Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
637
datasets available to search
ShareScore release 0.7.1
Dataset results
637 results for “Pristimantis”
Aligned DNA sequence matrix for phylogenetic analyses in the article "Dos nuevas especies del grupo Pristimantis boulengeri (Anura: Strabomantidae) de la cuenca alta del río Napo, Ecuador" by Bejarano, et al.
<p>Matrix in nexus format that include sequences of 16S (1-1295), RAG1 (1296-1922), 12S (1923-3306), and COI (3307-3984) for 97 specimens belonging to the genus <em>Pristimantis</em>, in addition to specimens of <em>Strabomantis</em> and <em>Niceforonia</em> as outgroups.</p>
Six new species of Pristimantis (Anura: Strabomantidae) from Llanganates National Park and Sangay National Park in Amazonian cloud forests of Ecuador
<p><strong>Fig. S1. Phylogenetic relationships of <em>Pristimantis</em> species showing <em>Pristimantis anaiae</em> sp. nov., <em>Pristimantis glendae</em> sp. nov., <em>Pristimantis kunam</em> sp. nov., <em>Pristimantis resistencia</em> sp. nov., <em>Pristimantis venegasi</em> sp. nov. and <em>Pristimantis tamia</em> sp. nov relations.</strong></p> <p>Maximum likelihood tree obtained for genes 16S, 12S, RAG1 and ND1. Support values are on the corresponding branches: aLRT values above the slash and bootstrap below. The phylogeny was derived from an analysis of 4155 bp for of mitochondrial (gene fragments 12S and 16S) and nuclear (gene fragments RAG1) DNA sequences for 235 terminals. For each specimen, museum number or, in unavailable, GenBank accession number is shown, as well as its locality. Outgroup is not shown. Abbreviations: CCS = confirmed candidate species, UCS = unconfirmed candidate species, ECU = Ecuador.</p> <p> </p> <p><strong>Figure S3. Phylogenetic relationships, based on mitochondrial genes only, showing <em>Pristimantis </em>new species relations.</strong> </p> <p>Maximum likelihood tree obtained for mitochondrial genes 12S, 16S and ND1. Support values are on the corresponding branches: aLRT values above the slash and bootstrap below. The phylogeny was derived from an analysis of 3573 bp for 235 samples of mitochondrial genes DNA sequences. For each specimen, museum number or, in unavailable, GenBank accession number is shown, as well as its locality. Outgroup is not shown. Abbreviations: CCS = confirmed candidate species, UCS = unconfirmed candidate species, ECU = Ecuador. In red, the inconsistencies found.</p>
Aligned DNA sequence matrix for phylogenetic analyses in the article "Systematics of Huicundomantis, a new subgenus of Pristimantis (Anura, Strabomantidae) with extraordinary cryptic diversity and eleven new species"
<p>Aligned DNA sequence matrix for phylogenetic analyses of the article "Systematics of Huicundomantis, a new subgenus of Pristimantis (Anura, Strabomantidae) with extraordinary cryptic diversity and eleven new species"</p> <p>The matrix is in NEXUS format. Genes are arranged as follows:</p> <p>16S RNA, tRNA-Leu = 1–1408<br> ND1 codon position 1 = 1409–2369\3;<br> ND1 codon position 2 = 1410–2367\3;<br> ND1 codon position 3 = 1411–2368\3;<br> tRNA-Ile, tRNA-Gln, rRNA-Met = 2370–2544; <br> RAG1 codon position 3 = 2545–3199\3;<br> RAG1 codon position 1 = 2546–3197\3<br> RAG1 codon position 2 = 2547–3198\3;</p>
Bayesian consensus phylogram from the article "Systematics of Huicundomantis, a new subgenus of Pristimantis (Anura, Strabomantidae) with extraordinary cryptic diversity and eleven new species"
<p>Bayesian consensus phylogram depicting relationships within <em>Pristimantis</em> (<em>Huicundomantis</em>). Museum catalog numbers are shown before the species name. Posterior probabilities resulting from Bayesian Markov chain Monte Carlo searches appear next to the branches.</p>
Fig. 4 in Predatory behaviors: Pristimantis savagei (Anura: Craugastoridae) as prey of Trechalea sp. spiders (Araneae: Trechaleidae) in a sector of the Piedemonte Llanero, Villavicencio, Colombia
Fig. 4. Trechalea sp. individual secreting its digestive juices.
Aligned DNA sequence matrix for phylogenetic analyses in the article "Our unknown neighbor: a new species of rain frog of the genus Pristimantis (Amphibia: Anura: Strabomantidae) from the city of Loja, southern Ecuador"
<p>The aligned matrix is in fasta format. Genes are arranged as follows:</p> <p>12S = 1–909</p> <p>16S = 910–1787</p> <p>RAG-1 = 1788–2399</p>
A new cryptic species of terrestrial breeding frog of the Pristimantis danae Group (Anura: Strabomantidae) from montane forests in Ayacucho, Peru.
<p>File 1: Genetic distances rRNA 16S (p-uncorrected genetic distances) in Mega11. Excel file. For a description of a new species (<em>Pristimantis similaris</em>) in the publication Herrera-Alva et al. 2023.</p> <p>File 2: Alignment of four concatenated genes 16S rRNA, COI, RAG1, and TYR. Fasta file. For a description of a new species (<em>Pristimantis similaris</em>) in the publication Herrera-Alva et al. 2023.</p>
Relaciones fiologenéticas del subgénero Hypodictyon (Anura: Strabomantidae: Pristimantis) con la descripción de Tres nuevas especies de la región del Chocó
<p>El documento, que es parte del material suplementario del artículo, corresponde a la tabla de datos de los tejidos obtenidos de los especímenes del museo del QCAZ que fueron utilizados para obtener la filogenia del estudio.</p>
FIGURE 6 in Two new species of Pristimantis (Anura: Craugastoridae) with notes on the distribution of the genus in northeastern Colombia
FIGURE 6. Illustration of the morphological characteristics of palmar surface, the foot and the head (lateral and dorsal view): A. Pristimantis ardilae sp. nov. B. Pristimantis bowara sp. nov. Scale bar = 5 mm.
Systematics of Pristimantis lacrimosus group (Anura, Strabomantidae) with the description of a new species from the eastern slopes of the Ecuadorian Andes
<p>The data matrix has up to 4021 BP and 116 terminals from the group of species <em>Pristimantis lacrimosus</em> and closely related species.</p> <p>RAG1 position 1 = 1 - 628\3;</p> <p>RAG1 position 2 = 2 - 629\3;</p> <p>RAG1 position 3 = 3 - 630\3;</p> <p>12S = 631-1436;</p> <p>16S = 1437-3115;</p> <p>ND1 position 1 = 3116 - 4019\3;</p> <p>ND1 position 2 = 3117 - 4020\3;</p> <p>ND1 position 3 = 3118 - 4021\3;</p>
Aligned DNA sequence matrix for phylogenetic analyses in the article "Fifty years after: a taxonomic revision of the amphibian species from the Ecuadorian biodiversity hotspot Abra de Zamora, with description of two new Pristimantis species"
<p>The aligned matrices are in fasta format. Genes are arranged as follows:</p> <p>Subgenus Huicundomantis (Huicundomantis.fas):</p> <p>12S = 1–905</p> <p>16S = 906–1820</p> <p>RAG-1 = 1821–2463</p> <p> </p> <p>Genus Lynchius (Lynchius.fas):</p> <p>12S = 1–1028</p> <p>16S = 1029–2313</p> <p>RAG-1 = 2314–2925</p> <p> </p> <p>Pristimantis orestes group (Pristimantis_orestes.fas):</p> <p>12S = 1–964</p> <p>16S = 965–2041</p> <p>RAG-1 = 2042–2683</p>
Supplementary material 1 from: Acosta-Galvis AR, Saldarriaga-Gómez AM, Ramírez B, Vargas-Ramírez M (2020) A new Terrarana frog of genus Pristimantis from an unexplored cloud forest from the eastern Andes, Colombia. ZooKeys 961: 129-156. https://doi.org/10.3897/zookeys.961.51971
Additional specimens examined. IAvH-Am: Alexander von Humboldt Biological Resources Research Institute, Villa de Leyva, Colombia; MPUJ: Lorenzo Uribe Museum of Natural History, Pontificia Universidad Javeriana, Bogotá D.C., Colombia
FIGURE 5 in Out of the blue: A new rain frog species of the genus Pristimantis (Anura Craugastoridae) from the northern Cordillera Central in Colombia
FIGURE 5. Map showing the type locality of Pristimantis zorro sp. nov. and relatives. Pristimantis zorro sp. nov. (green dot) Antioquia, Colombia; P. pulchridormientes (blue dot) Huánuco, Perú; P. pluvialis (red dot) Cusco, Perú; Pristimantis olivaceus (CORBIDI 17473, orange dot) Cusco, Perú and Pristimantis sp (ROM 43978, purple dot) Potaro-Siparuni, Guyana.
FIGURE 4 in Out of the blue: A new rain frog species of the genus Pristimantis (Anura Craugastoridae) from the northern Cordillera Central in Colombia
FIGURE 4. Advertisement call of Pristimantis zorro sp. nov. (MHUA-A 8813, holotype). (A). Spectrogram; (B) Oscillogram; (C) Power spectrum. Photo by JMD.
FIGURE 1 in Out of the blue: A new rain frog species of the genus Pristimantis (Anura Craugastoridae) from the northern Cordillera Central in Colombia
FIGURE 1. (A) Maximum likelihood tree (-lnL=104073.3) depicting evolutionary relationships within Pristimantis inferred from a partitioned analysis using 4103 sites, four genomic regions, and 188 terminals. The complete tree is provided as appendix 1. (B) Uncorrected genetic distances between species most closely related to Pristimantis zorro sp. nov. Genetic distance given in percentage and based on 529 aligned sites of 16S. Colored terminals match colors in Figure 5 (Map).
FIGURE 6 in Out of the blue: A new rain frog species of the genus Pristimantis (Anura Craugastoridae) from the northern Cordillera Central in Colombia
FIGURE 6. Adult males of Pristimantis zorro sp. nov. and related species: (A) Pristimantis zorro sp. nov, paratype (MHUAA12093); (B) Pristimantis olivaceus ZFMK 67132, SVL 19.7 mm, paratype; (C) Pristimantis pluvialis CORBIDI 11862, SVL 20.5 mm, paratype; (D) Pristimantis pulchridormientes CORBIDI 15565, adult male. Photos: (A) MRC; (B) Jörn Köhler; (C) Alessandro Catenazzi; (D) Germán Chávez.
FIGURE 3 in Out of the blue: A new rain frog species of the genus Pristimantis (Anura Craugastoridae) from the northern Cordillera Central in Colombia
FIGURE 3. Paratype of Pristimantis zorro sp. nov. in preservative. MHUA-A 11165, SVL 20.1 mm, adult male. Photos by MRC.
FIGURE 2 in Out of the blue: A new rain frog species of the genus Pristimantis (Anura Craugastoridae) from the northern Cordillera Central in Colombia
FIGURE 2. Adult males of Pristimantis zorro sp. nov. in life: (A) MHUA-A 8813, SVL 20.1 mm, holotype; (B) MHUA-A 8814, SVL 20.5 mm, paratype; (C) MHUA-A 8815, SVL 20.3 mm, paratype, adult male; (D) MHUA-A 8816, SVL 19.5 mm, paratype; (E) MHUA-A 8817, SVL 21.5 mm, paratype; (F) MHUA-A 11165, SVL 20.1 mm, paratype; (G) MHUA-A 11166, SVL 21.3 mm, paratype; (H) MHUA-A 11167, SVL 20.8 mm, paratype. Photos by Adriana Restrepo, Carlos Marín and JMD.
Data from: A new tuberculated Pristimantis (Anura, Terrarana, Strabomantidae) from the Venezuelan Andes, redescription of Pristimantis pleurostriatus, and variation within Pristimantis vanadisae
A new tuberculated Pristimantis is described from the eastern versant of the Venezuelan Andes. The new species is found in cloud forest at around 1600 masl on the eastern side of the Cordillera de Mérida. It is distinguished from other similar tuberculated species by its round, ill-defined canthus rostralis, ill-defined canthal stripe, and absence of pale spots on the groin and posterior surface of thighs. Pristimantis pleurostriatus is a poorly known species found in cloud forest on the western slopes of the Venezuelan Andes. We redescribe the species based on topotypic specimens. Pristimantis vanadisae is a polychomatic species varying dramatically in pattern; four chromotypes are described. Molecular data are presented which distinguish among tuberculated and other species of Pristimantis in the Cordillera de Merida. Molecular data also support placement of Mucubatrachus and Paramophrynella in Pristimantis.
Data from: Elevational and microclimatic drivers of thermal tolerance in Andean Pristimantis frogs
Aim: We analysed elevational and microclimatic drivers of thermal tolerance diversity in a tropical mountain frog clade to test three macrophysiological predictions: less spatial variation in upper than lower thermal limits (Bretts' heat invariant hypothesis); narrower thermal tolerance ranges in habitats with less variation in temperature (Janzen´s climatic variability hypothesis); and higher level of heat impacts at lower altitudes. Location: Forest and open habitats through a 4230 m elevational gradient across the tropical Andes of Ecuador. Method: We examined variability in critical thermal limits (CTmax, and CTmin), and thermal breadth (CTmax-CTmin) in 21 species of Pristimantis frogs. Additionally, we monitored maximum and minimum temperatures at the local-scale (tmax, tmin), and estimated vulnerability to acute thermal stress from heat (CTmax-tmax) and cold (tmin – CTmin), by partitioning thermal diversity into elevational and microclimatic variation. Results: Our results were consistent with Brett's hypothesis: altitude promotes more variation in CTmin and tmin than in CTmax and tmax. Frogs inhabiting thermally variable open habitats have higher CTmax and tmax and greater thermal breadths than species restricted to forest habitats, which show less climatic overlap across the elevational gradient (Janzen´s hypothesis). Vulnerability to heat stress was higher in open than forest habitats and did not vary with altitude. Main conclusions: We suggest a mechanistic explanation of thermal tolerance diversity in elevational gradients by including microclimatic thermal variation. We propose that the unfeasibility to buffer minimum temperatures locally may explain the rapid increase in cold tolerance (lower CTmin) with elevation. In contrast, the relative invariability in heat tolerance (CTmax) with elevation may revolve around the organisms' habitat selection of open and canopy buffered habitats. Secondly, on the basis of microclimatic estimates, lowland and upland species may be equally vulnerable to temperature increase, which is contrary to the pattern inferred from regional interpolated climate estimators.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.