Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
1,868
datasets available to search
ShareScore release 0.9.0
Dataset results
1,868 results for “Spatial Data”
Raw data for "Sparse periodicity-based auditory features explain human performance in a spatial multi-talker auditory scene analysis task"
<p>Raw data for the simulation study " Sparse periodicity-based auditory features explain human performance in a spatial multi-talker auditory scene analysis task" [1].</p> <p>[1] Josupeit, A., Schoenmaker, E., van de Par, S., & Hohmann, V. (2018). Sparse periodicity‐based auditory features explain human performance in a spatial multitalker auditory scene analysis task. <em>European Journal of Neuroscience</em>, https://doi.org/10.1111/ejn.13981.</p>
Data and code from: Evaluating spatially explicit density estimates of unmarked wildlife detected by remote cameras.
<p>Detection data from American black bears and code used in "Evaluating spatially explicit density estimates of unmarked wildlife detected by remote cameras" published in the Journal of Applied Ecology (Evans & Rittenhouse 2018). Unmarked detection data was collected using remote cameras in northwest Connecticut in 2014, and individual detection data was determined from unique genotypes obtained from non-invasive hair snares constructed at camera sampling locations.</p> <p>EN14.rds contains detection data as an R list:</p> <p>$y (num): J (sites) x K (occasions) matrix containing detection counts</p> <p>$X (int): 2 x J matrix of site coordinates</p> <p>$xlims (num): bounding x-coordinates</p> <p>$ylims (num): bounding y-coordinates</p> <p>$M (int): upper bound for super population of individuals</p> <p>$nTraps (int): number of sampling sites (J)</p> <p>$nReps (int): number of MCMC interations</p> <p>$forest (num): vector of site-specific covariates</p> <p>$mark (int): K x I matrix storing site numbers at which individual (i) was detected on occasion k</p> <p>FullModel.R provides functions used to fit constant density models to unmarked detections incorporating covariates of detection probability.</p> <p>partialID.R provides functions and code used to estimate density from mixtures of marked and unmarked detection data</p> <p>VariableDensity.R provides functions and code used to fit variable density models to unmarked detection data incorporating spatial covariates of density.</p> <p> </p>
Characterizing cell-type spatial relationships across length scales in spatially resolved omics data: data repository
<h1>CRAWDAD</h1> <p>Spatially resolved omics (SRO) technologies enable the identification of cell types while preserving their organization within tissues. Application of such technologies offers the opportunity to delineate cell-type spatial relationships, particularly across different length scales, and enhance our understanding of tissue organization and function. To quantify such multi-scale cell-type spatial relationships, we develop CRAWDAD, Cell-type Relationship Analysis Workflow Done Across Distances, as an open-source R package with source code and additional documentation at https://jef.works/CRAWDAD/.</p> <p>During CRAWDAD's development, we generated simulated datasets and new cell-type annotations for human spleen data, provided here. The external datasets such as the mouse cerebellum, mouse embryo, mouse brain, and human breast cancer data used in the paper can be found in their original publication. See more information in CRAWDAD's data availability statement.</p> <h2>Simulated Datasets</h2> <ul> <li>sim.csv: the simulated data. Used in Figure 1 b-g, Supplementary Figure 1 a-c, and Supplementary Figure 9 a-b.</li> <li>ext_sim.csv: the extended simulated data. Used in Supplementary Figure 1 d-f.</li> <li>null_sim_visualization.csv: the null simulated data. Used to generate the plots Supplementary Figure 2 a-d.</li> <li>null_sim_1.csv - null_sim_10.csv: the 10 null simulated datasets. Used to quantitatively compare CRAWDAD, Squidpy’s co-occurrence implementation, and Ripley’s K Cross.</li> </ul> <h2>HuBMAP Datasets</h2> <ul> <li>pkhl.csv: annotated cell types and positions of sample HBM389.PKHL.936 from donor HBM966.VNKN.965. Used in Figure 5 a-h, Supplementary Figure 5 a, Supplementary Figure 7 a-c, and Supplementary Figure 8 c. doi:10.35079/HBM389.PKHL.936</li> <li>xxcd.csv: annotated cell types and positions of sample HBM772.XXCD.697 from donor HBM966.VNKN.965. Used in Figure 5 d-h, Supplementary Figure 5 a-c, and Supplementary Figure 7 a-c. doi:10.35079/HBM772.XXCD.697</li> <li>fsld.csv: annotated cell types and positions of sample HBM342.FSLD.938 from donor HBM245.ZWNT.288. Used in Figure 5 e-f, h, Supplementary Figure 5 a-c, Supplementary Figure 6 a-b, and Supplementary Figure 7 a-c. doi:10.35079/HBM342.FSLD.938</li> <li>pbvn.csv: annotated cell types and positions of sample HBM825.PBVN.284 from donor HBM245.ZWNT.288. Used in Figure 5 e-f, h, Supplementary Figure 5 a-c, Supplementary Figure 6 a-b, and Supplementary Figure 7 a-c. doi:10.35079/HBM825.PBVN.284</li> <li>ksfb.csv: annotated cell types and positions of sample HBM556.KSFB.592 from donor HBM298.KGNJ.374. Used in Figure 5 e-f, h, Supplementary Figure 5 a-c, Supplementary Figure 6 a-b, and Supplementary Figure 7 a-c. doi:10.35079/HBM556.KSFB.592</li> <li>ngpl.csv: annotated cell types and positions of sample HBM568.NGPL.345 from donor HBM298.KGNJ.374. Used in Figure 5 e-f, h, Supplementary Figure 5 a-c, Supplementary Figure 6 a-b, and Supplementary Figure 7 a-c. doi:10.35079/HBM568.NGPL.345</li> </ul> <h2>External Datasets</h2> <ul> <li>Mouse cerebellum: Used in Figure 2 a-e, Supplementary Figure 3 a-b, Supplementary Figure 4 a-d, and Supplementary Figure 8 a.</li> <li>Mouse embryo: Used in Figure 2 f-j, Supplementary Figure 3 c-d, Supplementary Figure 4 e-h, and Supplementary Figure 8 b.</li> <li>Human breast cancer: Used in Figure 3 a-c.</li> <li>Mouse brains: Used in Figure 4 a-e.</li> </ul>
Spatial clustering of Neobuccinum eatoni occurrence data for potential distribution modeling
<p>The occurrence dataset for <em>Neobuccinum eatoni</em> was compiled through filtration process, starting with records from the Global Biodiversity Information Facility (GBIF) and supplemented by museum specimens and additional sources like SOMBASE, iBOL, NIWA, ANTABIF, and SCAR-AntOBIS. Further data were sourced from the National Museum of Natural History in Paris, the University of Vigo, and recent fieldwork in Antarctica, Heard Island, and Kerguelen Island. Records were meticulously screened to remove misidentified specimens, inaccurate locations, duplicates, and outdated entries, ensuring accuracy and relevance. To address spatial autocorrelation, clustering methods divided the data into distinct geographic clusters, producing a refined dataset used to model <em>N. eatoni</em>'s potential distribution with enhanced predictive reliability by reducing spatial autocorrelation effects.</p>
Daily time series of spatially enhanced relative humidity for Europe at 1000 m resolution (Set 5: 2020 - 2021) derived from ERA5-Land data
<p>Overview:<br> ERA5-Land is a reanalysis dataset providing a consistent view of the evolution of land variables over several decades at an enhanced resolution compared to ERA5. ERA5-Land has been produced by replaying the land component of the ECMWF ERA5 climate reanalysis. Reanalysis combines model data with observations from across the world into a globally complete and consistent dataset using the laws of physics. Reanalysis produces data that goes several decades back in time, providing an accurate description of the climate of the past.</p> <p>Processing steps:<br> The original hourly ERA5-Land air temperature 2 m above ground and dewpoint temperature 2 m data has been spatially enhanced from 0.1 degree to 30 arc seconds (approx. 1000 m) spatial resolution by image fusion with CHELSA data (V1.2) (<a href="https://chelsa-climate.org/">https://chelsa-climate.org/</a>). For each day we used the corresponding monthly long-term average of CHELSA. The aim was to use the fine spatial detail of CHELSA and at the same time preserve the general regional pattern and fine temporal detail of ERA5-Land. The steps included aggregation and enhancement, specifically:<br> 1. spatially aggregate CHELSA to the resolution of ERA5-Land<br> 2. calculate difference of ERA5-Land - aggregated CHELSA<br> 3. interpolate differences with a Gaussian filter to 30 arc seconds<br> 4. add the interpolated differences to CHELSA</p> <p>Subsequently, the temperature time series have been aggregated on a daily basis. From these, daily relative humidity has been calculated for the time period 01/2000 - 07/2021.</p> <p>Relative humidity (rh2m) has been calculated from air temperature 2 m above ground (Ta) and dewpoint temperature 2 m above ground (Td) using the formula for saturated water pressure from Wright (1997):</p> <p><code>maximum water pressure = 611.21 * exp(17.502 * Ta / (240.97 + Ta))</code></p> <p><code>actual water pressure = 611.21 * exp(17.502 * Td / (240.97 + Td))</code></p> <p><code>relative humidity = actual water pressure / maximum water pressure</code></p> <p>Data provided is the daily averages of relative humidity. This set provides data for the years 2020 - 2021. For other time periods, please see further linked data sets.</p> <p>Resultant values have been converted to represent percent * 10, thus covering a theoretical range of [0, 1000].</p> <p>The data have been reprojected to EU LAEA.</p> <p>File naming scheme (YYYY = year; MM = month; DD = day):<br> <code>ERA5_land_rh2m_avg_daily_YYYYMMDD.tif</code></p> <p>Projection + EPSG code:<br> EU LAEA (EPSG: 3035)</p> <p>Spatial extent:<br> north: 6874000<br> south: -485000<br> west: 869000<br> east: 8712000</p> <p>Spatial resolution:<br> 1000 m</p> <p>Temporal resolution:<br> Daily</p> <p>Pixel values:<br> Percent * 10 (scaled to Integer; example: value 738 = 73.8 %)</p> <p>Software used:<br> GDAL 3.2.2 and GRASS GIS 8.0.0</p> <p>Original ERA5-Land dataset license:<br> <a href="https://apps.ecmwf.int/datasets/licences/copernicus/">https://apps.ecmwf.int/datasets/licences/copernicus/</a></p> <p>CHELSA climatologies (V1.2):<br> Data used: Karger D.N., Conrad, O., Böhner, J., Kawohl, T., Kreft, H., Soria-Auza, R.W., Zimmermann, N.E, Linder, H.P., Kessler, M. (2018): Data from: Climatologies at high resolution for the earth's land surface areas. Dryad digital repository. <a href="http://dx.doi.org/doi:10.5061/dryad.kd1d4">http://dx.doi.org/doi:10.5061/dryad.kd1d4</a><br> Original peer-reviewed publication: Karger, D.N., Conrad, O., Böhner, J., Kawohl, T., Kreft, H., Soria-Auza, R.W., Zimmermann, N.E., Linder, P., Kessler, M. (2017): Climatologies at high resolution for the Earth land surface areas. Scientific Data. 4 170122. <a href="https://doi.org/10.1038/sdata.2017.122">https://doi.org/10.1038/sdata.2017.122</a></p> <p>Processed by:<br> mundialis GmbH & Co. KG, Germany (<a href="https://www.mundialis.de/">https://www.mundialis.de/</a>)</p> <p>Reference: Wright, J.M. (1997): Federal meteorological handbook no. 3 (FCM-H3-1997). Office of Federal Coordinator for Meteorological Services and Supporting Research. Washington, DC</p> <p>Data is also available in Latitude-Longitude/WGS84 (EPSG: 4326) projection: <a href="http://https://doi.org/10.5281/zenodo.6344125">https://doi.org/10.5281/zenodo.6344125</a></p>
Daily time series of spatially enhanced relative humidity for Europe at 1000 m resolution (Set 3: 2010 - 2014) derived from ERA5-Land data
<p>Overview:<br> ERA5-Land is a reanalysis dataset providing a consistent view of the evolution of land variables over several decades at an enhanced resolution compared to ERA5. ERA5-Land has been produced by replaying the land component of the ECMWF ERA5 climate reanalysis. Reanalysis combines model data with observations from across the world into a globally complete and consistent dataset using the laws of physics. Reanalysis produces data that goes several decades back in time, providing an accurate description of the climate of the past.</p> <p>Processing steps:<br> The original hourly ERA5-Land air temperature 2 m above ground and dewpoint temperature 2 m data has been spatially enhanced from 0.1 degree to 30 arc seconds (approx. 1000 m) spatial resolution by image fusion with CHELSA data (V1.2) (<a href="https://chelsa-climate.org/">https://chelsa-climate.org/</a>). For each day we used the corresponding monthly long-term average of CHELSA. The aim was to use the fine spatial detail of CHELSA and at the same time preserve the general regional pattern and fine temporal detail of ERA5-Land. The steps included aggregation and enhancement, specifically:<br> 1. spatially aggregate CHELSA to the resolution of ERA5-Land<br> 2. calculate difference of ERA5-Land - aggregated CHELSA<br> 3. interpolate differences with a Gaussian filter to 30 arc seconds<br> 4. add the interpolated differences to CHELSA</p> <p>Subsequently, the temperature time series have been aggregated on a daily basis. From these, daily relative humidity has been calculated for the time period 01/2000 - 07/2021.</p> <p>Relative humidity (rh2m) has been calculated from air temperature 2 m above ground (Ta) and dewpoint temperature 2 m above ground (Td) using the formula for saturated water pressure from Wright (1997):</p> <p><code>maximum water pressure = 611.21 * exp(17.502 * Ta / (240.97 + Ta))</code></p> <p><code>actual water pressure = 611.21 * exp(17.502 * Td / (240.97 + Td))</code></p> <p><code>relative humidity = actual water pressure / maximum water pressure</code></p> <p>Data provided is the daily averages of relative humidity. This set provides data for the years 2010 - 2014. For other time periods, please see further linked data sets.</p> <p>Resultant values have been converted to represent percent * 10, thus covering a theoretical range of [0, 1000].</p> <p>The data have been reprojected to EU LAEA.</p> <p>File naming scheme (YYYY = year; MM = month; DD = day):<br> <code>ERA5_land_rh2m_avg_daily_YYYYMMDD.tif</code></p> <p>Projection + EPSG code:<br> EU LAEA (EPSG: 3035)</p> <p>Spatial extent:<br> north: 6874000<br> south: -485000<br> west: 869000<br> east: 8712000</p> <p>Spatial resolution:<br> 1000 m</p> <p>Temporal resolution:<br> Daily</p> <p>Pixel values:<br> Percent * 10 (scaled to Integer; example: value 738 = 73.8 %)</p> <p>Software used:<br> GDAL 3.2.2 and GRASS GIS 8.0.0</p> <p>Original ERA5-Land dataset license:<br> <a href="https://apps.ecmwf.int/datasets/licences/copernicus/">https://apps.ecmwf.int/datasets/licences/copernicus/</a></p> <p>CHELSA climatologies (V1.2):<br> Data used: Karger D.N., Conrad, O., Böhner, J., Kawohl, T., Kreft, H., Soria-Auza, R.W., Zimmermann, N.E, Linder, H.P., Kessler, M. (2018): Data from: Climatologies at high resolution for the earth's land surface areas. Dryad digital repository. <a href="http://dx.doi.org/doi:10.5061/dryad.kd1d4">http://dx.doi.org/doi:10.5061/dryad.kd1d4</a><br> Original peer-reviewed publication: Karger, D.N., Conrad, O., Böhner, J., Kawohl, T., Kreft, H., Soria-Auza, R.W., Zimmermann, N.E., Linder, P., Kessler, M. (2017): Climatologies at high resolution for the Earth land surface areas. Scientific Data. 4 170122. <a href="https://doi.org/10.1038/sdata.2017.122">https://doi.org/10.1038/sdata.2017.122</a></p> <p>Processed by:<br> mundialis GmbH & Co. KG, Germany (<a href="https://www.mundialis.de/">https://www.mundialis.de/</a>)</p> <p>Reference: Wright, J.M. (1997): Federal meteorological handbook no. 3 (FCM-H3-1997). Office of Federal Coordinator for Meteorological Services and Supporting Research. Washington, DC</p> <p>Data is also available in Latitude-Longitude/WGS84 (EPSG: 4326) projection: <a href="http://https://doi.org/10.5281/zenodo.6344012">https://doi.org/10.5281/zenodo.6344012</a></p>
Daily time series of spatially enhanced relative humidity for Europe at 1000 m resolution (Set 2: 2005 - 2009) derived from ERA5-Land data
<p>Overview:<br> ERA5-Land is a reanalysis dataset providing a consistent view of the evolution of land variables over several decades at an enhanced resolution compared to ERA5. ERA5-Land has been produced by replaying the land component of the ECMWF ERA5 climate reanalysis. Reanalysis combines model data with observations from across the world into a globally complete and consistent dataset using the laws of physics. Reanalysis produces data that goes several decades back in time, providing an accurate description of the climate of the past.</p> <p>Processing steps:<br> The original hourly ERA5-Land air temperature 2 m above ground and dewpoint temperature 2 m data has been spatially enhanced from 0.1 degree to 30 arc seconds (approx. 1000 m) spatial resolution by image fusion with CHELSA data (V1.2) (<a href="https://chelsa-climate.org/">https://chelsa-climate.org/</a>). For each day we used the corresponding monthly long-term average of CHELSA. The aim was to use the fine spatial detail of CHELSA and at the same time preserve the general regional pattern and fine temporal detail of ERA5-Land. The steps included aggregation and enhancement, specifically:<br> 1. spatially aggregate CHELSA to the resolution of ERA5-Land<br> 2. calculate difference of ERA5-Land - aggregated CHELSA<br> 3. interpolate differences with a Gaussian filter to 30 arc seconds<br> 4. add the interpolated differences to CHELSA</p> <p>Subsequently, the temperature time series have been aggregated on a daily basis. From these, daily relative humidity has been calculated for the time period 01/2000 - 07/2021.</p> <p>Relative humidity (rh2m) has been calculated from air temperature 2 m above ground (Ta) and dewpoint temperature 2 m above ground (Td) using the formula for saturated water pressure from Wright (1997):</p> <p><code>maximum water pressure = 611.21 * exp(17.502 * Ta / (240.97 + Ta))</code></p> <p><code>actual water pressure = 611.21 * exp(17.502 * Td / (240.97 + Td))</code></p> <p><code>relative humidity = actual water pressure / maximum water pressure</code></p> <p>Data provided is the daily averages of relative humidity. This set provides data for the years 2005 - 2009. For other time periods, please see further linked data sets.</p> <p>Resultant values have been converted to represent percent * 10, thus covering a theoretical range of [0, 1000].</p> <p>The data have been reprojected to EU LAEA.</p> <p>File naming scheme (YYYY = year; MM = month; DD = day):<br> <code>ERA5_land_rh2m_avg_daily_YYYYMMDD.tif</code></p> <p>Projection + EPSG code:<br> EU LAEA (EPSG: 3035)</p> <p>Spatial extent:<br> north: 6874000<br> south: -485000<br> west: 869000<br> east: 8712000</p> <p>Spatial resolution:<br> 1000 m</p> <p>Temporal resolution:<br> Daily</p> <p>Pixel values:<br> Percent * 10 (scaled to Integer; example: value 738 = 73.8 %)</p> <p>Software used:<br> GDAL 3.2.2 and GRASS GIS 8.0.0</p> <p>Original ERA5-Land dataset license:<br> <a href="https://apps.ecmwf.int/datasets/licences/copernicus/">https://apps.ecmwf.int/datasets/licences/copernicus/</a></p> <p>CHELSA climatologies (V1.2):<br> Data used: Karger D.N., Conrad, O., Böhner, J., Kawohl, T., Kreft, H., Soria-Auza, R.W., Zimmermann, N.E, Linder, H.P., Kessler, M. (2018): Data from: Climatologies at high resolution for the earth's land surface areas. Dryad digital repository. <a href="http://dx.doi.org/doi:10.5061/dryad.kd1d4">http://dx.doi.org/doi:10.5061/dryad.kd1d4</a><br> Original peer-reviewed publication: Karger, D.N., Conrad, O., Böhner, J., Kawohl, T., Kreft, H., Soria-Auza, R.W., Zimmermann, N.E., Linder, P., Kessler, M. (2017): Climatologies at high resolution for the Earth land surface areas. Scientific Data. 4 170122. <a href="https://doi.org/10.1038/sdata.2017.122">https://doi.org/10.1038/sdata.2017.122</a></p> <p>Processed by:<br> mundialis GmbH & Co. KG, Germany (<a href="https://www.mundialis.de/">https://www.mundialis.de/</a>)</p> <p>Reference: Wright, J.M. (1997): Federal meteorological handbook no. 3 (FCM-H3-1997). Office of Federal Coordinator for Meteorological Services and Supporting Research. Washington, DC</p> <p>Data is also available in Latitude-Longitude/WGS84 (EPSG: 4326) projection: <a href="http://https://doi.org/10.5281/zenodo.6342822">https://doi.org/10.5281/zenodo.6342822</a></p>
Daily time series of spatially enhanced relative humidity for Europe at 1000 m resolution (Set 1: 2000 - 2004) derived from ERA5-Land data
<p>Overview:<br> ERA5-Land is a reanalysis dataset providing a consistent view of the evolution of land variables over several decades at an enhanced resolution compared to ERA5. ERA5-Land has been produced by replaying the land component of the ECMWF ERA5 climate reanalysis. Reanalysis combines model data with observations from across the world into a globally complete and consistent dataset using the laws of physics. Reanalysis produces data that goes several decades back in time, providing an accurate description of the climate of the past.</p> <p>Processing steps:<br> The original hourly ERA5-Land air temperature 2 m above ground and dewpoint temperature 2 m data has been spatially enhanced from 0.1 degree to 30 arc seconds (approx. 1000 m) spatial resolution by image fusion with CHELSA data (V1.2) (<a href="https://chelsa-climate.org/">https://chelsa-climate.org/</a>). For each day we used the corresponding monthly long-term average of CHELSA. The aim was to use the fine spatial detail of CHELSA and at the same time preserve the general regional pattern and fine temporal detail of ERA5-Land. The steps included aggregation and enhancement, specifically:<br> 1. spatially aggregate CHELSA to the resolution of ERA5-Land<br> 2. calculate difference of ERA5-Land - aggregated CHELSA<br> 3. interpolate differences with a Gaussian filter to 30 arc seconds<br> 4. add the interpolated differences to CHELSA</p> <p>Subsequently, the temperature time series have been aggregated on a daily basis. From these, daily relative humidity has been calculated for the time period 01/2000 - 07/2021.</p> <p>Relative humidity (rh2m) has been calculated from air temperature 2 m above ground (Ta) and dewpoint temperature 2 m above ground (Td) using the formula for saturated water pressure from Wright (1997):</p> <p><code>maximum water pressure = 611.21 * exp(17.502 * Ta / (240.97 + Ta))</code></p> <p><code>actual water pressure = 611.21 * exp(17.502 * Td / (240.97 + Td))</code></p> <p><code>relative humidity = actual water pressure / maximum water pressure</code></p> <p>Data provided is the daily averages of relative humidity. This set provides data for the years 2000 - 2004. For other time periods, please see further linked data sets.</p> <p>Resultant values have been converted to represent percent * 10, thus covering a theoretical range of [0, 1000].</p> <p>The data have been reprojected to EU LAEA.</p> <p>File naming scheme (YYYY = year; MM = month; DD = day):<br> <code>ERA5_land_rh2m_avg_daily_YYYYMMDD.tif</code></p> <p>Projection + EPSG code:<br> EU LAEA (EPSG: 3035)</p> <p>Spatial extent:<br> north: 6874000<br> south: -485000<br> west: 869000<br> east: 8712000</p> <p>Spatial resolution:<br> 1000 m</p> <p>Temporal resolution:<br> Daily</p> <p>Pixel values:<br> Percent * 10 (scaled to Integer; example: value 738 = 73.8 %)</p> <p>Software used:<br> GDAL 3.2.2 and GRASS GIS 8.0.0</p> <p>Original ERA5-Land dataset license:<br> <a href="https://apps.ecmwf.int/datasets/licences/copernicus/">https://apps.ecmwf.int/datasets/licences/copernicus/</a></p> <p>CHELSA climatologies (V1.2):<br> Data used: Karger D.N., Conrad, O., Böhner, J., Kawohl, T., Kreft, H., Soria-Auza, R.W., Zimmermann, N.E, Linder, H.P., Kessler, M. (2018): Data from: Climatologies at high resolution for the earth's land surface areas. Dryad digital repository. <a href="http://dx.doi.org/doi:10.5061/dryad.kd1d4">http://dx.doi.org/doi:10.5061/dryad.kd1d4</a><br> Original peer-reviewed publication: Karger, D.N., Conrad, O., Böhner, J., Kawohl, T., Kreft, H., Soria-Auza, R.W., Zimmermann, N.E., Linder, P., Kessler, M. (2017): Climatologies at high resolution for the Earth land surface areas. Scientific Data. 4 170122. <a href="https://doi.org/10.1038/sdata.2017.122">https://doi.org/10.1038/sdata.2017.122</a></p> <p>Processed by:<br> mundialis GmbH & Co. KG, Germany (<a href="https://www.mundialis.de/">https://www.mundialis.de/</a>)</p> <p>Reference: Wright, J.M. (1997): Federal meteorological handbook no. 3 (FCM-H3-1997). Office of Federal Coordinator for Meteorological Services and Supporting Research. Washington, DC</p> <p>Data is also available in Latitude-Longitude/WGS84 (EPSG: 4326) projection: <a href="https://doi.org/10.5281/zenodo.6342776">https://doi.org/10.5281/zenodo.6342776</a></p>
Daily time series of spatially enhanced relative humidity for Europe at 1000 m resolution (Set 4: 2015 - 2019) derived from ERA5-Land data
<p>Overview:<br> ERA5-Land is a reanalysis dataset providing a consistent view of the evolution of land variables over several decades at an enhanced resolution compared to ERA5. ERA5-Land has been produced by replaying the land component of the ECMWF ERA5 climate reanalysis. Reanalysis combines model data with observations from across the world into a globally complete and consistent dataset using the laws of physics. Reanalysis produces data that goes several decades back in time, providing an accurate description of the climate of the past.</p> <p>Processing steps:<br> The original hourly ERA5-Land air temperature 2 m above ground and dewpoint temperature 2 m data has been spatially enhanced from 0.1 degree to 30 arc seconds (approx. 1000 m) spatial resolution by image fusion with CHELSA data (V1.2) (<a href="https://chelsa-climate.org/">https://chelsa-climate.org/</a>). For each day we used the corresponding monthly long-term average of CHELSA. The aim was to use the fine spatial detail of CHELSA and at the same time preserve the general regional pattern and fine temporal detail of ERA5-Land. The steps included aggregation and enhancement, specifically:<br> 1. spatially aggregate CHELSA to the resolution of ERA5-Land<br> 2. calculate difference of ERA5-Land - aggregated CHELSA<br> 3. interpolate differences with a Gaussian filter to 30 arc seconds<br> 4. add the interpolated differences to CHELSA</p> <p>Subsequently, the temperature time series have been aggregated on a daily basis. From these, daily relative humidity has been calculated for the time period 01/2000 - 07/2021.</p> <p>Relative humidity (rh2m) has been calculated from air temperature 2 m above ground (Ta) and dewpoint temperature 2 m above ground (Td) using the formula for saturated water pressure from Wright (1997):</p> <p><code>maximum water pressure = 611.21 * exp(17.502 * Ta / (240.97 + Ta))</code></p> <p><code>actual water pressure = 611.21 * exp(17.502 * Td / (240.97 + Td))</code></p> <p><code>relative humidity = actual water pressure / maximum water pressure</code></p> <p>Data provided is the daily averages of relative humidity. This set provides data for the years 2015 - 2019. For other time periods, please see further linked data sets.</p> <p>Resultant values have been converted to represent percent * 10, thus covering a theoretical range of [0, 1000].</p> <p>The data have been reprojected to EU LAEA.</p> <p>File naming scheme (YYYY = year; MM = month; DD = day):<br> <code>ERA5_land_rh2m_avg_daily_YYYYMMDD.tif</code></p> <p>Projection + EPSG code:<br> EU LAEA (EPSG: 3035)</p> <p>Spatial extent:<br> north: 6874000<br> south: -485000<br> west: 869000<br> east: 8712000</p> <p>Spatial resolution:<br> 1000 m</p> <p>Temporal resolution:<br> Daily</p> <p>Pixel values:<br> Percent * 10 (scaled to Integer; example: value 738 = 73.8 %)</p> <p>Software used:<br> GDAL 3.2.2 and GRASS GIS 8.0.0</p> <p>Original ERA5-Land dataset license:<br> <a href="https://apps.ecmwf.int/datasets/licences/copernicus/">https://apps.ecmwf.int/datasets/licences/copernicus/</a></p> <p>CHELSA climatologies (V1.2):<br> Data used: Karger D.N., Conrad, O., Böhner, J., Kawohl, T., Kreft, H., Soria-Auza, R.W., Zimmermann, N.E, Linder, H.P., Kessler, M. (2018): Data from: Climatologies at high resolution for the earth's land surface areas. Dryad digital repository. <a href="http://dx.doi.org/doi:10.5061/dryad.kd1d4">http://dx.doi.org/doi:10.5061/dryad.kd1d4</a><br> Original peer-reviewed publication: Karger, D.N., Conrad, O., Böhner, J., Kawohl, T., Kreft, H., Soria-Auza, R.W., Zimmermann, N.E., Linder, P., Kessler, M. (2017): Climatologies at high resolution for the Earth land surface areas. Scientific Data. 4 170122. <a href="https://doi.org/10.1038/sdata.2017.122">https://doi.org/10.1038/sdata.2017.122</a></p> <p>Processed by:<br> mundialis GmbH & Co. KG, Germany (<a href="https://www.mundialis.de/">https://www.mundialis.de/</a>)</p> <p>Reference: Wright, J.M. (1997): Federal meteorological handbook no. 3 (FCM-H3-1997). Office of Federal Coordinator for Meteorological Services and Supporting Research. Washington, DC</p> <p>Data is also available in Latitude-Longitude/WGS84 (EPSG: 4326) projection: <a href="http://https://doi.org/10.5281/zenodo.6344066">https://doi.org/10.5281/zenodo.6344066</a></p>
Decadal time series of spatially enhanced relative humidity for Europe at 1000 m resolution (2000 - 2021) derived from ERA5-Land data
<p>Overview:<br> ERA5-Land is a reanalysis dataset providing a consistent view of the evolution of land variables over several decades at an enhanced resolution compared to ERA5. ERA5-Land has been produced by replaying the land component of the ECMWF ERA5 climate reanalysis. Reanalysis combines model data with observations from across the world into a globally complete and consistent dataset using the laws of physics. Reanalysis produces data that goes several decades back in time, providing an accurate description of the climate of the past.</p> <p>Processing steps:<br> The original hourly ERA5-Land air temperature 2 m above ground and dewpoint temperature 2 m data has been spatially enhanced from 0.1 degree to 30 arc seconds (approx. 1000 m) spatial resolution by image fusion with CHELSA data (V1.2) (<a href="https://chelsa-climate.org/">https://chelsa-climate.org/</a>). For each day we used the corresponding monthly long-term average of CHELSA. The aim was to use the fine spatial detail of CHELSA and at the same time preserve the general regional pattern and fine temporal detail of ERA5-Land. The steps included aggregation and enhancement, specifically:<br> 1. spatially aggregate CHELSA to the resolution of ERA5-Land<br> 2. calculate difference of ERA5-Land - aggregated CHELSA<br> 3. interpolate differences with a Gaussian filter to 30 arc seconds<br> 4. add the interpolated differences to CHELSA</p> <p>Subsequently, the temperature time series have been aggregated on a daily basis. From these, daily relative humidity has been calculated for the time period 01/2000 - 07/2021.</p> <p>Relative humidity (rh2m) has been calculated from air temperature 2 m above ground (Ta) and dewpoint temperature 2 m above ground (Td) using the formula for saturated water pressure from Wright (1997):</p> <p><code>maximum water pressure = 611.21 * exp(17.502 * Ta / (240.97 + Ta))</code></p> <p><code>actual water pressure = 611.21 * exp(17.502 * Td / (240.97 + Td))</code></p> <p><code>relative humidity = actual water pressure / maximum water pressure</code></p> <p>The resulting relative humidity has been aggregated to decadal averages. Each month is divided into three decades: the first decade of a month covers days 1-10, the second decade covers days 11-20, and the third decade covers days 21-last day of the month.</p> <p>Resultant values have been converted to represent percent * 10, thus covering a theoretical range of [0, 1000].</p> <p>The data have been reprojected to EU LAEA.</p> <p>File naming scheme (YYYY = year; MM = month; dD = number of decade):<br> <code>ERA5_land_rh2m_avg_decadal_YYYY_MM_dD.tif</code></p> <p>Projection + EPSG code:<br> EU LAEA (EPSG: 3035)</p> <p>Spatial extent:<br> north: 6874000<br> south: -485000<br> west: 869000<br> east: 8712000</p> <p>Spatial resolution:<br> 1000 m</p> <p>Temporal resolution:<br> Decadal</p> <p>Pixel values:<br> Percent * 10 (scaled to Integer; example: value 738 = 73.8 %)</p> <p>Software used:<br> GDAL 3.2.2 and GRASS GIS 8.0.0</p> <p>Original ERA5-Land dataset license:<br> <a href="https://apps.ecmwf.int/datasets/licences/copernicus/">https://apps.ecmwf.int/datasets/licences/copernicus/</a></p> <p>CHELSA climatologies (V1.2):<br> Data used: Karger D.N., Conrad, O., Böhner, J., Kawohl, T., Kreft, H., Soria-Auza, R.W., Zimmermann, N.E, Linder, H.P., Kessler, M. (2018): Data from: Climatologies at high resolution for the earth's land surface areas. Dryad digital repository. <a href="http://dx.doi.org/doi:10.5061/dryad.kd1d4">http://dx.doi.org/doi:10.5061/dryad.kd1d4</a><br> Original peer-reviewed publication: Karger, D.N., Conrad, O., Böhner, J., Kawohl, T., Kreft, H., Soria-Auza, R.W., Zimmermann, N.E., Linder, P., Kessler, M. (2017): Climatologies at high resolution for the Earth land surface areas. Scientific Data. 4 170122. <a href="https://doi.org/10.1038/sdata.2017.122">https://doi.org/10.1038/sdata.2017.122</a></p> <p>Processed by:<br> mundialis GmbH & Co. KG, Germany (<a href="https://www.mundialis.de/">https://www.mundialis.de/</a>)</p> <p>Reference: Wright, J.M. (1997): Federal meteorological handbook no. 3 (FCM-H3-1997). Office of Federal Coordinator for Meteorological Services and Supporting Research. Washington, DC</p> <p>Data is also available in Latitude-Longitude/WGS84 (EPSG: 4326) projection: <a href="http://https://doi.org/10.5281/zenodo.6147830">https://doi.org/10.5281/zenodo.6147830</a></p>
Data to reproduce the results: Statistical power of spatial earthquake forecast tests
<p>We provide data needed to reproduce the figures from the publication titled "Statistical power of spatial earthquake forecast tests".</p>
CoastSeg: Shoreline data at 30-m spatial resolution for 298 coastal counties of the conterminous USA, in geoJSON format.
<p>Region: 298 coastal counties of the conterminous USA</p> <p>Data fields:</p> <ol> <li>MEAN_SIG_WAVEHEIGHT</li> <li>TIDAL_RANGE</li> <li>CHLOROPHYLL</li> <li>TURBIDITY</li> <li>TEMP_MOISTURE</li> <li>EMU_PHYSICAL</li> <li>REGIONAL_SINUOSITY</li> <li>GHM</li> <li>MAX_SLOPE %</li> <li>OUTFLOW_DENSITY</li> <li>ERODIBILITY</li> <li>LENGTH_GEO</li> <li>ch_label</li> <li>river_label</li> <li>sinuosity_label</li> <li>slope_label</li> <li>tidal_label</li> <li>turbid_label</li> <li>wave_label</li> <li>CSU_Descriptor</li> <li>CSU_ID</li> </ol> <p>The data originally come from https://rmgsc.cr.usgs.gov/outgoing/ecosystems/Global/USGSEsriGlobalCoastalSegmentsv1.mpk</p> <p>The data are described in the following publication</p> <p>Roger Sayre, Suzanne Noble, Sharon Hamann, Rebecca Smith, Dawn Wright, Sean Breyer, Kevin Butler, Keith Van Graafeiland, Charlie Frye, Deniz Karagulle, Dabney Hopkins, Drew Stephens, Kevin Kelly, Zeenatul Basher, Devon Burton, Jill Cress, Karina Atkins, D. Paco Van Sistine, Beverly Friesen, Rebecca Allee, Tom Allen, Peter Aniello, Irawan Asaad, Mark John Costello, Kathy Goodin, Peter Harris, Maria Kavanaugh, Helen Lillis, Eleonora Manca, Frank Muller-Karger, Bjorn Nyberg, Rost Parsons, Justin Saarinen, Jac Steiner & Adam Reed (2019) A new 30 meter resolution global shoreline vector and associated global islands database for the development of standardized ecological coastal units, Journal of Operational Oceanography, 12:sup2, S47-S56, DOI: <a href="https://doi.org/10.1080/1755876X.2018.1529714">10.1080/1755876X.2018.1529714</a></p>
CoastSeg: Shoreline data at 30-m spatial resolution for 2001 coastal provinces or regions of the world, in geoJSON format.
<p>Region: 2001 coastal provinces or regions of the world</p> <p>Data fields:</p> <ol> <li>MEAN_SIG_WAVEHEIGHT</li> <li>TIDAL_RANGE</li> <li>CHLOROPHYLL</li> <li>TURBIDITY</li> <li>TEMP_MOISTURE</li> <li>EMU_PHYSICAL</li> <li>REGIONAL_SINUOSITY</li> <li>GHM</li> <li>MAX_SLOPE %</li> <li>OUTFLOW_DENSITY</li> <li>ERODIBILITY</li> <li>LENGTH_GEO</li> <li>ch_label</li> <li>river_label</li> <li>sinuosity_label</li> <li>slope_label</li> <li>tidal_label</li> <li>turbid_label</li> <li>wave_label</li> <li>CSU_Descriptor</li> <li>CSU_ID</li> </ol> <p>The data originally come from https://rmgsc.cr.usgs.gov/outgoing/ecosystems/Global/USGSEsriGlobalCoastalSegmentsv1.mpk</p> <p>The data are described in the following publication</p> <p>Roger Sayre, Suzanne Noble, Sharon Hamann, Rebecca Smith, Dawn Wright, Sean Breyer, Kevin Butler, Keith Van Graafeiland, Charlie Frye, Deniz Karagulle, Dabney Hopkins, Drew Stephens, Kevin Kelly, Zeenatul Basher, Devon Burton, Jill Cress, Karina Atkins, D. Paco Van Sistine, Beverly Friesen, Rebecca Allee, Tom Allen, Peter Aniello, Irawan Asaad, Mark John Costello, Kathy Goodin, Peter Harris, Maria Kavanaugh, Helen Lillis, Eleonora Manca, Frank Muller-Karger, Bjorn Nyberg, Rost Parsons, Justin Saarinen, Jac Steiner & Adam Reed (2019) A new 30 meter resolution global shoreline vector and associated global islands database for the development of standardized ecological coastal units, Journal of Operational Oceanography, 12:sup2, S47-S56, DOI: <a href="https://doi.org/10.1080/1755876X.2018.1529714">10.1080/1755876X.2018.1529714</a></p> <p>Metadata file (each file listed alongside the bounds in WGS84 latitude/longitude): province_files_bounds.json</p>
Data from: The spatial distribution and temporal trends of livestock damages caused by wolves in Europe
<p>The preprint of the corresponding manuscript can be found here: doi: https://doi.org/10.1101/2022.07.12.499715</p> <p>Wolf populations are recovering and expanding across Europe, causing conflicts with livestock owners. We here compiled incident-based livestock damage data caused by wolves across 21 European countries for the years 2018, 2019 and 2020.</p> <p>The file "<strong>wolf_damages_2018_2019_2020_complete_data_to_publish.csv</strong>" contains the following information per incident: country, target species, cause, number of animals killed/injured/missing, assessment level probability, reported date, number of days until inspection, location, incidentID, uniqueID, NUS1_ID, NUTS2_ID, NUTS3_ID, damage prevention measure, number of wolves attacking, latitude, longitude, comments, metadata constraints.</p> <p>The file "<strong>nuts3_regions_and_LC_where_wolves_are_present.csv</strong>" contains information of the percentage of area occupied by wolves per NUTS3 region for selected land cover variables.</p> <p>The file "<strong>prevention_measures.csv</strong>" contains information about the financial support of livestock damage prevention measure per country or NUTS region</p> <p>The file "<strong>wolf_presence_now_vs_50_years_ago_nuts3.csv</strong>" contains information on NUTS3 regions that had a documented wolf presence 50 years ago.</p> <p>The "<strong>scripts_to_publish.zip</strong>" folder contains the scripts that we used to conduct the analyses.</p>
CoastSeg: Shoreline data at 30-m spatial resolution for 5x5 degree regions of the world, in geoJSON format.
<p><em><strong>CoastSeg: global 30-m shoreline in 5x5 degree chunks</strong></em></p> <p>Data fields:</p> <ol> <li>MEAN_SIG_WAVEHEIGHT</li> <li>TIDAL_RANGE</li> <li>CHLOROPHYLL</li> <li>TURBIDITY</li> <li>TEMP_MOISTURE</li> <li>EMU_PHYSICAL</li> <li>REGIONAL_SINUOSITY</li> <li>GHM</li> <li>MAX_SLOPE %</li> <li>OUTFLOW_DENSITY</li> <li>ERODIBILITY</li> <li>LENGTH_GEO</li> <li>ch_label</li> <li>river_label</li> <li>sinuosity_label</li> <li>slope_label</li> <li>tidal_label</li> <li>turbid_label</li> <li>wave_label</li> <li>CSU_Descriptor</li> <li>CSU_ID</li> </ol> <p>The data originally come from https://rmgsc.cr.usgs.gov/outgoing/ecosystems/Global/USGSEsriGlobalCoastalSegmentsv1.mpk</p> <p>The data are described in the following publication</p> <p>Roger Sayre, Suzanne Noble, Sharon Hamann, Rebecca Smith, Dawn Wright, Sean Breyer, Kevin Butler, Keith Van Graafeiland, Charlie Frye, Deniz Karagulle, Dabney Hopkins, Drew Stephens, Kevin Kelly, Zeenatul Basher, Devon Burton, Jill Cress, Karina Atkins, D. Paco Van Sistine, Beverly Friesen, Rebecca Allee, Tom Allen, Peter Aniello, Irawan Asaad, Mark John Costello, Kathy Goodin, Peter Harris, Maria Kavanaugh, Helen Lillis, Eleonora Manca, Frank Muller-Karger, Bjorn Nyberg, Rost Parsons, Justin Saarinen, Jac Steiner & Adam Reed (2019) A new 30 meter resolution global shoreline vector and associated global islands database for the development of standardized ecological coastal units, Journal of Operational Oceanography, 12:sup2, S47-S56, DOI: <a href="https://doi.org/10.1080/1755876X.2018.1529714">10.1080/1755876X.2018.1529714</a></p> <p>Metadata file (each file listed alongside the bounds in WGS84 latitude/longitude): global_5x5grid.geojson</p>
CoastSeg: Shoreline data at 30-m spatial resolution for 5x5 degree regions of the world, in geoJSON format. Version 2.
<p><em><strong>CoastSeg: global 30-m shoreline in 5x5 degree chunks</strong></em></p> <p>Data fields:</p> <ol> <li>MEAN_SIG_WAVEHEIGHT</li> <li>TIDAL_RANGE</li> <li>CHLOROPHYLL</li> <li>TURBIDITY</li> <li>TEMP_MOISTURE</li> <li>EMU_PHYSICAL</li> <li>REGIONAL_SINUOSITY</li> <li>GHM</li> <li>MAX_SLOPE %</li> <li>OUTFLOW_DENSITY</li> <li>ERODIBILITY</li> <li>LENGTH_GEO</li> <li>ch_label</li> <li>river_label</li> <li>sinuosity_label</li> <li>slope_label</li> <li>tidal_label</li> <li>turbid_label</li> <li>wave_label</li> <li>CSU_Descriptor</li> <li>CSU_ID</li> </ol> <p>The data originally come from https://rmgsc.cr.usgs.gov/outgoing/ecosystems/Global/USGSEsriGlobalCoastalSegmentsv1.mpk</p> <p>The data are described in the following publication</p> <p>Roger Sayre, Suzanne Noble, Sharon Hamann, Rebecca Smith, Dawn Wright, Sean Breyer, Kevin Butler, Keith Van Graafeiland, Charlie Frye, Deniz Karagulle, Dabney Hopkins, Drew Stephens, Kevin Kelly, Zeenatul Basher, Devon Burton, Jill Cress, Karina Atkins, D. Paco Van Sistine, Beverly Friesen, Rebecca Allee, Tom Allen, Peter Aniello, Irawan Asaad, Mark John Costello, Kathy Goodin, Peter Harris, Maria Kavanaugh, Helen Lillis, Eleonora Manca, Frank Muller-Karger, Bjorn Nyberg, Rost Parsons, Justin Saarinen, Jac Steiner & Adam Reed (2019) A new 30 meter resolution global shoreline vector and associated global islands database for the development of standardized ecological coastal units, Journal of Operational Oceanography, 12:sup2, S47-S56, DOI: <a href="https://doi.org/10.1080/1755876X.2018.1529714">10.1080/1755876X.2018.1529714</a></p> <p>Metadata file (each file listed alongside the bounds in WGS84 latitude/longitude): global_5x5grid.geojson</p>
Data Used for "Mapping Tribes: Ottoman Spatial Thinking in Iraq and Arabia, c. 1910"
<p>This repository contains data used for our article, "Mapping Tribes: Ottoman Spatial Thinking in Iraq and Arabia, c. 1910". The README.md file explains the contents. This data can also be found at https://github.com/opengulf/ottoman-map.</p>
Spatial data sets of the paper Heinrich Stadial 1 continental sand dunes and Middle to Late Holocene paleosol sequences in SE Iberia: implications for human occupation and site formation processes
<p>Spatial data sets of the paper Heinrich Stadial 1 continental sand dunes and Middle to Late Holocene paleosol sequences in SE Iberia: implications for human occupation and site formation processes. This data set is composed by 3 shapefiles:</p> <ol> <li>Dune_field: Feature class polygon shapefile geometry representing the individual dunes identified in the Villena dune field.</li> <li>Sampled dunes: Shapefile of point geometry representing the location of the stratigraphic sequences of CC1, CC2 and CC3 sampled for texture, soil chemistry, OSL and radiocarbon dating. </li> <li>Sediment sourcing samples: Shapefile of point geometry representing the location of the reference samples of El Moron, El Arenal de la Virgen and Sierra del Castellar. </li> </ol> <p>The spatial reference system is EPSG 25830.</p>
Data and code associated with "Spatial wavefront shaping with a nanostructured metasurface for structured illumination microscopy"
<p>Data and code associated with the manuscript "Spatial wavefront shaping with a nanostructured metasurface for structured illumination microscopy"</p>
Recalibration of the lunar chronology due to spatial cratering-rate variability - Data and code
<ul> <li>CR_moon.csv: Relative cratering rate shown in Fig.2. The<strong> </strong>data are provided over the full range of latitudes and longitudes, with a 1-degree bin.</li> <li>cr_lefeuvre2011.txt: Relative cratering rate proposed by Le Feuvre and Wieczorek (2011). The<strong> </strong>data are provided over the full range of latitudes and longitudes, with a 1-degree bin.</li> <li>lunar_calib_points.csv: Table summarising the lunar chronology calibration points used in this study. </li> <li>Lagain_AA_convert_age.m: Matlab code converting model ages of Plutarch and Kirkwood craters from Neukum et al. (2001) chronology into the one presented in this study. The code also computes the chronology model from Le Feuvre and Wieczorek (2011) and the one presented in this study for different locations, and compares it with the Neukum et al. (2001) chronology.</li> </ul>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.