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104
datasets available to search
ShareScore release 0.9.0
Dataset results
104 results for “functional annotation”
Massively parallel reporter assays with multi-layer annotation identified cell-type-specific functional variants and genes associated with melanoma (MPRA)
GEO Series GSE210354. Homo sapiens. 16 samples. Type: Other.
Function annotation and clinical implications of KIT mutation and overexpression associated microRNAs in gastrointestinal stromal tumours
GEO Series GSE73346. Homo sapiens. 10 samples. Type: Non-coding RNA profiling by array.
Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility
GEO Series GSE158430. Bos taurus; Gallus gallus; Sus scrofa. 334 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (H3K27me3 ChIP-Seq)
GEO Series GSE158419. Bos taurus; Gallus gallus; Sus scrofa. 48 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ICE-A: A chromatin interaction-based tool for improved annotation of distal cis-regulatory elements reveals novel regulatory functions of lineage-restricted transcription factors in lymphocytic develo
GEO Series GSE279961. Mus musculus. 2 samples. Type: Other.
Derivation and functional annotation of human hematopoietic subpopulations from single-cell DNA methylation data
GEO Series GSE106957. Homo sapiens. 233 samples. Type: Methylation profiling by high throughput sequencing.
Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (H3K27ac ChIP-Seq)
GEO Series GSE158418. Bos taurus; Sus scrofa; Gallus gallus. 48 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Epigenome editing strategies for the functional annotation of topological insulators
GEO Series GSE121998. Homo sapiens. 74 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing.
Annotation and functional clustering of circRNA expression in rhesus macaque brain during aging
GEO Series GSE94027. Macaca mulatta. 32 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Functional annotation of genetic variants using locally haploid human pluripotent stem cells
GEO Series GSE233683. Homo sapiens. 63 samples. Type: Other.
Functional Annotation of Colon Cancer Risk SNPs
GEO Series GSE52429. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing.
Integrated Chromatin Accessibility Mapping and Expression Profiling Enables Functional Annotation of Kidney GWAS Loci
GEO Series GSE115961. Homo sapiens. 18 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Cisplatin-induced decrease of mRNA length reveals functional and translated intronic-polyadenylation isoforms in the annotated 5’-untranslated region of genes
GEO Series GSE180930. Homo sapiens. 33 samples. Type: Expression profiling by high throughput sequencing; Other.
Functional annotation of genes differentially expressed between primary motor and prefrontal association cortices of macaque brain
GEO Series GSE37997. Macaca mulatta. 8 samples. Type: Expression profiling by array.
Derivation and functional annotation of hematopoietic subpopulations from single-cell DNA methylation data
GEO Series GSE89545. Mus musculus. 219 samples. Type: Methylation profiling by high throughput sequencing.
Analysis of the miR-34 family functions in breast cancer reveals annotation error of miR-34b
GEO Series GSE98601. Homo sapiens. 12 samples. Type: Expression profiling by array.
Annotation and functional characterization of long noncoding RNAs deregulated in pancreatic adenocarcinoma
GEO Series GSE130688. Homo sapiens. 30 samples. Type: Expression profiling by high throughput sequencing.
MiRLog and dbmiR: prioritization and functional annotation tools to study human microRNA sequence variants
<p>dbmiR is a comprehensive database for functional annotation of miRNA SNVs (Single Nucleotide Variants). It includes a precompiled list of all possible miRNA allelic SNVs, providing their biological annotations at nucleotide and miRNA levels. In dbmiR we also integrated MiRLog, a new meta-predictor we implemented to predict the functional effect of miRNA SNVs.</p> <p>dbmiR can be used only for non-commercial purposes because of the licenses associated with some of the included tools and databases.</p>
Massively parallel reporter assays with multi-layer annotation identified cell-type-specific functional variants and genes associated with melanoma (RNA-Seq)
GEO Series GSE210355. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Massively parallel reporter assays with multi-layer annotation identified cell-type-specific functional variants and genes associated with melanoma
GEO Series GSE210356. Homo sapiens. 22 samples. Type: Expression profiling by high throughput sequencing; Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.