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70 results for “haplotype networks”
FIGURE 5. Haplotype network for Austroniscus brandtae n in Combining morphological and mitochondrial DNA data to describe a new species of Austroniscus Vanhöffen, 1914 (Isopoda, Janiroidea, Nannoniscidae) linking abyssal and hadal depths of the Puerto Rico Trench
FIGURE 5. Haplotype network for Austroniscus brandtae n. sp. for the mitochondrial ribosomal large subunit 16S. Sampled haplotypes are shown as solid circles with circle area proportional to the number of individuals possessing that haplotype; black circles represent unsampled haplotypes required to connect the network. The number of mutational steps between haplotypes are shown along connecting lines. The colours represent sampling locations as indicated in the legend.
FIGURE 4. Haplotype network for Austroniscus brandtae n in Combining morphological and mitochondrial DNA data to describe a new species of Austroniscus Vanhöffen, 1914 (Isopoda, Janiroidea, Nannoniscidae) linking abyssal and hadal depths of the Puerto Rico Trench
FIGURE 4. Haplotype network for Austroniscus brandtae n. sp. for COI (cytochrome c oxidase subunit I). Sampled haplotypes are shown as solid circles with circle area proportional to the number of individuals possessing that haplotype; black circles represent unsampled haplotypes required to connect the network. The number of mutational steps between haplotypes are shown along connecting lines. The colours represent sampling locations as indicated in the legend.
Data from: PopART: full-feature software for haplotype network construction
Open the record for dataset details and reuse information.
Figure 2. CAD haplotype network. TCS Network based off 814 in Low Variation in Nuclear and Mitochondrial DNA Inhibits Resolution of Invasion Pathways across the Pacific for the Coconut Rhinoceros Beetle (Scarabeidae: Oryctes rhinoceros)
Figure 2. CAD haplotype network. TCS Network based off 814 base pairs of the CAD gene region from a total of 117 samples (8 to 39 from any given location) representing 234 total haplotypes. Hash marks represent a single base pair change. A PHASE algorithm was used to generate haplotypes from ambiguities present in the sequence data of a multi-copy nuclear gene, resulting in twice as many haplotypes as samples.
Enhancer histone-QTLs are enriched on autoimmune risk haplotypes and influence gene expression within chromatin networks.
GEO Series GSE116193. Homo sapiens. 112 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Fig. 14 in NGS-barcodes, haplotype networks combined to external morphology help to identify new species in the mangrove genus Ngirhaphium Evenhuis & Grootaert, 2002 (Diptera: Dolichopodidae: Rhaphiinae) in Southeast Asia
Fig. 14. Maximum likelihood tree of Ngirhaphium based on NGS barcodes (COI, 313bp).
Fig. 5 a 95 in Using haplotype networks, estimation of gene flow and phenotypic characters to understand species delimitation in fungi of a predominantly Antarctic Usnea group (Ascomycota, Parmeliaceae)
Fig. 5 a 95% probability haplotype network for the U. sphacelata group based on a combined dataset of ribosomal IGS and ITS and protein-coding RPB1 sequences. The 3-step nesting level is shown. Haplotypes are represented by colored circles according to the sample localities. The circle size is proportional to the number of sequences sharing a haplotype, except for haplotype H5 comprising too many
Fig. 7 Haplotype network for 20 in New insights into the phylogeny and taxonomy of Chinese species of Gagea (Liliaceae)-speciation through hybridization
Fig. 7 Haplotype network for 20 cpDNA haplotypes (psbA- trnH IGS+trnL-trnF IGS) including 33 sequences of representatives of Gagea sect. Minimae: G. confusa (con), G. davlianidzeae (dav), G. filiformis (fil), G. granulosa (gran), G. minima (min), and G. nigra (nig, for further details, see Appendix 1 and Table 2). Circle size corresponds to the number of taxa possessing the haplotype. Empty circles refer to missing intermediates not found in the analyzed sequences
Fig. 3 Haplotype network derived from the Cpunl-1 in Genetic and morphological divergence among Gravel Bank Grasshoppers, Chorthippus pullus (Acrididae), from contrasting environments
Fig. 3 Haplotype network derived from the Cpunl-1 data set; alleles coded as in Table 2. Pie diameters proportional to number of individuals carrying that particular haplotype (see inlet at bottom right); numbers next to pies or pie slices indicate how many individuals carried that particular haplotype. Shading of pies and slices (see inlet at top right) reflects frac- tions of haplotypes contributed by the different populations; Bavarian and eastern German (Brandenburg + Saxony) populations presented as two pools based on pairwise FST values (no significant differentiation detected within either region). Solid dots represent missing haplotypes; dashed lines indicate that multiple connections among haplotypes are possible but not favored
Fig. 8 The haplotype network for Ceratozamia species. A CyAG. B matK. C in Species delimitation in Ceratozamia (Zamiaceae) from Southwestern Mexico, in light of reproductive and climatic diversification
Fig. 8 The haplotype network for Ceratozamia species. A CyAG. B matK. C ITS region. The area of the circles is proportional to haplotype frequency
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.