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106 results for “Salmon River”
Data from: Genetic composition of the Warm Springs River Chinook Salmon population maintained following eight generations of hatchery production
Balancing the disparate objectives of fishery augmentation and conservation of an endemic population presents a substantial challenge. In the case of Warm Springs National Fish Hatchery (Warm Springs Hatchery), strategies for achieving both objectives included incorporation of natural fish into the hatchery broodstock and restricting proportions of hatchery fish on the spawning grounds. The hatchery has been more successful in implementing the latter, however, than the former. We analyzed seventy-six SNP markers in Spring Chinook Salmon O. tshawytscha collected from the Warm Springs River in 1976 – 1977 (prior to hatchery produciton) and 2001-2011 (post-hatchery) to examine whether the genetic characteristics of the endemic population had changed during that time. Pre- and post- hatchery collections clustered together when compared to Round Butte Hatchery (a nearby segregated program) and other Columbia River populations. The difference between pre- and post- hatchery collections was non-significant (AMOVA), but post hatchery samples exhibited significantly lower He. We observed some evidence of reduced effective size (Ne) and increased genetic drift in fish produced at Warm Springs Hatchery (relative to natural-origin fish), and even stronger evidence in fish produced at Round Butte Hatchery. We conclude that natural-origin fish returning to the Warm Springs River form a distinct group within the Interior Columbia Basin Spring-run lineage and have changed very little over the past eight generations. We further speculate that differences between hatchery- and natural- origin fish at Warm Springs Hatchery are expected to increase if hatchery operations remain static (little integration of natural-origin fish and incorporation of Round Butte Hatchery fish in broodstock).
Escapement and ASL data of salmon in the Chena River, Alaska
<p> This data was collected as part of the AKSSF funding #52011 awarded to the Alaska Department of Fish and Game, Sportfish division in Region III. Chinook salmon are an important subsistence resource throughout the Yukon River drainage and the Chena River supports one of the largest spawning populations in the Alaska portion. This project will estimate Chinook and chum salmon by visually counting fish as they pass over a continuous band of white fabric panels strung across the river bottom on the upstream side of the Moose Creek Dam. A DIDSON sonar unit and an ARIS sonar unit will be deployed upstream of the tower site on both sides of the river to ensonify the river at all times and record the number of migrating salmon throughout the run. A mixture model will be used to estimate Chinook and chum salmon during extended periods of high water when tower counts cannot be completed. In addition to enumeration, carcasses of spawned-out Chinook and chum salmon will be collected during the last week of July through the first two weeks of August to estimate the ASL composition of the escapement. The citation for the operational plan for this project is below: </p> <p>Matter, A. N., and M. Tyers. 2019. Chinook salmon escapement in the Chena and Salcha Rivers and Coho salmon escapement in the Delta Clearwater River, 2019-2023. Alaska Department of Fish and Game, Regional Operational Plan ROP.SF.3F.2019.03, Anchorage.</p>
Data from: The origins of Atlantic salmon (Salmo salar L.) re-colonizing the River Mersey in northwest England
By the 1950s, pollution had extirpated Atlantic salmon in the river Mersey in northwest England. During the 1970s, an extensive restoration program began and in 2001, an adult salmon was caught ascending the river. Subsequently, a fish trap was installed and additional adults are now routinely sampled. In this study, we have genotyped 138 adults and one juvenile salmon at 14 microsatellite loci from across this time period (2001–2011). We have used assignment analysis with a recently compiled pan-European microsatellite baseline to identify their most probable region of origin. Fish entering the Mersey appear to originate from multiple sources, with the greatest proportion (45–60%, dependent on methodology) assigning to rivers in the geographical region just north of the Mersey, which includes Northwest England and the Solway Firth. Substantial numbers also appear to originate from rivers in western Scotland, and from rivers in Wales and Southwest England; nonetheless, the number of fish originating from proximal rivers to the west of the Mersey was lower than expected. Our results suggest that the majority of salmon sampled in the Mersey are straying in a southerly direction, in accordance with the predominantly clockwise gyre present in the eastern Irish Sea. Our findings highlight the complementary roles of improving water quality and in-river navigability in restoring salmon to a river and underlines further the potential benefits of restoration over stocking as a long-term solution to declining fish stocks.
Seasonal dynamics of juvenile coho salmon (Oncorhynchus kisutch) in wetlands of the North Thompson River, British Columbia
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Data from: Accuracy of assignment of Atlantic salmon (Salmo salar L.) to rivers and regions in Scotland and northeast England based on single nucleotide polymorphism (SNP) markers.
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Data from: Population structure of sea-type and lake-type sockeye salmon and kokanee in the Fraser River and Columbia River drainages
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Data from: Present-day genetic structure of Atlantic salmon (Salmo salar) in Icelandic rivers and ice-cap retreat models
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Data from: Comparison of SNPs and microsatellites for fine-scale application of genetic stock identification of Chinook salmon in the Columbia River Basin
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Naknek River subsistence salmon harvest assessment
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Data from: The origins of Atlantic salmon (Salmo salar L.) re-colonizing the River Mersey in northwest England
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Data from: Self-sustaining populations, population sinks or aggregates of strays: chum (Oncorhynchus keta) and Chinook salmon (O. tshawytscha) in the Wood River system, Alaska
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Data from: Thermal exposure of adult Chinook salmon and steelhead: diverse behavioral strategies in a large and warming river system
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Data from: Persistent reproductive isolation between sympatric lineages of fall Chinook salmon in White Salmon River, Washington
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A large wild salmon stock shows genetic and life history differentiation within, but not between, rivers
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Data from: Human-mediated evolution in a threatened species? Juvenile life-history changes in Snake River salmon
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Data from: Genetic composition of the Warm Springs River Chinook Salmon population maintained following eight generations of hatchery production
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Data from: Development of 54 novel SNP assays for sockeye and coho salmon and assessment of available SNPs to differentiate stocks within the Columbia River
Single nucleotide polymorphisms (SNPs) have potential for broad application in population and conservation genetics, but availability of these markers are limited in many non-model species. In this study, genomic and expressed sequence tagged (EST) sequences from closely related salmonids (Chinook salmon, and rainbow trout) were used to design primers for amplification and sequencing of sockeye (Oncorhynchus nerka) and coho (O. kisutch) salmon DNA for SNP discovery. One-hundred and six primer sets were designed and tested for amplification in each species. An ascertainment panel of 32 diverse individuals from each species was used as template for PCR amplification and Sanger sequencing. In total 21,647 bases of consensus sequence were screened in sockeye salmon and 20,784 bases in coho salmon with 93 and 149 SNP sites identified, respectively. Sixty four SNP sites were chosen for assay development and 54 of the assays were validated by comparison of genotype and sequence data (O. nerka = 23; O. kisutch = 31). These validated SNP assays along with 142 other available SNP assays (O. nerka = 103 [126 total]; O. kisutch = 30[61 total]) were used to genotype collections of O. nerka (N = 5) and O. kisutch (N = 4) from various sites in the Columbia River to evaluate the utility of these markers in this region. Results from factorial correspondence analysis (FCA) indicate that these SNP markers are capable of distinguishing O. nerka populations, but O. kisutch collections were less distinct due to their common ancestry.
Size data for transgenic coho salmon from 5 rivers
<p>Experiments examining potential impacts of growth hormone (GH) transgenesis in fish typically use a single source strain, and do not address potential differential impacts in strains of different genetic backgrounds. Here, we examine the effects of differing genetic backgrounds on the growth of transgenic and non-transgenic coho salmon produced by mating sires from different rivers with transgenic dams from a single origin. We found a significant difference in size between offspring of sires originating from various river systems in British Columbia. This difference was independent of differences between transgenotypes (i.e., transgenic vs. non-transgenic offspring). However, the effects of strain or sire were relatively small compared to the effects of the transgene, which were consistent regardless of sire origin. Thus, results derived from studies of GH transgenic fish from a single source pouplation could provide useful information for assessments of GH transgenic salmon from other systems. This has important implications for examining potential risks from introgression of a transgene into different populations.</p>
Project data for: Juvenile salmon habitat use drives variation in growth and highlights vulnerability to river fragmentation
<p>Project data for:</p> <p>Sethi SA, Carey MP, Gerken J, Harris B, Cunningham C, Wolf N, Restrepo F, Ashline J (2022) Juvenile salmon habitat use drives variation in growth and highlights vulnerability to river fragmentation. <em>Ecosphere</em>. In press.</p> <p>Files include a ReadMe text file and a .csv data file.</p>
Figure 2 in giant, spike-toothed salmon, Oncorhynchus rastrosus and the "Proto-Tuolumne River" (early Pliocene) of Central California
Figure 2. Physical differences in marine vs freshwater (spawning) stages of extant Sockeye salmon, the closest living relative of O. rastrosus (photos from www.arkive.com).
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Allen Brain Atlas
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
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OpenNeuro
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