT) (Protocole d'Accueil 2005-2022). This work represents a contribution of the Moorea Coral Reef (MCR) LTER Site.
MCR LTER: Coral Reef: Long-term Population Dynamics of Acanthaster planci, ongoing since 2005
These data describe the abundance of Acanthaster planci, Crown of Thorns Sea stars, surveyed as part of MCR LTER's annual reef fish monitoring program. This study began in 2005 and the dataset is updated annually. The abundances of A. planci observed on a five-by-fifty meter transect are recorded by a diver using SCUBA. Surveys are conducted between 0900 and 1600 hours (Moorea time) during late July or early August each year. Four replicate transects are surveyed in each of three habitats (forereef, backreef, and fringing reef) at six locations, two on each of Moorea's three sides, on the forereef, six locations on the backreef (two on each of Moorea's three sides for a total of 72 individual transects. Transects are permanently marked using a series of small, stainless steel posts affixed to the reef. Transects on the forereef are located at a depth of approximately 12m, those on the backreef are located at a depth of approximately 1.5m and those on the fringing reef are located at a depth of approximately 10m. This monitoring program is consistent with the protocols adopted by the Global Coral Reef Monitoring Network and the Australian Institute of Marine Science for use with the Great Barrier Reef Long-term Monitoring Program. This material uses data collected by the U.S. National Science Foundation's (NSF) Moorea Coral Reef Long Term Ecological Research (MCR LTER) site under Grant No. OCE 2224354 (and earlier awards). Additional financial support to the MCR LTER site was provided through a generous gift from the Gordon and Betty Moore Foundation. Research was completed under permits issued by the French Polynesian Government (Délégation à la Recherche) and the Haut-commissariat de la République en Polynésie Francaise (DTRT) (Protocole d'Accueil 2005-2024). These data from the years 2005-2010 were published in: Adam, T.C., R.J. Schmitt, S.J. Holbrook, A.J. Brooks, P.J. Edmunds, R.C. Carpenter and G. Bernardi. 2011. Herbivory, connectivity, and ecosystem resilienc
MCR LTER: Coral Reef: Long-term Population and Community Dynamics: Corals, ongoing since 2005
This dataset contains the percentage cover of the stony corals (Scleractinia) and other major groups analyzed from 0.5 x 0.5 m photographic quadrats in several reef habitats at the Moorea Coral Reef LTER, French Polynesia. This survey has been repeated annually in April since 2005. There are two tables available, providing different views of the same data: a long table having all values in one column and a wide table having a separate column for each dependent variable. Functional groups (i.e., dependent variables) counted are: Scleractinian Corals (by genus where appropriate, see methods), Macroalgae, Crustose Coralline Algae / Bare Space, Soft Corals, Hydrocorals (Millepora), Algal Turf, and Sand. The coral community was sampled photographically in all habitats surrounding the island: Fringing Reef, Lagoon (Backreef), and Outer Reef (Forereef.) The sampling regime consists of a repeated-measures protocol in each habitat and is structured by habitat to allow a statistical contrast of sites, shores, times, and in the case of the outer reef, depths. Detailed methods are available in the protocols section.
MCR LTER: Coral Reef: Long-term Population and Community Dynamics: Fishes, ongoing since 2005
These data describe the estimated species abundances and individual sizes of fishes surveyed in late July or early August of each year by researchers associated with the Moorea Coral Reef Long Term Ecological Research site. This study began in 2005, and the dataset is updated annually. Divers using SCUBA estimate the number and total length (total body length to the greatest precision possible) of all mobile and semi-cryptic fishes observed on four 50m long transects within each of the three principal habitat types, fore reef, back reef, and fringing reef, found around Moorea. These three habitats are each surveyed at six permanently marked sites, two sites on each of Moorea's three shores, yielding a total of 18 unique habitats (3) by location (6) combinations and 72 transects. Estimated total lengths are converted to estimates of species biomass using published length-weight relationships for each species. Data from the initial survey conducted in 2005 are presented in a separate data table as the protocol used in 2005 differed from the standard protocol adopted in 2006, and no estimates of fish body lengths were made in 2005. These data are a component of the MCR LTER core time series program and provide insight into the spatial and temporal patterns of reef fish abundance and biomass around the island of Moorea, French Polynesia.
MCR LTER: Coral Reef: Long-term Population and Community Dynamics: Other Benthic Invertebrates, ongoing since 2005
The data presented here are the abundances of the major invertebrate herbivores and corallivores on Moorea coral reefs. Abundances are estimated in 4 fixed quadrats along 5 permanent transects at each of 4 habitats at 2 sites on each of the 3 shores of Moorea each year. Counts are made in one-meter-squared quadrats.
MCR LTER: Coral Reef: Long-term Population and Community Dynamics: Benthic Algae and Other Community Components, ongoing since 2005
Coral reefs are comprised of scleractinian corals and many other benthic organims. The sampling described here quantifies the relative abundances of corals (aggregate abundance) and the other major benthic components including algal turfs, macroalgae, crustose corallines, and other sessile invertebrates. Abundance is estimated yearly at each of 6 sites (2 per shore) around the island. At each site, and in each of 4 habitats (fringing reef, backreef, forereef 10-m depth, forereef 17-m depth), 5 permanent 10-m long transects have been established and abundance estimates are made at fixed positions along each transect (n=10, 0.25 m2 quadrats per transect) allowing a repeated measures statistical analysis for the detection of temporal trends.
Dragonfly and Damselfly populations on Nantucket Island
<p>Report and data submitted in fulfillment of a 2012 Nantucket Biodiversity Initiative grant.</p> <p>The first comprehensive survey of Odonates (dragonflies and damselflies) on Nantucket Island occurred in 1917. Four species were added to this list by 1930. In 2012, we surveyed several ponds bi-weekly for adults and larval skins to update the species list and provide records of relative abundance. We found six species of dragonflies that have colonized the island since 1930 and added two species to the island list that are migratory or irruptive. The damselflies are more complicated because of difficult or questionable identification, but there are certainly five species new to the Nantucket list and two species that have likely been extirpated since 1930.</p> <p>Files:</p> <p>allSurveyData.csv - survey for adults<br> Blyth-and-LoPresti-2013.pdf - the report itself<br> comparativeSpeciesList.csv - comparing this study data to past studies<br> dataDictionary.csv<br> keyedExuviae.csv - exuviae collected at ponds</p>
Arctic falcons population monitoring data
<p>The Arctic Falcon Specialist Group (AFSG) is an informal network of biologists with a research focus on Arctic-breeding peregrine falcons (<em>Falco peregrinus</em>) and gyrfalcons (<em>Falco rusticolus)</em>. AFSG was established to enhance the coordination and collaboration on the monitoring of the two Arctic falcon species and the initial joint effort was to compile the first overview of Arctic falcon monitoring sites, present trends for long-term occupancy and productivity, and summarize information describing abundance, distribution, phenology and health of the two species – based on data for 24 falcon monitoring sites across the Arctic. The analyses were published in the journal Ambio (Franke et al. 2020) as a contribution to the terrestrial Circumpolar Biodiversity Monitoring Programme (CBMP) defined by Arctic Council’s Biodiversity Working Group (Christensen et al. 2018).</p> <p>The data compiled from across the Arctic for the analyses by Franke et al. (2020) are here made available for wider usage and comparisons. However, for the analyses in the Ambio paper, some filtering procedures were applied (e.g. time series shorter than 10 sampling years, or fewer than 10 territories monitored), excluding some of the original data that are now made available in this dataset. In addition, some co-authors preferred either to conduct separate uploads of respective data, or declined the invitation to make the data publicly available (see attached map overview of monitoring sites); hence this dataset does not exactly match the data analysed by Franke et al. (2020).</p> <p>This data set contains the annual estimates of peregrine and gyrfalcon ‘occupancy’ and ‘productivity’ in respective monitoring sites; for definitions as well a discussion of challenges in determining, interpreting and comparing those figures across sites with different sampling procedures please consult Franke et al. (2020 and 2017).</p> <p>The file named <strong>Arctic falcons monitoring data - AFSG 2020.csv</strong> contains the annual estimates of occupancy and productivity for peregrine falcon and gyrfalcon along with information on monitoring sites and the principal investigators as specified in the file <strong>ReadMe_Arctic-falcons-monitoring-data.txt</strong>. <strong>Arctic falcons monitoring data - AFSG 2020.xlsx</strong> contains the same data in Microsoft Excel format.</p> <p>The file named <strong>AFSG-MonitoringSites-with-data.png</strong> provides an overview of the 24 monitoring sites described in Franke et al. (2020) with indication of which datasets are included here.</p> <p>Please note that:</p> <ul> <li>The dataset contains information on sample size (number of nesting territories surveyed in each monitoring site and year) for some areas only; for areas without sample size more than 10 territories were usually surveyed. However, for interpreting the data, potential users may need to consult the principal investigators for the specific monitoring sites.</li> <li>The dataset lists the principal investigators (and contact details) as respective “data owners”; in addition to the Creative Commons License 4.0 specifications covering this data upload, potential data users are strongly encouraged to contact the data owners prior to using or interpreting the data – for consent and possible co-authorship.</li> </ul>
Data from: Spatial and host-related variation in prevalence and population density of wheat curl mite (Aceria tosichella) cryptic genotypes in agricultural landscapes
<p><strong>Filename: coord.csv</strong></p> <p>Names of the sampling locations and their geographic coordinates.</p> <ol> <li>Name - sampling locality identifier</li> <li>Lat - latitude</li> <li>Long - longitude</li> </ol> <p> </p> <p><strong>Filename: lineages.csv</strong></p> <ol> <li>id.sample - sample identifier</li> <li>host - host species (Arrela=<em>Arrhenantherum elatius</em>, Avesat=<em>Avena sativa</em>, Broine=<em>Bromus inermis</em>, Elyres=<em>Elymus repens</em>, Horvul=<em>Hordeum vulgaris</em>, Seccer=<em>Secale cereale</em>, Triaes=<em>Triticum aestivum</em>, Tririm=<em>Triticale rimpaui</em></li> <li>x, y - geodetic coordinates</li> <li>stems - no. of stems in a sample</li> <li>leaves - no. of leaves in a sample</li> <li>MT.01 to MT.27 - no. of mites belonging to each genetic lineage</li> </ol>
Genomic vcf file for D.melanogaster, Sussex LHM population
<p>Data, logs and code for genomic vcf genotypes file for the Morrow lab, D.melanogaster LHM sequencing and genotyping project.</p>
Population genomics of Sussex LHM Drosophila melanogaster
<p>Input data, code, output data, summary plots, and run logs for investigation of the population genetics of the Drosophila melanogaster Sussex LHM sample.</p> <p>For output graphs, see popgen_plots.png</p> <p>Input data are 'plink binary' format.</p> <p>Code is a unix/linux shell script containing commands for Plink to perform population genetic tests.</p> <p>The two R scripts contain i. a short command for making a subpopulation file, ii. commands for plotting the output data. Both are initated in the shell script.</p> <p>Platform and version information are available in the log files. Other information available in the shell and R scripts.</p> <p>Broad observations are that the allele frequency disibribution is normal except a few humps around MAF 0.2-0.3 in the autosomes.</p> <p>Linkage disequilbrium, on average, levels-out after ~200bp but there can still be some at distances of 300Kb.</p> <p>The population appears to be divided into four genetically distinct groups (on the IBD-PCA scatter plot), with Fst analysis indicating that this is caused by genetic variation around the centromeres. This is possibly caused by historic admixture, and low centromeric recombination.</p>
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
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OpenNeuro
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