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118 results for “identification tool”
Data from: New molecular tools for the identification of two endangered smooth-hound sharks, Mustelus mustelus and Mustelus punctulatus
Open the record for dataset details and reuse information.
Identification and validation of 174 COVID‑19 vaccine candidate epitopes reveals low performance of common epitope prediction tools
<p>Datasets used in "Identification and validation of 174 COVID‑19 vaccine candidate epitopes reveals low performance of common epitope prediction tools"</p> <p>sars-cov-2_predicted.csv</p> <p>SARS-CoV-2 peptides predicted to be binders to 11 HLA alleles by the NetMHC suite tools, these selected peptides have been measured in a stability assay revealing SARS-CoV-2 epitopes (assay results can be found at: https://www.immunitrack.com/free-coronavirus-report-for-download/). </p> <p>tools_predictions_binders.xlsx</p> <p>File containing all predictions for tools tested in the benchmark (note that not all tools use same measure). List of binders (epitopes) with IEDB links and T cell studies overlap.</p>
FIGURE 1 in Wing Interference Patterns in patterned wings of Culicoides Latreille, 1809 (Diptera: Ceratopogonidae)-exploring potential identification tool
FIGURE 1. Scheme of wing venation of biting midge from genus Culicoides.
Data from: Identification and validation of single nucleotide polymorphisms as tools to detect hybridization and population structure in freshwater stingrays
Single nucleotide polymorphism (SNP) markers were identified and validated for two stingrays species, Potamotrygon motoro and Potamotrygon falkneri, using double digest restriction-site associated DNA (ddRAD) reads using 454-Roche technology. A total of 226 774 reads (65.5 Mb) were obtained (mean read length 289 ± 183 bp) detecting a total of 5399 contigs (mean contig length: 396 ± 91 bp). Mining this data set, a panel of 143 in silico SNPs was selected. Eighty-two of these SNPs were successfully validated and 61 were polymorphic: 14 in P. falkneri, 21 in P. motoro, 3 in both species and 26 fixed for alternative variants in both species, thus being useful for population analyses and hybrid detection.
Supplementary material 4 from: Jin S, Parks KS, Janzen DH, Hallwachs W, Dyer LA, Whitfield JB (2023) The wing interference patterns (WIPs) of Parapanteles (Braconidae, Microgastrinae): demonstrating a powerful and accessible tool for species-level identification of small and clear winged insects. Journal of Hymenoptera Research 96: 967-982. https://doi.org/10.3897/jhr.96.111382
Data files and R code
Supplementary material 3 from: Jin S, Parks KS, Janzen DH, Hallwachs W, Dyer LA, Whitfield JB (2023) The wing interference patterns (WIPs) of Parapanteles (Braconidae, Microgastrinae): demonstrating a powerful and accessible tool for species-level identification of small and clear winged insects. Journal of Hymenoptera Research 96: 967-982. https://doi.org/10.3897/jhr.96.111382
Wing interference patterns
Supplementary material 2 from: Jin S, Parks KS, Janzen DH, Hallwachs W, Dyer LA, Whitfield JB (2023) The wing interference patterns (WIPs) of Parapanteles (Braconidae, Microgastrinae): demonstrating a powerful and accessible tool for species-level identification of small and clear winged insects. Journal of Hymenoptera Research 96: 967-982. https://doi.org/10.3897/jhr.96.111382
Qualitative descriptions and materials examined for Parapanteles species included in this study
Supplementary material 1 from: Jin S, Parks KS, Janzen DH, Hallwachs W, Dyer LA, Whitfield JB (2023) The wing interference patterns (WIPs) of Parapanteles (Braconidae, Microgastrinae): demonstrating a powerful and accessible tool for species-level identification of small and clear winged insects. Journal of Hymenoptera Research 96: 967-982. https://doi.org/10.3897/jhr.96.111382
Taxonomic summary of published wing interference pattern images and/or descriptions
Fig. 2 in First record of Atherigona reversura Villeneuve (Diptera: Muscidae) feeding on Bermudagrass (Cynodon dactylon cv. Jiggs, Poaceae) in Brazil: morphological and molecular tools for identification
Fig. 2. Atherigona (Acritochaeta) orientalis: (A) Palpus male, (B) Mesonotum male, dorsal view, (C) Wing. Atherigona (Atherigona) reversura: (D) Palpus male, (E) Mesonotum male, dorsal view, (F) Wing. Abbreviations: b sctl s, basal scutellar seta; dm cell, discal median cell; plp, palpus; R1, radial 1 vein; r-m, radial-medial crossvein; sb l s, subbasal lateral seta; Sc, subcostal; sctl, scutellum.
Fig. 1 in First record of Atherigona reversura Villeneuve (Diptera: Muscidae) feeding on Bermudagrass (Cynodon dactylon cv. Jiggs, Poaceae) in Brazil: morphological and molecular tools for identification
Fig. 1. (A) Cynodon dactylon cv. Jiggs showing plant damage. Atherigona (Atherigona) reversura: (B) larvae; (C) puparium; (D) adult. Scale bars = 1 mm.
scPanel: A tool for automatic identification of sparse gene panels for generalizable patient classification using scRNA-seq datasets
<p>Dataset used to reproduce severe COVID-19 prediction results in scPanel manuscript.</p>
Supplementary material 3 from: Assmann T, Boutaud E, Buse J, Drees C, Friedman A-L, Harry I, Khoury F, Orbach E, Renan I, Schmidt C, Schmidt K, Wrase DW, Zumstein P (2021) The ground beetle tribe Platynini Bonelli, 1810 (Coleoptera, Carabidae) in the southern Levant: dichotomous and interactive identification tools, ecological traits, and distribution. In: Spence J, Casale A, Assmann T, Liebherr JК, Penev L (Eds) Systematic Zoology and Biodiversity Science: A tribute to Terry Erwin (1940-2020). ZooKeys 1044: 449-478. https://doi.org/10.3897/zookeys.1044.62615
Exported knowledge database 'Platynini, southern Levant' file in sdd generated by Xper3
Figures 22- 23 from: Assmann T, Boutaud E, Buse J, Drees C, Friedman A-L, Harry I, Khoury F, Orbach E, Renan I, Schmidt C, Schmidt K, Wrase DW, Zumstein P (2021) The ground beetle tribe Platynini Bonelli, 1810 (Coleoptera, Carabidae) in the southern Levant: dichotomous and interactive identification tools, ecological traits, and distribution. In: Spence J, Casale A, Assmann T, Liebherr JК, Penev L (Eds) Systematic Zoology and Biodiversity Science: A tribute to Terry Erwin (1940-2020). ZooKeys 1044: 449-478. https://doi.org/10.3897/zookeys.1044.62615
Figures 22- 23 Apical margins of elytra of Platynini species 22Atranus ruficollis23Orthotrichus cymindoides.
Figures 24-26 from: Assmann T, Boutaud E, Buse J, Drees C, Friedman A-L, Harry I, Khoury F, Orbach E, Renan I, Schmidt C, Schmidt K, Wrase DW, Zumstein P (2021) The ground beetle tribe Platynini Bonelli, 1810 (Coleoptera, Carabidae) in the southern Levant: dichotomous and interactive identification tools, ecological traits, and distribution. In: Spence J, Casale A, Assmann T, Liebherr JК, Penev L (Eds) Systematic Zoology and Biodiversity Science: A tribute to Terry Erwin (1940-2020). ZooKeys 1044: 449-478. https://doi.org/10.3897/zookeys.1044.62615
Figures 24-26 Apical part of left elytron with 5th stria and adjacent intervals of Platynini species 24Agonum monachum syriacum: depressed 25A. mesostictum: not depressed 26A. nigrum: not depressed, but see Fig. 4 for an A. nigrum individual with depression.
Figures 27-30 from: Assmann T, Boutaud E, Buse J, Drees C, Friedman A-L, Harry I, Khoury F, Orbach E, Renan I, Schmidt C, Schmidt K, Wrase DW, Zumstein P (2021) The ground beetle tribe Platynini Bonelli, 1810 (Coleoptera, Carabidae) in the southern Levant: dichotomous and interactive identification tools, ecological traits, and distribution. In: Spence J, Casale A, Assmann T, Liebherr JК, Penev L (Eds) Systematic Zoology and Biodiversity Science: A tribute to Terry Erwin (1940-2020). ZooKeys 1044: 449-478. https://doi.org/10.3897/zookeys.1044.62615
Figures 27-30 Apical part of Head of Platynini species 27Olisthopus glabricollis28Agonum rugicolle29Anchomenus alcedo30Atranus ruficollis. Abbreviations: la: labrum, mdb: mandible.
Figures 9-12 from: Assmann T, Boutaud E, Buse J, Drees C, Friedman A-L, Harry I, Khoury F, Orbach E, Renan I, Schmidt C, Schmidt K, Wrase DW, Zumstein P (2021) The ground beetle tribe Platynini Bonelli, 1810 (Coleoptera, Carabidae) in the southern Levant: dichotomous and interactive identification tools, ecological traits, and distribution. In: Spence J, Casale A, Assmann T, Liebherr JК, Penev L (Eds) Systematic Zoology and Biodiversity Science: A tribute to Terry Erwin (1940-2020). ZooKeys 1044: 449-478. https://doi.org/10.3897/zookeys.1044.62615
Figures 9-12 Platynini species 9Anchomenus alcedo10Anchomenus bellus11Anchomenus dorsalis infuscatus12Atranus ruficollis.
Figures 18-21 from: Assmann T, Boutaud E, Buse J, Drees C, Friedman A-L, Harry I, Khoury F, Orbach E, Renan I, Schmidt C, Schmidt K, Wrase DW, Zumstein P (2021) The ground beetle tribe Platynini Bonelli, 1810 (Coleoptera, Carabidae) in the southern Levant: dichotomous and interactive identification tools, ecological traits, and distribution. In: Spence J, Casale A, Assmann T, Liebherr JК, Penev L (Eds) Systematic Zoology and Biodiversity Science: A tribute to Terry Erwin (1940-2020). ZooKeys 1044: 449-478. https://doi.org/10.3897/zookeys.1044.62615
Figures 18-21 Pronotum of Platynini species 18Olisthopus fuscatus19Olisthopus glabricollis20Orthotrichus cymindoides21Atranus ruficollis.
Figures 5-8 from: Assmann T, Boutaud E, Buse J, Drees C, Friedman A-L, Harry I, Khoury F, Orbach E, Renan I, Schmidt C, Schmidt K, Wrase DW, Zumstein P (2021) The ground beetle tribe Platynini Bonelli, 1810 (Coleoptera, Carabidae) in the southern Levant: dichotomous and interactive identification tools, ecological traits, and distribution. In: Spence J, Casale A, Assmann T, Liebherr JК, Penev L (Eds) Systematic Zoology and Biodiversity Science: A tribute to Terry Erwin (1940-2020). ZooKeys 1044: 449-478. https://doi.org/10.3897/zookeys.1044.62615
Figures 5-8 Platynini species 5Agonum rugicolle6Agonum sordidum7Agonum viridicupreum8Orthotrichus cymindoides.
Figures 31-34 from: Assmann T, Boutaud E, Buse J, Drees C, Friedman A-L, Harry I, Khoury F, Orbach E, Renan I, Schmidt C, Schmidt K, Wrase DW, Zumstein P (2021) The ground beetle tribe Platynini Bonelli, 1810 (Coleoptera, Carabidae) in the southern Levant: dichotomous and interactive identification tools, ecological traits, and distribution. In: Spence J, Casale A, Assmann T, Liebherr JК, Penev L (Eds) Systematic Zoology and Biodiversity Science: A tribute to Terry Erwin (1940-2020). ZooKeys 1044: 449-478. https://doi.org/10.3897/zookeys.1044.62615
Figures 31-34 Habitats of Platynini species in the southern Levant 31 Merom Golan (Golan Heights): water reservoir, habitat of Agonum rugicolle, A. sordidum, A. marginatum, A. viridicupreum, A. nigrum, and Anchomenus dorsalis infuscatus32 Ein Akev (Central Negev): headwater stream in desert, habitat of Agonum nigrum33 Breikhat Ya'ar (Coastal Plain, east of Hadera): winter pond, habitat of Agonum monachum syriacum, A. viridicupreum, A. nigrum, and Anchomenus dorsalis infuscatus34 Nahal Bezet (Upper Galilee): softwood floodplain woodland with Oleander (Nerium oleander), habitat of Atranus ruficollis.
Figures 1-4 from: Assmann T, Boutaud E, Buse J, Drees C, Friedman A-L, Harry I, Khoury F, Orbach E, Renan I, Schmidt C, Schmidt K, Wrase DW, Zumstein P (2021) The ground beetle tribe Platynini Bonelli, 1810 (Coleoptera, Carabidae) in the southern Levant: dichotomous and interactive identification tools, ecological traits, and distribution. In: Spence J, Casale A, Assmann T, Liebherr JК, Penev L (Eds) Systematic Zoology and Biodiversity Science: A tribute to Terry Erwin (1940-2020). ZooKeys 1044: 449-478. https://doi.org/10.3897/zookeys.1044.62615
Figures 1-4 Platynini species 1Agonum marginatum2Agonum mesostictum3Agonum monachum syriacum4Agonum nigrum.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.