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Dataset results
138 results for “dynamic mapping”
Dataset (X) related to publication: Decisive Role of Water and Protein Dynamics in Residence Time of p38a MAP Kinase Inhibitors
<p>Well-tempered metadynamics simulation data of compounds <strong>1 </strong>and<strong> 2</strong> of the related to the publication Pantsar et al.: <em>Decisive Role of Water and Protein Dynamics in Residence Time of p38a MAP Kinase Inhibitors.</em></p> <p>Individual .zip files contain raw-desmond trajectories (-out.cms files and trj-files).</p> <p>All datasets related to this publication:</p> <p><a href="https://doi.org/10.5281/zenodo.4568113">https://doi.org/10.5281/zenodo.4568113</a>(compound <strong>1</strong>; dataset: I)</p> <p><a href="https://doi.org/10.5281/zenodo.4572444">https://doi.org/10.5281/zenodo.4572444</a> (compound <strong>1</strong>; dataset: II)</p> <p><a href="https://doi.org/10.5281/zenodo.4561797">https://doi.org/10.5281/zenodo.4561797</a>(compound <strong>2</strong>; dataset: III)</p> <p><a href="https://doi.org/10.5281/zenodo.4563896">https://doi.org/10.5281/zenodo.4563896</a> (compound <strong>2</strong>; dataset: IV)</p> <p><a href="https://doi.org/10.5281/zenodo.5563359">https://doi.org/10.5281/zenodo.5563359</a> (<strong>SB203580</strong>; dataset: V)</p> <p><a href="https://doi.org/10.5281/zenodo.5563655">https://doi.org/10.5281/zenodo.5563655</a> (<strong>SB203580</strong>; dataset: VI)</p> <p><a href="https://doi.org/10.5281/zenodo.5564118%20">https://doi.org/10.5281/zenodo.5564118 </a>(compound <strong>1</strong> simulated in compound <strong>2</strong> metastable state <strong>2-<em>S</em><sub>3</sub></strong>; dataset: VII)</p> <p><a href="https://doi.org/10.5281/zenodo.5564208%20">https://doi.org/10.5281/zenodo.5564208 </a>(compound <strong>1</strong> simulated in compound <strong>2</strong> metastable state <strong>2-<em>S</em><sub>3</sub></strong>; dataset: VIII)</p> <p><a href="https://doi.org/10.5281/zenodo.5564586">https://doi.org/10.5281/zenodo.5564586</a> (well-tempered metadynamics simulations of compounds <strong>1</strong> and <strong>2</strong>; dataset: IX)</p> <p><a href="https://doi.org/10.5281/zenodo.5570882">https://doi.org/10.5281/zenodo.5570882</a> (well-tempered metadynamics simulations of compounds <strong>1</strong> and <strong>2</strong>; dataset: X)</p> <p><a href="https://doi.org/10.5281/zenodo.5571352">https://doi.org/10.5281/zenodo.5571352</a> (well-tempered metadynamics simulations of compounds <strong>1</strong> and <strong>2</strong>; dataset: XI)</p> <p>The datasets include original Desmond raw-trajectories (datasets I–VIII), PDB-coordinates for the energy minimized metastable state derived structures (datasets II, IV and VI) and raw-trajectories of the well-tempered metadynamics simulations (dataset IX–XI).</p>
Direct mapping of curve-crossing dynamics in IBr by attosecond transient absorption spectroscopy
Open the record for dataset details and reuse information.
Integrative Single-cell Transcriptomics and Single-cell Epigenomics Mapping the Developmental Dynamics of Fetal Retina
GEO Series GSE228370. Homo sapiens. 22 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
A single-cell map of maternal and zygotic mRNA dynamics during cell-type specification in zebrafish embryos [SLAM-seq]
GEO Series GSE224113. Danio rerio. 4 samples. Type: Expression profiling by high throughput sequencing; Other.
Mapping and dynamics of regulatory DNA in A. thaliana tissues and cell types across developmental transitions
GEO Series GSE53324. Arabidopsis thaliana. 17 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Mapping Transcription Factor Nucleosome Dynamics in Plasma
GEO Series GSE171434. Homo sapiens. 25 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Mapping and dynamics of regulatory DNA and transcription factor networks in A. thaliana
GEO Series GSE53322. Arabidopsis thaliana. 20 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide Mapping of Lamin B1 Reveals the Existence of Dynamic and Functional Euchromatin Lamin B1 Domains (eLADs) at the onset of the Epithelial to Mesenchymal Transition
GEO Series GSE96033. Mus musculus. 27 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Mapping and analysis of chromatin state dynamics in nine human cell types (ChIP-Seq)
GEO Series GSE26320. Homo sapiens. 180 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
RNA-sequencing for dynamic epi-transcriptomic landscape mapping with disease progression in ER-positive breast cancer
GEO Series GSE176534. Homo sapiens. 9 samples. Type: Expression profiling by high throughput sequencing.
A dynamic co-expression map of early inflorescence development in Setaria viridis provides a resource for gene discovery and comparative genomics
GEO Series GSE118673. Setaria viridis. 23 samples. Type: Expression profiling by high throughput sequencing.
A single-cell map of dynamic chromatin landscapes of immune cells in renal cell carcinoma
GEO Series GSE181064. Homo sapiens. 64 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Transcriptomic RNA structure mapping unveils the structure dynamic induced by DHX36 binding (RBNS)
GEO Series GSE237159. synthetic construct. 11 samples. Type: Other.
A single-cell map of maternal and zygotic mRNA dynamics during cell-type specification in zebrafish embryos [scSLAM-seq]
GEO Series GSE224918. Danio rerio. 10 samples. Type: Expression profiling by high throughput sequencing; Other.
Base-resolution maps of 5-formylcytosine and 5-carboxylcytosine reveal genome-wide DNA demethylation dynamics
GEO Series GSE56429. Mus musculus. 8 samples. Type: Methylation profiling by high throughput sequencing.
Single cell mapping of breast tumor stroma reveals dynamically evolving compositions of cancer-associated fibroblasts along tumor progression
GEO Series GSE149636. Mus musculus. 57 samples. Type: Expression profiling by high throughput sequencing.
High-resolution mapping reveals a conserved, widespread, dynamic meiotically regulated mRNA methylation program [Mm]
GEO Series GSE55575. Mus musculus. 26 samples. Type: Other.
Chromatin mapping and single-cell immune profiling defines the temporal dynamics of ibrutinib drug response in chronic lymphocytic leukemia [scRNA-seq]
GEO Series GSE111014. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
Transcriptome-wide mapping reveals widespread dynamic regulated pseudouridylation of mRNA
GEO Series GSE60047. Homo sapiens; Mus musculus; Saccharomyces cerevisiae; Candida albicans. 86 samples. Type: Expression profiling by high throughput sequencing.
RNA tertiary structure and conformational dynamics revealed by BASH MaP
GEO Series GSE271825. synthetic construct; Homo sapiens. 26 samples. Type: Other.
ScienceDex guides
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.