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Dataset results
79 results for “genetic barcoding”
Data from: Genetic barcoding of dark-spored myxomycetes (Amoebozoa)—Identification, evaluation and application of a sequence similarity threshold for species differentiation in NGS studies
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CellTag Indexing: genetic barcode-based sample multiplexing for single-cell genomics
GEO Series GSE130065. Mus musculus; Homo sapiens. 5 samples. Type: Expression profiling by high throughput sequencing.
Identifying non-genetic determinants of malignant clonal fitness at single cell resolution (primary leukaemia barcode-seq)
GEO Series GSE161657. Mus musculus; synthetic construct. 14 samples. Type: Other.
Multiplexing droplet-based single cell RNA-sequencing using genetic barcodes
GEO Series GSE96583. Homo sapiens. 5 samples. Type: Expression profiling by high throughput sequencing.
Identifying non-genetic determinants of malignant clonal fitness at single cell resolution (retransplant barcode-seq)
GEO Series GSE161669. Mus musculus. 10 samples. Type: Other.
Identifying non-genetic determinants of malignant clonal fitness at single cell resolution (NSG vs. BL6 barcode-seq)
GEO Series GSE161662. Mus musculus. 13 samples. Type: Other.
Identifying non-genetic determinants of malignant clonal fitness at single cell resolution [cell of origin barcode-seq]
GEO Series GSE186303. Mus musculus. 96 samples. Type: Other.
Identifying non-genetic determinants of malignant clonal fitness at single cell resolution (clonal competition barcode-seq)
GEO Series GSE161672. Mus musculus. 39 samples. Type: Other.
Gain-of-function genetic perturbationssimultaneouslyacross500 barcoded cancer cell lines
GEO Series GSE238126. Homo sapiens. 66 samples. Type: Other.
Deciphering Precursor Cell Dynamics in Esophageal Preneoplasia via Genetic Barcoding and Single-Cell Transcriptomics
GEO Series GSE289049. Mus musculus. 3 samples. Type: Expression profiling by high throughput sequencing.
Highly multiplexed and quantitative cell surface protein profiling using genetically barcoded antibodies
GEO Series GSE102712. Homo sapiens. 207 samples. Type: Other.
Identifying non-genetic determinants of malignant clonal fitness at single cell resolution [chemo barcode-seq]
GEO Series GSE186304. Mus musculus. 66 samples. Type: Other.
Deciphering Precursor Cell Dynamics in Esophageal Preneoplasia via Genetic Barcoding and Single-Cell Transcriptomics
GEO Series GSE304762. Mus musculus. 2 samples. Type: Other.
SSN-seq: Multiplexed single-cell transcriptomic profiling via genetic barcoding with shielded small nucleotides
GEO Series GSE201647. Homo sapiens; Mus musculus. 15 samples. Type: Expression profiling by high throughput sequencing; Other.
Early clonal extinction in glioblastoma progression revealed by genetic barcoding
GEO Series GSE189605. Mus musculus. 26 samples. Type: Expression profiling by high throughput sequencing.
Figure 4 in DNA Barcodes Reveal High Genetic Diversity in Philippine Fruit Bats
Figure 4. Sub-tree of the M. minimus / M. sobrinus clade from Figure 3 showing the Philippine clade (red line) and Southeast Asian clade (black line). Scale indicates five nucleotides substitutions per 1000 nucleotides.
Fig. 2 ITS phylogeny and genetic distances from the 13 in DNA barcoding of brown Parmeliae (Parmeliaceae) species: a molecular approach for accurate specimen identification, emphasizing species in Greenland
Fig. 2 ITS phylogeny and genetic distances from the 13 brown Pakmeliae species occurring in Greenland. a Cartoon representation of the maximum likelihood ITS topology obtained from 372 brown Pakmeliae specimens. Values at each node indicate non-parametric bootstrap support; only support values>50% are shown (complete ITS topology is shown in Supplementary Figure, S1). b Box plots of ITS genetic distances estimated for each species and all interspecific distances. 'CO' =Cetkakiella commixta; 'AG' =Melaielia agiata; 'HE' = M. hepatizoi; 'ST' = M. stygia; 'EL' = Melaiohalea elegaitula; 'EX' = M. exaspekatula; 'IN' = M. iifumata; 'OL' =M. olivacea; 'SE' =M. septeitkioialis; 'DI' =Moitaielia disjuicta; 'PA' = M.
Figure 1 in DNA Barcodes Reveal High Genetic Diversity in Philippine Fruit Bats
Figure 1. Map showing the collection sites of specimens in this study.
Re-evaluating the genetic variation of the COI gene of Insecta: Implications for DNA barcoding, metabarcoding and species delimitation studies
<p>To analyze the genetic variation of the <i>cytochrome c oxidase subunit I</i> (<i>COI</i>) gene of Insecta, the <i>COI</i> data of Insecta was downloaded from GenBank and the intraspecific Kimura-2 -parameter (K2P) distance of 40,782 species was calculated (each species with three or more sequences). Our result indicated that the maximum intraspecific genetic distance of 8,928 (21.89%) species was over 3%. Using a threshold of 3% in the clustering analysis, 7,123 (17.47%) species can be divided into two or more clusters. We also analyzed 3,189 genera with over three species (25,283 species) and found that the optimal thresholds for these genera ranged from 0.1%-15.7% (average value: 0.03531, median value: 0.02900). In clustering analysis, if the threshold values were set to 0.01, 0.02, 0.022, and 0.03, the numbers of clusters were 39,860, 31,024, 29,954, and 26,527, respectively. In metabarcoding studies, a threshold of 0.03 was recommended to estimate the species diversity of insects in a certain environment. However, using the empirical thresholds mentioned above for operational taxonomic unit (OTU) picking, the average match ratios of the 3,189 genera were 0.5137, 0.6338, 0.6440, and 0.6587. By contrast, if the possible thresholds from the distance matrix, the minimum interspecific genetic distance of congeneric species, and the optimal thresholds were used in clustering analysis, the average match ratios of them were 0.6626 0.7530, and 0.7549. Herein, we recommended the utilizations of the minimum interspecific genetic distance (when it was greater than or equal to 2%) and the optimal thresholds for OTU picking in DNA barcoding and species delimitation studies based on the <i>COI</i> gene of insects.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.