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86 results for “cytochrome b”
Figure 1 in Molecular relationships of the Israeli shrews (Eulipotyphla: Soricidae) based on cytochrome b sequences
Figure 1: Shrew sample locations. A. samples sequenced in this work. B. shrew specimen present in the Steinhardt National Collection of Natural History, Zoological Museum at Tel Aviv University (Israel). The two major biomes of Israel: the Mediterranean biome, and the desert, are indicated in green and yellow, respectively. Red squares, blues stars, green circles and black triangles indicate C. ramona, S. etruscus, C. suaveolens gueldenstaedtii and C. leucodon specimen respectively. The museum records encompass 79 C. leucodon, 594 C. suaveolens gueldenstaedtii, 13 C. ramona and 443 S. etruscus.
FIG. 4. Haplotype network for the mitochondrial genes cytochrome b in Phylogeography of the Chocó Endemic Rainbow Characin (Teleostei: Rhoadsia)
FIG. 4. Haplotype network for the mitochondrial genes cytochrome b (Cyt-b, top) and cytochrome oxidase I (COI, bottom) color coded by site. The size of the circles is proportional to the haplotype frequency. The number of mutations between the haplotypes are represented by hatch marks. The populations within drainages are represented by different color shades (see legend). Haplotypes fall into two groups: the northern (N, enclosed by blue dashed line) and the southern group (S, enclosed by red dashed line).
Figure 3 Bayesian inference tree reconstructed from cytochrome b in Fossorial morphotype does not make a species in water voles
Figure 3 Bayesian inference tree reconstructed from cytochrome b sequences of water vole ArVicola. The tree is rooted with 11 species of Arvicolinae: MicrotUS aGreStiS, M. cabrerae, M. SUbterraneUS, M. lUSitanicUS, M. dUodecimcoStatUS, M. arValiS, Neodon irene, N. leUcUrUS, ChionomYS niValiS, C. roberti, and C. GUd. The branching pattern and branch lengths follow the Bayesian analysis, whereas the first and second numbers on the branches correspond to posterior probability values and bootstrap support in the maximum likelihood tree analyses, respectively. Symbols for morphotypes (∆ – fossorial; □ – aquatic) correspond to those in Figure 1 and Table 1.
FIGURE 1. Cytochrome-b in Incipient speciation in allopatric Etheostoma rupestre (Percidae: Etheostomatinae) lineages, with the description of three new subspecies
FIGURE 1. Cytochrome-b phylogeny (modified from Janosik et al. [2023] with permission from Springer Nature Publishing Company; subject to associated copyright policy) displaying the three allopatric lineages of Etheostoma rupestre. Bayesian posterior probabilities are displayed on the nodes. EU296687.1 is a GenBank individual from Piller et al. (2008). Individuals that did not sort into the three major clades may indicate incomplete lineage sorting or recent gene exchange between lineages.
Figure 2 from: Grzywacz B, Tatsuta H (2017) Phylogenetic relationship of Japanese Podismini species (Orthoptera: Acrididae: Melanoplinae) inferred from a partial sequence of cytochrome c oxidase subunit I gene. Journal of Orthoptera Research 26: 11-19. https://doi.org/10.3897/jor.26.14547
Figure 2 - Phylogenetic tree of Podismini based on the Bayesian analysis (BI) of concatenated COI sequences. BI posterior probability (PP) and maximum likelihood bootstrap values (BV) are shown near resolved branches (only support values above 50% are shown) as PP/BV. The respective clades are marked with a square and Roman numeral. We examined Ognevia longipennis from China because of the availability and thus did not treat this specimen as Japanese Podismini (see also text). Light green frames denote the Japanese Podismini analyzed in the present study.
Figure 2 from: Grzywacz B, Tatsuta H (2017) Phylogenetic relationship of Japanese Podismini species (Orthoptera: Acrididae: Melanoplinae) inferred from a partial sequence of cytochrome c oxidase subunit I gene. Journal of Orthoptera Research 26: 11-19. https://doi.org/10.3897/jor.26.14547
Figure 2 - Phylogenetic tree of Podismini based on the Bayesian analysis (BI) of concatenated COI sequences. BI posterior probability (PP) and maximum likelihood bootstrap values (BV) are shown near resolved branches (only support values above 50% are shown) as PP/BV. The respective clades are marked with a square and Roman numeral. We examined Ognevia longipennis from China because of the availability and thus did not treat this specimen as Japanese Podismini (see also text). Light green frames denote the Japanese Podismini analyzed in the present study.
Figure 3. Bayesian dating tree inference performed with cytochrome b in PhylOgeOgraphy and pOtential distributiOn OF Sturnira lilium and S. giannae (ChirOptera: PhyllOstOmidae) With range eXtensiOn FOr S. giannae in the CerradO and Pantanal biOmes
Figure 3. Bayesian dating tree inference performed with cytochrome b gene for Sturnira. Numbers are the nodes ages and values of posterior probability are represented by circles in black (pp ≥ 0.9) and white (pp ≥ 0.8 <0.9). See the list of haplotypes in Table S1 and Fig. S1.
Figure 2 in Molecular systematics of the genus Pseudocerastes (Ophidia: Viperidae) based on the mitochondrial cytochrome b gene
Figure 2. Maximum parsimony strict consensus tree of the 2 most parsimonious trees recovered in the analysis. Eristicophis macmahonii was used as an outgroup taxon for rooting the tree. The phylogenetic tree produced by NJ has the same topology as the presented tree with regard to the major lineages. Numbers above branches on the right side of slashes are bootstrap percentages (8000 replicates) for MP and on the left side are bootstrap percentages (6000 replicates) for NJ.
Figure 1 in Molecular systematics of the genus Pseudocerastes (Ophidia: Viperidae) based on the mitochondrial cytochrome b gene
Figure 1. Map showing the localities of collected Iranian specimens used in the study. Solid circle for the western specimens of P. urarachnoides (KF314714–16) and P. persicus (KF314707–10); solid square for the only specimen from the northern populations of P. persicus (KF314705); solid octagon for the only specimen of the central populations of P. persicus (KF314706); and solid triangle for specimens of the southern populations (KF314711–13).
Fig. 2 in Variation in the Karyotype, Cytochrome b Gene, and 5S rDNA of Four Thunnus (Perciformes, Scombridae) Tunas
Fig. 2. Karyotypes of (a) Thunnus obesus, (b) T. albacares, (c) T. alalunga, and (d) T. orientalis.
Figure 3. Bayesian phylogram for cytochrome b sequences. Upper Sacramento River basin haplotypes are distributed among clades A–D in Extensive diversification of pebblesnails (Lithoglyphidae: Fluminicola) in the upper Sacramento River basin, northwestern USA
Figure 3. Bayesian phylogram for cytochrome b sequences. Upper Sacramento River basin haplotypes are distributed among clades A–D. Posterior probability values ≥ 90% are shown. Upper Sacramento River basin lineages newly discovered in this study are highlighted by the larger font. Specimen codes are from Table 1.
Figure 3 from: Md Zain B, Muhammad Abu Bakar A, Ruslin F, vui fui v, Abu M, Japning J, Abdul-Patah p, lakim m, Roos C, Yaakop S (2014) Phylogenetic relationships of Malaysia's long-tailed macaques, Macaca fascicularis, based on cytochrome b sequences. ZooKeys 407: 121-139. https://doi.org/10.3897/zookeys.407.6982
Figure 3 - Neighbor joining phylogenetic tree using Kimura-2-Parameter algorithm with bootstrap values indicated on the branch.
Figure 1 from: Md Zain B, Muhammad Abu Bakar A, Ruslin F, vui fui v, Abu M, Japning J, Abdul-Patah p, lakim m, Roos C, Yaakop S (2014) Phylogenetic relationships of Malaysia's long-tailed macaques, Macaca fascicularis, based on cytochrome b sequences. ZooKeys 407: 121-139. https://doi.org/10.3897/zookeys.407.6982
Figure 1 - Distribution of the long-tailed macaque (Macaca fascicularis) in Southeast Asia (Gumert et al. 2011).
Figure 4 from: Md Zain B, Muhammad Abu Bakar A, Ruslin F, vui fui v, Abu M, Japning J, Abdul-Patah p, lakim m, Roos C, Yaakop S (2014) Phylogenetic relationships of Malaysia's long-tailed macaques, Macaca fascicularis, based on cytochrome b sequences. ZooKeys 407: 121-139. https://doi.org/10.3897/zookeys.407.6982
Figure 4 - The Bootstrap 50% majority rule consensus maximum parsimony tree of Macaca fascicularis populations. Bootstrap values are indicated on the branch.
Figure 5 from: Md Zain B, Muhammad Abu Bakar A, Ruslin F, vui fui v, Abu M, Japning J, Abdul-Patah p, lakim m, Roos C, Yaakop S (2014) Phylogenetic relationships of Malaysia's long-tailed macaques, Macaca fascicularis, based on cytochrome b sequences. ZooKeys 407: 121-139. https://doi.org/10.3897/zookeys.407.6982
Figure 5 - Bayesian inference of the 50% majority rule consensus tree of Cyt b sequence of Macaca fascicularis populations with Bayesian posterior probability (PP) are accordingly indicated on the branch.
Figure 1 from: Che Lah EF, Yaakop S, Ahamad M, Md Nor S (2015) Molecular identification of blood meal sources of ticks (Acari, Ixodidae) using cytochrome b gene as a genetic marker. ZooKeys 478: 27-43. https://doi.org/10.3897/zookeys.478.8037
Figure 1 - Map of the study sites in Peninsular Malaysia: 1 Hulu Langat, Selangor 2 Labu, Negeri Sembilan 3 Janda Baik, Pahang 4 Gunung Tebu, Terengganu.
Figure 4 from: Che Lah EF, Yaakop S, Ahamad M, Md Nor S (2015) Molecular identification of blood meal sources of ticks (Acari, Ixodidae) using cytochrome b gene as a genetic marker. ZooKeys 478: 27-43. https://doi.org/10.3897/zookeys.478.8037
Figure 4 - Maximum parsimony tree constructed from 28 sequences (including one outgroup sequence) of the Cyt b gene. The numbers at the branches stand for bootstrap values 70% and above of 1000 replications. Genera of ticks represented by blue for Ixodes sp., orange for Dermacentor sp., violet for Haemaphysalis sp. and green for Amblyomma sp.
Figure 3 from: Che Lah EF, Yaakop S, Ahamad M, Md Nor S (2015) Molecular identification of blood meal sources of ticks (Acari, Ixodidae) using cytochrome b gene as a genetic marker. ZooKeys 478: 27-43. https://doi.org/10.3897/zookeys.478.8037
Figure 3 - Neighbor-joining tree constructed from 28 sequences (including one outgroup sequence) of the Cyt b gene. The numbers at the branches stand for bootstrap values 70% and above of 1000 replications. Genera of ticks represented by blue for Ixodes sp., orange for Dermacentor sp., violet for Haemaphysalis sp. and green for Amblyomma sp.
Figure 2 from: Che Lah EF, Yaakop S, Ahamad M, Md Nor S (2015) Molecular identification of blood meal sources of ticks (Acari, Ixodidae) using cytochrome b gene as a genetic marker. ZooKeys 478: 27-43. https://doi.org/10.3897/zookeys.478.8037
Figure 2 - Amplification of Cyt b gene produced 623 bp of PCR products from ticks species. Lane 1: unfed ticks (negative control); Lane 2: vertebrate DNA (positive control); Lanes 3–8: DNA of field-collected ticks (Ixodes sp., Dermacentor sp., Amblyomma sp., Amblyomma testudinarium, Haemaphysalis sp., Haemaphysalis sp.,) and Lanes M1, M2: 100 bp DNA ladder (Bioron, Germany).
Figure 1 from: Grzywacz B, Tatsuta H (2017) Phylogenetic relationship of Japanese Podismini species (Orthoptera: Acrididae: Melanoplinae) inferred from a partial sequence of cytochrome c oxidase subunit I gene. Journal of Orthoptera Research 26: 11-19. https://doi.org/10.3897/jor.26.14547
Figure 1 - A map of Japan with the distribution of nine genera of Japanese Podismini.
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