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Fig. 6 in Diversity and evolution of Hunter-Schreger Band configuration in tooth enamel of perissodactyl mammals
Fig. 6. Curved HSB configuration in Heptodon calciculus Cope, 1880 (KOE 4035, 4036); early Eocene, Willwood Formation, Bighorn Basin, Wyoming, USA. A. Tangential section of the posterior loph of a lower molar with two fields of curved HSB with the typical interface. B. Tangential section of the protoconid of a lower molar with the transverse HSB. Abbreviation: if, interface between fields of HSB.
Fig. 4 in Diversity and evolution of Hunter-Schreger Band configuration in tooth enamel of perissodactyl mammals
Fig. 4. Schematic illustration of the four configurations of Hunter−Schreger Bands (HSB) found in Perissodactyla: A. Transverse HSB configuration. B. Curved HSB configuration with interface. C. Compound HSB configuration with transverse HSB in an inner layer and vertical HSB in an outer layer. D. Vertical HSB configuration.
Fig. 10 in Diversity and evolution of Hunter-Schreger Band configuration in tooth enamel of perissodactyl mammals
Fig. 10. HSB configuration in the incisors of the rhinocerotid Menoceras arikarense (Barbour, 1906) (USNM 412981); early Miocene, Arikaree Formation, Agate, Nebraska, USA. A. The lower incisor with an almost vertical shearing blade has transverse HSB. B, C. In the upper incisor with a shearing blade oblique to the growing axis the HSB are almost vertical.
Fig. 2 in Diversity and evolution of Hunter-Schreger Band configuration in tooth enamel of perissodactyl mammals
Fig. 2. Appearance of the HSB in variable light. A. Scheme of the fiber optic light guide effect of enamel prisms. Those prisms illuminated perpendicular to the long axis reflect brightly, while those illuminated parallel to the long axis appear dark. B. Transverse HSB illuminated from the left side in an incisor of the artiodactyl Myotragus. Note the regular bifurcation of the light bands to the left, of the dark bands to the right. C–E. Vertical HSB in an etched ground section of a molar of Coelodonta antiquitatis (Blumenbach, 1799) (Upper Pleistocene, Germany KOE 59) illuminated from different sides. Light source on the left (C), light source on the right (D), light source perpendicular to the direction of the bands (E), highlighting the transitional zones. White dotted lines connect identical spots.
Fig. 1 in Diversity and evolution of Hunter-Schreger Band configuration in tooth enamel of perissodactyl mammals
Fig. 1. Vertical HSB configuration as figured by Quenstedt (1852: pl. 2: 1 [A]; pl. 3: 35 [B]). A. Occlusial view with HBS in the extoloph. B. Orienation and bifiurcation of the HSB in tangential aspect.
Fig. 5 in Diversity and evolution of Hunter-Schreger Band configuration in tooth enamel of perissodactyl mammals
Fig. 5. Transverse HSB configuration in Equoidea. A. Lower molar of Mesohippus sp. (KOE 1509); late Eocene–early Oligocene, Toadstool Park area, Nebraska, USA. The transverse HSB are to be seen in the tangential section. Note also the transversely oriented perikymata on the outer enamel surface. Both structures are independent from each other. B. Upper molar of Palaeotherium sp. (KOE 4050); upper Eocene, Frohnstetten, Germany; transverse HSB visible in the translucent enamel of the paracone from the outside.
Fig. 14 in Diversity and evolution of Hunter-Schreger Band configuration in tooth enamel of perissodactyl mammals
Fig. 14. Schematic diagram of the stratigraphic occurrence of the four configurations of Hunter−Schreger Bands (HSB) found in the various perissodactyl families. The range data of the families are taken from McKenna and Bell (1997). All four types occurred during the Paleogene in several families. The compound HSB configuration did not reach the Neogene. The three other types are represented by one family each in the extant fauna: the transverse HSB configuration in Equidae, the curved HSB configuration in Tapiridae, and the vertical HSB configuration in Rhinocerotidae.
Fig. 13 in Diversity and evolution of Hunter-Schreger Band configuration in tooth enamel of perissodactyl mammals
Fig. 13. Schematic hypothesis of the evolutionary interrelationship of the four configurations of Hunter−Schreger Bands (HSB) found in Perissodactyla. From the basal transverse HSB configuration evolved the curved HSB configuration on the one hand. On the other hand the compound HSB configuration evolved and gave rise to the vertical HSB configuration in Rhinocerotidae.
Model configuration files and forcing data for Implementing deep soil and dynamic root uptake in Noah-MP (v4.5): impact on Amazon dry-season transpiration
<p>This repository includes the model configuration files, input data, and forcing data used for simulations in Bieri et al. (2025) - <em>Implementing deep soil and dynamic root uptake in Noah-MP (v4.5): impact on Amazon dry-season transpiration.</em></p> <ul> <li>forcing.tar.gz - Compressed folder containing HRLDAS Noah-MP model forcing NetCDF files <ul> <li>These forcing files were derived from the NASA Global Land Data Assimilation System (GLDAS; Beaudoing et al. 2020)</li> <li>The compressed file contains 3-hourly forcing files for the entire simulation period (01 Jun 2000 to 31 Dec 2019)</li> </ul> </li> <li>wrfinput_d01 - NetCDF file used as HRLDAS input file in HRLDAS Noah-MP simulations <ul> <li>Generated from WRF WPS (https://github.com/wrf-model/WPS)</li> </ul> </li> <li>Namelist files <ul> <li>namelist.hrldas.ROOT - Model namelist settings used for ROOT experiment</li> <li>namelist.hrldas.SOIL - Model namelist settings used for SOIL experiment</li> <li>namelist.hrldas.GW - Model namelist settings used for GW experiment</li> <li>namelist.hrldas.CONTROL - Model namelist settings used for FD (CONTROL) experiment</li> </ul> </li> </ul>
Figure 8. Configuration of the controller-Designing a Growing Functional Modules "Artificial Brain"
<p>Before running the controller, it is necessary to specify the communication's configuration.<br> When pressing the “configure” button, two text windows appear (figure 8). The upper one allows to<br> specify the application's localization in order to run it previously to the controller. Presently, the<br> corresponding simulation will run on the same machine, thus the name of the corresponding<br> executable file must be specified. Otherwise, in the same field, the user should specify the IP<br> address of the server where the controlled system is running.</p>
Figure 7. Adding an Acting Module, its configuration values and its input connections-Designing a Growing Functional Modules "Artificial Brain"
<p>The fourth step consists of adding an Acting Module, its configuration values and input<br> connection as shown in figure 7. A type “CI” is assigned because it functionality will consist of<br> triggering a steering command in accordance with the perception from the Sensing Module and in<br> order to satisfy the input request from the Global Goal. Consequently, the feedback is set to “1 18”<br> where “1” is the reference to the Sensation “free” and “18” to the perception in output of the<br> Sensing Module. The identifier “18” for this perception is computed as at the total number of<br> Sensation plus one (first sensing module). Identifiers and their references are automatically updated<br> when a Sensation is added or deleted.</p>
Supplementary data for "Vacancy defect configurations in the metal-organic framework UiO-66: Energetics and electronic structure"
<p>Optimised structures for UiO-66 with various defect configurations in VASP POSCAR format. For naming see the associated paper (DOI:10.1039/c7ta11155j).</p>
Configurations and parameters for DMPC and DMTAP lipids and their mixtures
<p><strong>Configurations</strong> containing cationic (charge: +1) DMTAP and DMPC lipids, water and neutralizing ions (when necessary) at 50 C for the following systems:</p> <ol> <li>Pure DMPC: 128 lipids (all DMPC, 0 Cl ions) and 3655 waters. File: dmpc128_20ns.pdb</li> <li>6% DMTAP: 128 lipids (120 DMPC, 8 DMTAP, 8 Cl ions) and 3647 waters. File: tap06_20ns.pdb</li> <li>16% DMTAP: 128 lipids (108 DMPC, 20 DMTAP, 20 Cl ions) and 3635 waters</li> <li>25% DMTAP: 128 lipids (96 DMPC, 32 DMTAP, 32 Cl ions) and 3623 waters</li> <li>31% DMTAP: 128 lipids (88 DMPC, 40 DMTAP, 40 Cl ions) and 3615 waters</li> <li>39% DMTAP: 128 lipids (78 DMPC, 50 DMTAP, 50 Cl ions) and 3605 waters</li> <li>50% DMTAP: 128 lipids (64 DMPC, 64 DMTAP, 64 Cl ions) and 3591 waters</li> <li>63% DMTAP: 128 lipids (48 DMPC, 80 DMTAP, 80 Cl ions) and 3575 waters</li> <li>75% DMTAP: 128 lipids (32 DMPC, 96 DMTAP, 96 Cl ions) and 3559 waters</li> <li>89% DMTAP: 128 lipids (14 DMPC, 114 DMTAP, 114 Cl ions) and 3541 waters</li> <li>Pure DMTAP: 128 lipids (all DMTAP, 128 Cl ions) and 3527 waters: File: dmtap128_24ns.pdb</li> </ol> <p>Simulation time for each system is shown in the file name.</p> <p><strong>Parameter files are: </strong>dmpc.itp and dmtap.itp. The file lipid.itp is also needed (these are Berger lipids). Download lipid.itp from <a href="http://wcm.ucalgary.ca/tieleman/downloads">http://wcm.ucalgary.ca/tieleman/downloads</a></p> <p><strong>The PDF file</strong> (TablePDB.pdf ) contains a summary of the systems with area per lipid and error.</p> <p><strong>References:</strong></p> <ol> <li><a href="http://www.biophysj.org/cgi/content/abstract/86/6/3461">Cationic DMPC/DMTAP Lipid Bilayers: Molecular Dynamics Study</a>, Gurtovenko, Patra, Karttunen, Vattulainen, Biophys. J. 86, 3461-3472 (2004).</li> <li><a href="http://dx.doi.org/10.1021/jp053667m">Effect of Monovalent Salt on Cationic Lipid Membranes As Revealed by Molecular Dynamics Simulations</a>, A. A. Gurtovenko, M. Miettinen, M. Karttunen, and I. Vattulainen J. Phys. Chem. B 109, 21126-21134 (2005).</li> <li><a href="http://dx.doi.org/10.1021/jp810233q">Ion Dynamics in Cationic Lipid Bilayer Systems in Saline Solutions</a>, M.S. Miettinen, A.A. Gurtovenko, I. Vattulainen, and M. Karttunen, J. Phys. Chem. B 113, 9226-9234 (2009).</li> </ol> <p> </p> <p> </p>
A comparative study of experimental configurations in synchrotron pair distribution function
<p>Raw data for: Synchrotron X-ray pair distribution function analysis of tricalcium silicate pastes; doi: <a href="https://doi.org/10.3390/ma12081347">https://doi.org/10.3390/ma12081347</a></p> <p>The identification and quantification of amorphous components, and nanocrystalline phases with very small crystal sizes, smaller than ~3 nm, within samples containing crystalline phases is very challenging. However, this is important as there are several type of systems that contain these matrices: building materials, glass-ceramics, some alloys, etc. Total scattering synchrotron pair distribution function (PDF) can be used to characterize the local atomic order of the nanocrystalline components and to carry out quantitative analyses in complex mixtures. Although the resolution in momentum transfer space has been widely discussed, the resolution in the interatomic distance space has not been discussed to the best of our knowledge. Here, we report synchrotron PDF data collected at three beamlines in different experimental configurations and X-ray detectors. We not only discuss the effect of the resolution in Q-space, Q<sub>max ins</sub> of the recorded data and Q<sub>max</sub> of the processed data, but we also discuss the resolution in the interatomic distance (real) space. A thorough study for single phase crystalline nickel used as standard was carried out. Then, selected cement-related samples including anhydrous tricalcium and dicalcium silicates, and pastes derived from the hydration of tricalcium silicate and ye’elimite with bassanite were analyzed.</p>
Data from: Spatial configuration matters when removing windfelled trees to manage bark beetle disturbances in Central European forest landscapes
<p>The published dataset contains the result of the paper titled <strong>Spatial configuration matters when removing windfelled trees to manage bark beetle disturbances in Central European forest landscapes, in Journal of Environmental Management.</strong></p> <p>Two zip files contain maps in ascii format for the total bark beetle and wind damage over 54 simulation year in our study region in Slovakia under reference climate and different climate change scenarios. No- salvaging and 95% salvaging scenarios are shown, just as in the paper.</p> <p>Excel file contains data of the other figures in the paper (main text and appendices as well).</p> <p>See more details about target area, and iLand model:</p> <p>https://www.sciencedirect.com/science/article/pii/S0168192318302946</p> <p>http://iland.boku.ac.at/startpage</p> <p>contact: Laura Dobor; dobor.laura@gmail.com</p> <p> </p>
Text-fig. 4. Platanaceae 1–3. Macginitiea gracilis (LESQUEREUX) J. WOLFE et WEHR leaves and associated reproductive structures 1. Holotype of Aralia gracilis LESQUEREUX from Bridger Pass, Wyoming, USNM 330. 2. Specimen showing the typical configuration of five lobes, Killpecker Creek flora, Wyoming. UF 18126-13242. 3. Silicified M. gracilis leaf from Almont, North Dakota; arrow indicates adjacent Macginicarpa infructescence, UF 15722-29202a. 4. Macginicarpa infructescence from Almont, UF15722-35493. 5. Platananthus sp., Almont, UF 15722-62019. 6. Macginicarpa glabra MANCHESTER infructescence, enlarged from fig. 3, UF 15722-29202b. Specimens in figs 3-6 collected and donated by John Curtis. Scales = 1 cm. Images 3–6 light-dark inverted. in Revisions To Roland Brown'S North American Paleocene Flora
Text-fig. 4. Platanaceae 1–3. Macginitiea gracilis (LESQUEREUX) J. WOLFE et WEHR leaves and associated reproductive structures 1. Holotype of Aralia gracilis LESQUEREUX from Bridger Pass, Wyoming, USNM 330. 2. Specimen showing the typical configuration of five lobes, Killpecker Creek flora, Wyoming. UF 18126-13242. 3. Silicified M. gracilis leaf from Almont, North Dakota; arrow indicates adjacent Macginicarpa infructescence, UF 15722-29202a. 4. Macginicarpa infructescence from Almont, UF15722-35493. 5. Platananthus sp., Almont, UF 15722-62019. 6. Macginicarpa glabra MANCHESTER infructescence, enlarged from fig. 3, UF 15722-29202b. Specimens in figs 3-6 collected and donated by John Curtis. Scales = 1 cm. Images 3–6 light-dark inverted.
Fig. 1. Landmark configurations maped onto a hypothetical generalized henricosborniid. A in Early steps in the radiation of notoungulate mammals in southern South America: A new henricosborniid from the Eocene of Patagonia
Fig. 1. Landmark configurations maped onto a hypothetical generalized henricosborniid. A. Upper molar: 1, metastyle; 2, metacone; 3, paracone; 4, parastyle; 5, protocone; 6, hypocone; 7, distolingual end of crochet; 8, mesiolabial end of crochet. B. Lower molar: 1, labial end of paralophid; 2, labial end of metalophid; 3, lingual end of metalophid; 4, mesial end of cristid obliqua; 5, hypoconulid; 6, entoconid/lingual end of entolophid.
Fig. 2 in Evidence for a sauropod-like metacarpal configuration in stegosaurian dinosaurs
Fig. 2. Correctly articulated (vertically oriented, based on the results of this study) right manual skeleton of the stegosaur Stegosaurus sulcatus, from the Upper Jurassic of Wyoming, USA USNM 4937, shown in four oblique views with (A–D, I) and without (E–H, J) carpals, and with each metacarpal shown individually in lateral view with its associated phalanx or phalanges correctly articulated (K–N). Roman numerals refer to digit number.
Fig. 1 in Evidence for a sauropod-like metacarpal configuration in stegosaurian dinosaurs
Fig. 1. Manual skeletal configuration in stegosaurs and other dinosaurs. A. Cladogram of Dinosauria with proximal views of metacarpals, showing convergent evolution of tightly curved metacarpal arc in Sauropoda and Thyreophora; Herrerasaurus after Sereno (1993), sauropods after Bonnan (2003), Camptosaurus after Carpenter and Wilson (2008), and Peloroplites after Carpenter et al. (2008). B. Articulated manus of the sauropod Camarasaurus lentus, CM 11338 (after Gilmore 1925). C. Articulated manus of the stegosaur Stegosaurus armatus, USNM 4934 (right, after Gilmore 1914) as found in situ, showing that the metacarpals form a vertical tube (C. lentus) or semi−tube (S. armatus). D. Articulated metacarpals of the stegosaur Kentrosaurus aethiopicus in proximal view (modified from Hennig 1925). E. Previous, incorrect reconstruction of the manus of USNM 4937 (Gilmore 1914), a stegosaur of indeterminate genus and species (Maidment et al. 2008), in cranial view, showing unnatural gap between carpals (arrow) (likely Stegosaurus sulcatus, Upper Jurassic, USA; see text). F. Previous, incorrect reconstruction of the manus of USNM 4937 (Gilmore 1914) in proximal view, showing unnatural gaps between metacarpals (arrows). G. Incorrectly articulated right hand of the stegosaur USNM 4937 viewed from above. H. Incorrectly articulated right hand of the stegosaur USNM 4937 viewed from obliquely behind and to the left. I. Cranial view of mounted right forelimb of Stegosaurus armatus AMNH 650, showing distal contact between radius and ulna; carpus and manus are cast from a different specimen. Scale bar applies to photographs only; line illustrations not to scale. Roman numerals refer to digit number.
Fig. 2 in Evidence for a Sauropod-Like Metacarpal Configuration in Ankylosaurian Dinosaurs
Fig. 2. Proximal view of left metacarpals of the ankylosaur Peloroplites cedrimontanus from Cedar Mountain Formation, Utah, USA; with digit I to the right, incorrectly configured in a shallow arc (A) and correctly configured in a semicircle (B). Note the presence of gaps (arrows) between the metacarpals in A and their closure in B.
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Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
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