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356 results for “heritability”
Cryptic community structure and metabolic interactions among the heritable facultative symbionts of the pea aphid
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Data from: Heritability in the Rhesus macaque (Macaca mulatta) vertebral column
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Changing food availability and its effect on the heritability of offspring size in woodland passerine birds
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The c-Abl inhibitor IkT-148009 therapeutically suppresses neurodegeneration in models of heritable and sporadic Parkinson’s Disease
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prg-1 longevity germline nucleoli: Piwi mutant germ cells transmit a form of heritable stress that promotes longevity
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Heritability of plastic trait changes in drought-exposed ponderosa pine seedlings
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Data from: Heritable variation in root secondary metabolites is associated with recent climate
<p>1. Plants can adapt to changing environments by adjusting the production and maintenance of diverse sets of bioactive secondary metabolites. To date, the impact of climatic conditions relative to other factors such as soil abiotic factors and herbivore pressure on the evolution of plant secondary metabolites is poorly understood, especially for plant roots.</p> <p>2. We explored associations between root latex secondary metabolites in 63 Taraxacum officinale populations across Switzerland and climatic conditions, soil abiotic parameters, root herbivore pressure and cytotype distribution. To assess the contribution of environmental effects, root secondary metabolites were measured in F0 plants in nature and F2 plants under controlled greenhouse conditions.</p> <p>3. Concentrations of root latex secondary metabolites were most strongly associated with climatic conditions, while current soil abiotic factors or root herbivore pressure did not show a clear association with root latex chemistry. Results were similar for natural and controlled conditions, suggesting heritable variation rather than environmental plasticity as underlying factor.</p> <p>4. Synthesis. We conclude that climatic conditions likely play a major role in the evolution of root secondary metabolites. These results may hint at a novel role of root latex metabolites in tolerance of abiotic stress.</p>
Heritability analysis of the 38 cancers in the UK Biobank
<p>The dataset includes genome-wide and gene-level heritability analyses of the 38 cancers in the UK Biobank, using the Bayesian Gene HERitability Analysis (BAGHERA) method. The dataset provides also enrichment analyses results for cancer heritability genes with respect to Gene Ontology terms and cancer signatures. </p> <p>A detailed description of the dataset is provided in the MANIFEST.md file.</p>
Ant cuticular hydrocarbons are heritable and associated with variation in colony productivity
<p>In social insects, cuticular hydrocarbons function in nestmate recognition and also provide a waxy barrier against desiccation, but basic evolutionary features, including the heritability of hydrocarbon profiles and how they are shaped by natural selection are largely unknown. We used a new pharaoh ant (Monomorium pharaonis) laboratory mapping population to estimate the heritability of individual cuticular hydrocarbons, genetic correlations between hydrocarbons, and fitness consequences of phenotypic variation in the hydrocarbons. Individual hydrocarbons had low to moderate estimated heritability, indicating that some compounds provide more information about genetic relatedness and can also better respond to natural selection. Strong genetic correlations between compounds are likely to constrain independent evolutionary trajectories, which is expected given that many hydrocarbons share biosynthetic pathways. Variation in cuticular hydrocarbons was associated with variation in colony productivity, with some hydrocarbons experiencing strong directional selection. Altogether, this study builds on our knowledge of the genetic architecture of the social insect hydrocarbon profile and indicates that hydrocarbon variation is shaped by natural selection. </p>
Data from: Macroevolutionary persistence of heritable endosymbionts: acquisition, retention, and expression of adaptive phenotypes in Spiroplasma
The phylogenetic incongruence between insects and their facultative maternally transmitted endosymbionts indicates that these infections are generally short-lived evolutionarily. Therefore, long-term persistence of many endosymbionts must depend on their ability to colonize and spread within new host species. At least 17 species of Drosophila are infected with endosymbiotic Spiroplasma that have various phenotypic effects. We transinfected five strains of Spiroplasma from three divergent clades into Drosophila neotestacea to test their capacity to spread in a novel host. A strain that causes male killing in Drosophila melanogaster (its native host) also does so in D. neotestacea, even though these host species diverged 40–60 mya. A strain native to D. neotestacea (designated sNeo) and the two other strains of the poulsonii clade of Spiroplasma confer resistance to wasp parasitism, suggesting that this trait may be ancestral within this clade of Spiroplasma. Conversely, no strain other than sNeo conferred resistance to the sterilizing effects of nematode parasitism, suggesting that nematode resistance is a recently derived condition. The apparent addition of nematode resistance to a Spiroplasma lineage that already confers resistance to wasp parasitism suggests endosymbionts can increase the repertoire of traits conducive to their spread. The capacity of an endosymbiont to undergo maternal transmission and express adaptive phenotypes in novel hosts, without requiring a period of host–symbiont co-evolution, enables the spread of such symbionts immediately after the colonization of a new host. This could be critical for the macroevolutionary persistence of facultative endosymbionts whose sojourn times within individual host species are relatively brief.
Data from: Horizontal Transmission of the Heritable Protective Endosymbiont Hamiltonella defensa Depends on Titre and Haplotype
<p></p><p>Secondary endosymbionts of aphids have an important ecological and evolutionary impact on their host, as they provide resistance to natural enemies but also reduce the host's lifespan and reproduction. While secondary symbionts of aphids are faithfully transmitted from mother to offspring, they also have some capacity to be transmitted horizontally between aphids. Here we explore whether 11 isolates from 3 haplotypes of the secondary endosymbiont Hamiltonella defensa differ in their capacity for horizontal transmission. These isolates vary in the protection they provide against parasitoid wasps as well as the costs they inflict on their host, Aphis fabae. We simulated natural horizontal transmission through parasitoid wasps by stabbing aphids with a thin needle and assessed horizontal transmission success of the isolates from one shared donor clone into three different recipient clones. Specifically, we asked whether potentially costly isolates reaching high cell densities in aphid hosts are more readily transmitted through this route. This hypothesis was only partially supported. While transmissibility increased with titre for isolates from two haplotypes, isolates of the H. defensa haplotype 1 were transmitted with greater frequency than isolates of other haplotypes with comparable titres. Thus, it is not sufficient to be merely frequent—endosymbionts might have to evolve specific adaptations to transmit effectively between hosts.</p><p></p>
Data from: Quantitative genetics of a carotenoid-based color: heritability and persistent natal environmental effects in the great tit
The information content of signals, such as animal coloration, depends on the extent to which variation reflects underlying biological processes. Although animal coloration has received considerable attention, little work has addressed the quantitative genetics of colour variation in natural populations. We investigated the quantitative genetics of a carotenoid-based colour patch - the ventral plumage of mature great tits (Parus major) - in a wild population. Carotenoid-based colours are often suggested to reflect environmental variation in carotenoid availability, but numerous mechanisms could also lead to genetic variation in coloration. Analyses of individuals of known origin showed that while plumage chromaticity ('colour') was moderately heritable, there was no significant heritability to achromaticity ('brightness'). We detected multiple long-lasting effects of natal environment, with hatching date and brood size both negatively related to plumage chromaticity at maturity. Our reflectance measures contrasted in their spatiotemporal sensitivity, with plumage chromaticity exhibiting significant spatial variation while achromatic variation exhibited marked annual variation. Hence, colour variation in this species reflects both genetic and environmental influences on different scales. Our analyses demonstrate the context-dependence of components of colour variation and suggest that colour patches may convey multiple aspects of individual state.
Data from: Is pairing with a relative heritable? estimating female and male genetic contributions to the degree of biparental inbreeding in song sparrows (Melospiza melodia)
The degree of inbreeding expressed within populations can profoundly shape evolutionary dynamics. The degree to which individuals inbreed is frequently assumed to evolve in response to selection, for example resulting from inbreeding depression. Such evolutionary responses require additive genetic variance (VA) in the degree to which individuals inbreed. However, the magnitude of VA in the degree of biparental inbreeding has never been estimated. We devised a quantitative genetic model to estimate sex-specific VA in the degree to which individuals inbreed, while accounting for effects of individuals' own coefficients of inbreeding and genetic effects stemming from immigration. We applied this model to the degree of inbreeding expressed through social pairing in free-living song sparrows (Melospiza melodia). VA estimates for both sexes appreciably exceeded zero and the cross-sex genetic covariance was strongly positive, creating substantial total VA in the degree of inbreeding. Our analyses also revealed inbreeding depression in the degree of inbreeding such that more inbred individuals paired with closer relatives, and immigrant effects such that individuals with greater genomic contributions from immigrants paired with more distant relatives. We thereby demonstrate that the degree of biparental inbreeding can show substantial VA in nature and might consequently evolve in response to selection.
Data from: Heritable differences in fitness-related traits among populations of the mustard hill coral, Porites astreoides
A population's potential for rapid evolutionary adaptation can be estimated from the amount of genetic variation in fitness-related traits. Inshore populations of the mustard hill coral (Porites astreoides) have been shown to be more tolerant to thermal stress than offshore populations, but it is unclear whether this difference is due to long-term physiological acclimatization or genetic adaptation. Here, we evaluated variation in growth rate and survival among 38 families of juvenile recruits of P. astreoides spawned by colonies originating from inshore and offshore locations. Recruits were reared in a common garden for 5 weeks and then subjected to two thermal treatments (28 and 31 °C) for 2.5 weeks. The most significant effects were detected during the first 5 weeks, before thermal stress was applied: 27–30% of variance in growth and 94% of variance in recruit survival was attributable to parental effects. Genotyping of eight microsatellite loci indicated that the high early mortality of some of the recruit families was not due to higher inbreeding. Post treatment, parental effects diminished such that only 10–15% of variance in growth rate was explained, which most likely reflects the dissipation of maternal effects. However, offshore-origin recruits still grew significantly less under elevated temperature compared with inshore-origin recruits. These differences observed in naive juvenile corals suggest that population-level variation in fitness in response to different thermal environments has a genetic basis and could represent raw material for natural selection in times of climate change.
Data from: Plasticity and heritability of morphological variation within and between parapatric stickleback demes
The threespine stickleback (Gasterosteus aculeatus) has emerged as an important model organism in evolutionary ecology, largely due to the repeated, parallel evolution of divergent morphotypes found in populations having colonized freshwater habitats. However, morphological divergence following colonization is not a universal phenomenon. We explore this in a large-scale estuarine ecosystem inhabited by two parapatric stickleback demes, each physiologically adapted to divergent osmoregulatory environments (fresh vs. saline waters). Using geometric morphometric analyses of wild-caught individuals, we detected significant differences between demes, in addition to sexual dimorphism, in body shape. However, rearing full-sib families from each deme under controlled, reciprocal salinity conditions revealed no differences between genotypes and highly significant environmental effects. It is also noteworthy that fish from both demes were fully plated, whether found in the wild or reared under reciprocal salinity conditions. Although we found significant heritability for body shape, we also noted significant direct environmental effects for many latent shape variables. Moreover, we found little evidence for diversifying selection acting on body size and shape (QST). Nevertheless, uniform compressive variation did exceed neutral expectations, yet despite evidence of both allometry and genetic correlation with body length, we detected no correlated signatures of selection. Taken together, these results suggest that much of the morphological divergence observed in this system is the result of plastic responses to environmental variation rather than adaptive differentiation.
Data from: Developmental instability is genetically correlated with phenotypic plasticity, constraining heritability, and fitness
Although adaptive plasticity would seem always to be favored by selection, it occurs less often than expected. This lack of ubiquity suggests that there must be trade-offs, costs, or limitations associated with plasticity. Yet, few costs have been found. We explore one type of limitation, a correlation between plasticity and developmental instability, and use quantitative genetic theory to show why one should expect a genetic correlation. We test that hypothesis using the Landsberg erecta × Cape Verde Islands recombinant inbred lines (RILs) of Arabidopsis thaliana. RILs were grown at four different nitrogen (N) supply levels that span the range of N availabilities previously documented in North American field populations. We found a significant multivariate relationship between the cross-environment trait plasticity and the within-environment, within-RIL developmental instability across 13 traits. This genetic covariation between plasticity and developmental instability has two costs. First, theory predicts diminished fitness for highly plastic lines under stabilizing selection, because their developmental instability and variance around the optimum phenotype will be greater compared to nonplastic genotypes. Second, empirically the most plastic traits exhibited heritabilities reduced by 57% on average compared to nonplastic traits. This demonstration of potential costs in inclusive fitness and heritability provoke a rethinking of the evolutionary role of plasticity.
Data from: Range size heritability in Carnivora is driven by geographic constraints
Range size heritability refers to an intriguing pattern where closely related species occupy geographic ranges of similar extent. Its existence may indicate selection on traits only emergent at the species level, with interesting consequences for evolutionary processes. We explore whether range size heritability may be attributable to the fact that range size is largely driven by the size of geographic domains (i.e. continents, biomes, areas given by species' climatic tolerance) which tend to be similar in phylogenetically related species. Using a well resolved phylogeny of carnivorans, we show that range sizes are indeed constrained by geographic domains and that the phylogenetic signal in range sizes diminishes if the domain sizes are accounted for. Moreover, detailed delimitation of species' geographic domain leads to a weaker signal in range size heritability, indicating the importance of definition of the null model against which the pattern is tested. Our findings do not reject the hypothesis of range size heritability, but rather unravel its underlying mechanisms. Additional analyses imply that evolutionary conservatism in niche breadth delimits the species' geographic domain, which in turn shapes the species' range size. Range size heritability patterns thus emerge as a consequence of this interplay between evolutionary and geographic constraints.
Data from: Heritability estimates from genome wide relatedness matrices in wild populations: application to a passerine, using a small sample size
Genomic developments have empowered the investigation of heritability in wild populations directly from genome wide relatedness matrices (GRM). Such GRM based approaches can in particular be used to improve or substitute approaches based on social pedigree (PED-social). However, measuring heritability from GRM in the wild has not been widely applied yet, especially using small samples and in non-model species. Here, we estimated heritability for four quantitative traits (tarsus length, wing length, bill length and body mass), using PED-social and a pedigree corrected by genetic data (PED-corrected) and GRM from a small sample (n = 494) of blue tits from natural populations in Corsica genotyped at nearly 50,000 filtered SNPs derived from RAD-seq. We also measured genetic correlations among traits and we performed chromosome partitioning. Heritability estimates were slightly higher when using GRM compared to PED-social, and PED-corrected yielded intermediate values, suggesting a minor underestimation of heritability in PED-social due to incorrect pedigree links, including extra-pair paternity, and to lower information content than the GRM. Genetic correlations among traits were similar between PED-social and GRM but credible intervals were very large in both cases, suggesting a lack of power for this small dataset. Although a positive linear relationship was found between the number of genes per chromosomes and the chromosome heritability for tarsus length, chromosome partitioning similarly showed a lack of power for the three other traits. We discuss the usefulness and limitations of the quantitative genetic inferences based on genomic data in small samples from wild populations.
Data from: Baseline and stress-induced corticosterone levels are heritable and genetically correlated in a barn owl population
The hypothalamic-pituitary-adrenal (HPA) axis is responsible for the regulation of corticosterone, a hormone that is essential in the mediation of energy allocation and physiological stress. As a continuous source of challenge and stress for organisms, the environment has promoted the evolution of physiological adaptations and led to a great variation in corticosterone profiles within or among individuals, populations and species. In order to evolve via natural selection, corticosterone levels do not only depend on the strength of selection exerted on them but also on the extent to which the regulation of corticosterone is heritable. Nevertheless, heritability of corticosterone profiles in wild populations is still poorly understood. In this study, we estimated the heritability of baseline and stress-induced corticosterone levels in barn owl (Tyto alba) nestlings from 8 years of data, using a multivariate animal model based on a behavioural pedigree. We found that baseline and stress-induced corticosterone levels are strongly genetically correlated (r = 0.68 – 0.80) and that the heritability of stress-induced corticosterone levels (h2 = 0.24 – 0.33) was moderate and similar to the heritability of baseline corticosterone levels (h2 = 0.19 – 0.30). These findings suggest that the regulation of stress-induced corticosterone and baseline levels evolve at a similar pace when selection acts with the same intensity on both traits, and that contrary to previous studies, the evolution of baseline and stress-induced level is interdependent in barn owls, as they may be strongly genetically correlated.
Data from: Cancer cell lines show high heritability for motility but not generation time
<p>Tumour evolution depends on heritable differences between cells in traits affecting cell survival or replication. It is well-established that cancer cells are genetically and phenotypically heterogeneous; however, the extent to which this phenotypic variation is heritable is far less well-explored. Here we estimate the broad-sense heritability (H2) of two cell traits related to cancer hallmarks - cell motility and generation time - within populations of four cancer cell lines in vitro, and find that motility is strongly heritable. This heritability is stable across multiple cell generations, with heritability values at the high end of those measured for a range of traits in natural populations of animals or plants. These findings confirm a central assumption of cancer evolution, provide a first quantification of the evolvability of key traits in cancer cells, and indicate that there is ample raw material for experimental evolution in cancer cell lines. Generation time, a trait directly affecting cell fitness, shows substantially lower values of heritability than cell speed, consistent with its having been under directional selection removing heritable variation.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.