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235 results for “Redundancy”
FIGURE 1. Redundancy Analysis biplot ordination diagram, obtain from a in The recognition of infraspecific taxa in Juniperus brevifolia (Cupressaceae)
FIGURE 1. Redundancy Analysis biplot ordination diagram, obtain from a matrix of 12 populations and 17 morphological variables (not all variables are shown) (Abbreviations: see Table 1) (adapted from Elias 2007).
On the redundancy of the Josephin domain (JD) containing proteins and implications on the spinocerebellar ataxia type 3 (SCA3)
<p>Docking of the PPI reported in Figure 2, 3A, 3B, 4, 5, and 6 of the manuscript ‘On the redundancy of the Josephin domain (JD) containing proteins and implications on the spinocerebellar ataxia type 3 (SCA3).’</p>
Supplement: Functional strain redundancy and persistent phage infection in a Swiss hard cheese starter culture
<p>Undefined starter cultures are bacterial communities used in cheese making. They are phenotypically stable and propagated under constant conditions in milk. This makes them interesting to understand the eco-evolutionary dynamics of microbial communities. While cheese starter cultures are known to be dominated by a few bacterial species, little is known about the composition, functional relevance, and temporal dynamics of strain-level diversity. Here, we applied shotgun metagenomics to analyze historical samples spanning 22 years and continuous propagation for 123 generations of an important Swiss cheese starter culture. We found that the bacterial community is highly stable and dominated by two species, Streptococcus thermophilus and Lactobacillus delbrueckii subsp. lactis. Each species is represented by a few coexisting strains. Genome sequencing, metabolomics analysis, and co-culturing experiments show that these strains are functionally redundant, but differ tremendously in their phage resistance potential. Moreover, we identified two highly abundant Streptococcus phages that seem to stably coexist in the community without any negative impact on bacterial growth or strain persistence, and despite the presence of a large diversity of matching CRISPR spacers. Our findings provide novel insights into strain-level diversity in domesticated microbial communities and highlight an important role of bacteria-phage interactions in cheese starter cultures. </p>
CYCLOIDEA paralogs function redundantly to specify dorsal flower development in Mimulus lewisii (Phrymaceae)
<p><strong>Premise</strong>: Duplicated genes (paralogs) are abundant in plant genomes and their retention may influence the function of genetic programs and contribute to evolutionary novelty. How gene duplication affects genetic modules, and the forces that contribute to paralog retention are outstanding questions. The CYCLOIDEA(CYC)-dependent flower symmetry program is a model for understanding the evolution of gene duplication, providing multiple examples of paralog partitioning and novelty. However, a novel CYC gene lineage duplication event near the origin of Higher Core Lamiales (HCL) has received little attention.</p> <p><strong>Methods</strong>: To understand the evolutionary fate of duplicated HCL CYC2 genes, we determined the effects on flower symmetry of suppressing MlCYC2A and MlCYC2B expression using RNA interference (RNAi). We determined flower symmetry phenotypic effects in single and double silenced backgrounds and coupled this with expression surveys of MlCYC2A, MlCYC2B, and a putative downstream RADIALIS (MlRAD5) ortholog.</p> <p><strong>Key</strong> <strong>results</strong>: MlCYC2A and MlCYC2B jointly contribute to bilateral flower symmetry. MlCYC2B exhibits a clear dorsal flower identity function and may additionally function in carpel development. MlCYC2A functions in establishing dorsal petal shape. Further, our results suggest an MlCYC2A–MlCYC2B regulatory interaction which may affect pathway homeostasis.</p> <p><strong>Conclusions</strong>: Our results suggest that Higher Core Lamiales-specific CYC paralogs may be selectively retained for their joint contribution to bilateral flower symmetry, similar to the independently-derived CYC paralogs in the Lamiales model for bilateral flower symmetry research, <em>Antirrhinum</em> <em>majus</em> (snapdragon).</p>
Functional redundancy in natural pico-phytoplankton communities depends on temperature and biogeography
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Phenotype data for: Pleiotropic and non-redundant effects of an auxin importer in Setaria and maize
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Data from: Impact of ecological redundancy on the performance of machine learning classifiers in vegetation mapping
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Data from: On the benefits of being redundant: low compositional fidelity of diatom death assemblages does not hamper the preservation of environmental gradients in shallow lakes
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Data from: Variation in seed dispersal effectiveness: the redundancy of consequences in diversified tropical frugivore assemblages
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Data from: Land use alters trophic redundancy and resource flow through stream food webs
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Functional diversity and redundancy of tropical forest mammals over time
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Data from: Mouse fitness measures reveal incomplete functional redundancy of Hox paralogous group 1 proteins
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Data from: Massive structural redundancies in species composition patterns of floodplain forest moths
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Data from: Functional diversity and redundancy of tropical forests shift with elevation and forest-use intensity
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Data from: Switching between apparently redundant iron-uptake mechanisms benefits bacteria in changeable environments
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Data from: Donald’s ideotype and growth redundancy: a pot experimental test using an old and a modern spring wheat cultivar
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Data from: Persistence of the effect of frugivore identity on post-dispersal seed fate: consequences for the assessment of functional redundancy
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Data from: Double mutualism: Dual rewards or redundancy? Insights from the interactions between mistletoes and their avian partners in the tropical hotspot of Southwest China
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Data from: Species richness and redundancy promote persistence of exploited mutualisms in yeast
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CYCLOIDEA paralogs function redundantly to specify dorsal flower development in Mimulus lewisii (Phrymaceae)
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.