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79
datasets available to search
ShareScore release 0.9.0
Dataset results
79 results for “Three-dimensional Genome”
Three-dimensional analysis of genome organization in CTCF-WT and CTCF-KO dendritic cells (ChiP-Seq II)
GEO Series GSE215042. Mus musculus. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Three-dimensional analysis of genome organization in CTCF-WT and CTCF-KO dendritic cells (HiChIP II)
GEO Series GSE215044. Mus musculus. 8 samples. Type: Other.
Three-dimensional analysis of genome organization in CTCF-WT and CTCF-KO dendritic cells (RNA-Seq II)
GEO Series GSE215043. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
The three-dimensional structure of Epstein-Barr virus genome varies by latency type and is regulated by PARP1 enzymatic activity [ChIP-Seq]
GEO Series GSE159834. human gammaherpesvirus 4. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
The three-dimensional genomic organization changes in terminal erythropoiesis reveal independence of chromatin condensation from nuclear condensation [ATAC-Seq]
GEO Series GSE185468. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
The three-dimensional genome structure shapes the recombination landscape of chromatin features during female germline stem cell development [RNA-Seq]
GEO Series GSE199583. Mus musculus. 3 samples. Type: Expression profiling by high throughput sequencing.
Three-dimensional genome re-wiring in loci with Human Accelerated Regions
GEO Series GSE183137. Homo sapiens; Pan troglodytes. 8 samples. Type: Other.
Three-dimensional analysis of genome organization in CTCF-WT and CTCF-KO dendritic cells (HiC)
GEO Series GSE185882. Mus musculus. 8 samples. Type: Other.
H3K9ac-marked three-dimensional genome dynamics in rice under drought stress [ChIA-PET]
GEO Series GSE242455. Oryza sativa. 8 samples. Type: Other.
Transient histone deacetylase inhibition induces cellular memory of gene expression and three-dimensional genome folding
GEO Series GSE281151. Mus musculus. 259 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other.
Pseudogenes contribute to the evolution of topological domains across species via forming three-dimensional genome [Hi-C]
GEO Series GSE246661. Homo sapiens. 4 samples. Type: Other.
The APOLO long noncoding RNA directly modulates three-dimensional conformation of multiple distal loci across the Arabidopsis genome
GEO Series GSE117486. Arabidopsis thaliana. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Pseudogenes contribute to the evolution of topological domains across species via forming three-dimensional genome
GEO Series GSE246663. Homo sapiens. 22 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other.
Three-dimensional genome architecture persists in a 52,000-year-old woolly mammoth skin sample
GEO Series GSE268050. Bos taurus; Homo sapiens; Elephas maximus indicus; Equus asinus; Mammuthus primigenius. 136 samples. Type: Other; Third-party reanalysis.
Pseudogenes contribute to the evolution of topological domains across species via forming three-dimensional genome [RNA-Seq_mouse]
GEO Series GSE297129. Mus musculus. 10 samples. Type: Expression profiling by high throughput sequencing.
Pseudogenes contribute to the evolution of topological domains across species via forming three-dimensional genome [RNA-Seq]
GEO Series GSE246286. Homo sapiens. 10 samples. Type: Expression profiling by high throughput sequencing.
Pseudogenes contribute to the evolution of topological domains across species via forming three-dimensional genome [hESC_KO_Hi-C]
GEO Series GSE297131. Homo sapiens. 2 samples. Type: Other.
Pseudogenes contribute to the evolution of topological domains across species via forming three-dimensional genome [mESC_KI_Hi-C]
GEO Series GSE297130. Mus musculus. 5 samples. Type: Other.
Pseudogenes contribute to the evolution of topological domains across species via forming three-dimensional genome [ChIP-seq]
GEO Series GSE246285. Homo sapiens. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.