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97
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ShareScore release 0.9.0
Dataset results
97 results for “Quantitative trait loci”
Mapping of Hepatic Expression Quantitative Trait Loci (eQTLs) in a Han Chinese Population [Expression analysis]
GEO Series GSE53791. Homo sapiens. 64 samples. Type: Expression profiling by array.
Quantitative trait loci mapped for TCF21 binding, chromatin accessibility and chromosomal looping in coronary artery smooth muscle cells reveal molecular mechanisms of coronary disease loci (ChIP-Seq)
GEO Series GSE141751. Homo sapiens. 1 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Expression quantitative trait loci of primary melanocytes facilitate identification of melanoma susceptibility genes
GEO Series GSE101771. Homo sapiens. 124 samples. Type: SNP genotyping by SNP array.
Quantitative trait loci mapped for TCF21 binding, chromatin accessibility and chromosomal looping in coronary artery smooth muscle cells reveal molecular mechanisms of coronary disease loci [array]
GEO Series GSE150403. Homo sapiens. 15 samples. Type: SNP genotyping by SNP array; Genome variation profiling by SNP array.
Quantitative trait loci mapping and transcriptome analysis reveal candidate genes regulating the response to ozone in Arabidopsis thaliana
GEO Series GSE61542. Arabidopsis thaliana. 24 samples. Type: Expression profiling by high throughput sequencing.
Porcine intramuscular fat content and composition are regulated by quantitative trait loci with muscle-specific effects
GEO Series GSE25708. Sus scrofa. 19 samples. Type: Expression profiling by array.
Quantitative trait loci mapped for TCF21 binding, chromatin accessibility and chromosomal looping in coronary artery smooth muscle cells reveal molecular mechanisms of coronary disease loci
GEO Series GSE141752. Homo sapiens. 18 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other; SNP genotyping by SNP array; Genome variation profiling by SNP array.
Genetic identification, replication, and functional fine-mapping of expression quantitative trait loci in primary human liver tissue [Illumina SNP array]
GEO Series GSE26105. Homo sapiens. 224 samples. Type: Genome variation profiling by SNP array; SNP genotyping by SNP array.
Enrichment of inflammatory bowel disease and colorectal cancer risk variants in colon expression quantitative trait loci
GEO Series GSE56789. Homo sapiens. 40 samples. Type: Expression profiling by array.
Quantitative trait loci mapped for TCF21 binding, chromatin accessibility and chromosomal looping in coronary artery smooth muscle cells reveal molecular mechanisms of coronary disease loci (ATAC-Seq)
GEO Series GSE141748. Homo sapiens. 1 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Characterization of expression quantitative trait loci in extensively phenotyped pedigrees from Colombia and Costa Rica
GEO Series GSE82042. Homo sapiens. 786 samples. Type: Expression profiling by array.
The contribution of RNA decay quantitative trait loci to inter-individual variation in steady-state gene expression levels
GEO Series GSE37451. Homo sapiens. 350 samples. Type: Expression profiling by array.
Quantitative trait loci (QTL) study identifies novel genomic regions associated to Chiari-Like Malformation in Griffon Bruxellois dogs
GEO Series GSE52221. Canis lupus familiaris. 80 samples. Type: Genome variation profiling by SNP array; SNP genotyping by SNP array.
Identification of expression quantitative trait loci (eQTL) in human liver
GEO Series GSE32504. Homo sapiens. 149 samples. Type: Expression profiling by array.
Genome-wide identification of expression quantitative trait loci (eQTLs) in human heart: gene expression
GEO Series GSE55231. Homo sapiens. 129 samples. Type: Expression profiling by array.
Expression quantitative trait loci (eQTL) analysis of mouse lung tumors
GEO Series GSE71232. Mus musculus. 143 samples. Type: Expression profiling by array.
Mapping quantitative trait loci and developing their KASP markers for Pre-harvest Sprouting resistance of Henan wheat varieties in China
GEO Series GSE222342. Triticum aestivum. 27 samples. Type: Expression profiling by high throughput sequencing.
Determinants of gastric cancer immune escape identified from non-coding immune-landscape quantitative trait loci
GEO Series GSE261709. Homo sapiens. 7 samples. Type: Other.
Data from: Lineage-specific mapping of quantitative trait loci
We present an approach for quantitative trait locus (QTL) mapping, termed "lineage-specific QTL mapping", for inferring allelic changes of QTL evolution along branches in a phylogeny. We describe and analyze the simplest case: by adding a third taxon into the normal procedure of QTL mapping between pairs of taxa, such inferences can be made along lineages to a presumed common ancestor. While comparisons of QTL maps among species can identify homology of QTLs by apparent co-location, lineage specific mapping of QTL can classify homology into (1) orthology (shared origin of QTL) versus (2) paralogy (independent origin of QTL within resolution of map distance). In this light, we present a graphical method that identifies six modes of QTL evolution in a three taxon comparison. We then apply our model to map lineage-specific QTLs for inbreeding among three taxa of yellow monkeyflower: Mimulus guttatus and two inbreeders M. platycalyx and M. micranthus, but critically assuming outcrossing was the ancestral state. The two most common modes of homology across traits were orthologous (shared ancestry of mutation for QTL alleles). The outbreeder M. guttatus had the fewest lineage- specific QTL, in accordance with the presumed ancestry of outbreeding. Extensions of lineage-specific QTL mapping to other types of data and crosses, and to inference of ancestral QTL state, are discussed.
Data from: Genetic mapping of three quantitative trait loci for soybean aphid resistance in PI 567324
Host-plant resistance is an effective method for controlling soybean aphid (Aphis glycines Matsumura), the most damaging insect pest of soybean (Glycine max (L.) Merr.) in North America. Recently, resistant soybean lines have been discovered and at least four aphid resistance genes (Rag1, Rag2, Rag3 and rag4) have been mapped on different soybean chromosomes. However, the evolution of new soybean aphid biotypes capable of defeating host-plant resistance conferred by most single genes demonstrates the need for finding germplasm with multigenic resistance to the aphid. This study was conducted to map quantitative trait loci (QTL) for aphid resistance in PI 567324. We identified two major QTL (QTL_13_1 and QTL_13_2) for aphid resistance on soybean chromosome 13 using 184 recombinant inbred lines from a 'Wyandot' × PI 567324 cross. QTL_13_1 was located close to the previously reported Rag2 gene locus, and QTL_13_2 was close to the rag4 locus. A minor QTL (QTL_6_1) was also detected on chromosome 6, where no gene for soybean aphid resistance has been reported so far. These results indicate that PI 567324 possesses oligogenic resistance to the soybean aphid. The molecular markers closely linked to the QTL reported here will be useful for development of cultivars with oligogenic resistance that are expected to provide broader and more durable resistance against soybean aphids compared with cultivars with monogenic resistance.
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OpenNeuro
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