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11,710 results for “interactions”
Fire-severity effects on plant-fungal interactions after a novel tundra wildfire disturbance: implications for arctic shrub and tree migration
Background-Vegetation change in high latitude tundra ecosystems is expected to accelerate due to increased wildfire activity. High-severity fires increase the availability of mineral soil seedbeds, which facilitates recruitment, yet fire also alters soil microbial composition, which could significantly impact seedling establishment. Results - We investigated the effects of fire severity on soil biota and associated effects on plant performance for two plant species predicted to expand into Arctic tundra. We inoculated seedlings in a growth chamber experiment with soils collected from the largest tundra fire recorded in the Arctic and used molecular tools to characterize root-associated fungal communities. Seedling biomass was significantly related to the composition of fungal inoculum. Biomass decreased as fire severity increased and the proportion of pathogenic fungi increased. Conclusions - Our results suggest that effects of fire severity on soil biota reduces seedling performance and thus we hypothesize that in certain ecological contexts fire-severity effects on plant-fungal interactions may dampen the expected increases in tree and shrub establishment after tundra fire.
Sediment and nutrient deposition and plant-soil phosphorus interactions associated with Hurricane Irma (2017) in mangroves of the Florida Coastal Everglades (FCE LTER), Florida
We quantified how Hurricane Irma influenced soil nutrient pools, vertical accretion, and plant phosphorus (P) uptake after its passage across the Florida Coastal Everglades in September 2017. Mangrove leaf litter data from three years (2008, 2014, 2018) were selected for each site at Shark River estuary to identify species-specific foliar P responses post-Wilma’s impact in 2005 and immediate post-Irma’s impact in 2017. We also monitored porewater SRP concentrations in the Shark River mangrove sites to evaluate the effect of Hurricane Irma on soil chemistry. The data in this data package were used in the following paper: Castañeda-Moya, E., V.H. Rivera-Monroy, R.M. Chambers, X. Zhao, L. Lamb-Wotton, A. Gorsky, E.E. Gaiser, T.G. Troxler, J.S. Kominoski, and M. Hiatt. 2020. Hurricanes fertilize mangrove forests in the Gulf of Mexico (Florida Everglades, USA). PNAS. In Press.
Meteorology and soil moisture data collected at multiple frequencies from the Cross-scale Interactions Study (CSIS) Block-1 site automated monitoring stations: Jornada Basin LTER, 2013 - ongoing
This dataset contains summary data collected at the Jornada Basin LTER program's Cross Scale Interactions Study (CSIS) Block-1 site automated weather station and associated soil substation at several temporal scales. Air temperature and wind are summarized every 5-minutes, and all aboveground sensors are summarized at 30-minute, hourly and daily frequencies. Soil moisture is measured at a 30-minute frequency and summarized daily. Observed values include average/maximum/minimum air temperature, relative humidity, and wind speed; average wind direction; soil moisture, temperature and conductivity. Aboveground sensors are measured and calculated based on 1-second scan rate. Soil moisture is measured every 30-minutes near the weather station and approximately 30-meters distance at a nearby substation. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximately 2.5m. Soil sensors are installed at 10, 20 and 30cm depths. The nearest precipitation data is available from CSIS Block-2 site automated weather station located 309m distance.
Meteorology and soil moisture data collected at multiple frequencies from the Cross-scale Interactions Study (CSIS) Block-2 site automated monitoring stations: Jornada Basin LTER, 2013 - ongoing
This dataset contains summary data collected at the Jornada Basin LTER program's Cross Scale Interactions Study (CSIS) Block-2 site automated weather station and associated soil substation at several temporal scales. Precipitation data are collected at 1-second frequency during rain events, air temperature and wind are summarized every 5-minutes, and all aboveground sensors are summarized at 30-minute, hourly and daily frequencies. Soil moisture is measured at a 30-minute frequency and summarized daily. Observed values include average/maximum/minimum air temperature, relative humidity, and wind speed; average wind direction; soil moisture, temperature and conductivity. Aboveground sensors are measured and calculated based on 1-second scan rate. Soil moisture is measured every 30-minutes near the weather station and approximately 30-meters distance at a nearby substation. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximately 2.5m. Soil sensors are installed at 10, 20 and 30cm depths.
Meteorology and soil moisture data collected at multiple frequencies from the Cross-scale Interactions Study (CSIS) Block-3 site automated monitoring stations: Jornada Basin LTER, 2013 - ongoing
This dataset contains summary data collected at the Jornada Basin LTER program's Cross Scale Interactions Study (CSIS) Block-3 site automated weather station and associated soil substation at several temporal scales. Precipitation data are collected at 1-second frequency during rain events, air temperature and wind are summarized every 5-minutes, and all aboveground sensors are summarized at 30-minute, hourly and daily frequencies. Soil moisture is measured at a 30-minute frequency and summarized daily. Observed values include average/maximum/minimum air temperature, relative humidity, and wind speed; average wind direction; soil moisture, temperature and conductivity. Aboveground sensors are measured and calculated based on 1-second scan rate. Soil moisture is measured every 30-minutes near the weather station and approximately 30-meters distance at a nearby substation. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximately 2.5m. Soil sensors are installed at 10, 20 and 30cm depths.
Meteorology and soil moisture data collected at multiple frequencies from the Cross-scale Interactions Study (CSIS) Block-4 site automated monitoring stations: Jornada Basin LTER, 2013 - ongoing
This dataset contains summary data collected at the Jornada Basin LTER program's Cross Scale Interactions Study (CSIS) Block-4 site automated weather station and associated soil substation at several temporal scales. Precipitation data are collected at 1-second frequency during rain events, air temperature and wind are summarized every 5-minutes, and all aboveground sensors are summarized at 30-minute, hourly and daily frequencies. Soil moisture is measured at a 30-minute frequency and summarized daily. Observed values include average/maximum/minimum air temperature, relative humidity, and wind speed; average wind direction; soil moisture, temperature and conductivity. Aboveground sensors are measured and calculated based on 1-second scan rate. Soil moisture is measured every 30-minutes near the weather station and approximately 30-meters distance at a nearby substation. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximately 2.5m. Soil sensors are installed at 10, 20 and 30cm depths.
Meteorology and soil moisture data collected at multiple frequencies from the Cross-scale Interactions Study (CSIS) Block-5 site automated monitoring stations: Jornada Basin LTER, 2013 - ongoing
This dataset contains summary data collected at the Jornada Basin LTER program's Cross Scale Interactions Study (CSIS) Block-5 site automated weather station and associated soil substation at several temporal scales. Precipitation data are collected at 1-second frequency during rain events, air temperature and wind are summarized every 5-minutes, and all aboveground sensors are summarized at 30-minute, hourly and daily frequencies. Soil moisture is measured at a 30-minute frequency and summarized daily. Observed values include average/maximum/minimum air temperature, relative humidity, and wind speed; average wind direction; soil moisture, temperature and conductivity. Aboveground sensors are measured and calculated based on 1-second scan rate. Soil moisture is measured every 30-minutes near the weather station and approximately 30-meters distance at a nearby substation. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximately 2.5m. Soil sensors are installed at 10, 20 and 30cm depths.
Meteorology and soil moisture data collected at multiple frequencies from the Cross-scale Interactions Study (CSIS) Block-6 site automated monitoring stations: Jornada Basin LTER, 2013 - ongoing
This dataset contains summary data collected at the Jornada Basin LTER program's Cross Scale Interactions Study (CSIS) Block-6 site automated weather station and associated soil substation at several temporal scales. Precipitation data are collected at 1-second frequency during rain events, air temperature and wind are summarized every 5-minutes, and all aboveground sensors are summarized at 30-minute, hourly and daily frequencies. Soil moisture is measured at a 30-minute frequency and summarized daily. Observed values include average/maximum/minimum air temperature, relative humidity, and wind speed; average wind direction; soil moisture, temperature and conductivity. Aboveground sensors are measured and calculated based on 1-second scan rate. Soil moisture is measured every 30-minutes near the weather station and approximately 30-meters distance at a nearby substation. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximately 2.5m. Soil sensors are installed at 10, 20 and 30cm depths.
Meteorology and soil moisture data collected at multiple frequencies from the Cross-scale Interactions Study (CSIS) Block-7 site automated monitoring stations: Jornada Basin LTER, 2013 - ongoing
This dataset contains summary data collected at the Jornada Basin LTER program's Cross Scale Interactions Study (CSIS) Block-7 site automated weather station and associated soil substation at several temporal scales. Precipitation data are collected at 1-second frequency during rain events, air temperature and wind are summarized every 5-minutes, and all aboveground sensors are summarized at 30-minute, hourly and daily frequencies. Soil moisture is measured at a 30-minute frequency and summarized daily. Observed values include average/maximum/minimum air temperature, relative humidity, and wind speed; average wind direction; soil moisture, temperature and conductivity. Aboveground sensors are measured and calculated based on 1-second scan rate. Soil moisture is measured every 30-minutes near the weather station and approximately 30-meters distance at a nearby substation. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximately 2.5m. Soil sensors are installed at 10, 20 and 30cm depths.
Meteorology and soil moisture data collected at multiple frequencies from the Cross-scale Interactions Study (CSIS) Block-8 site automated monitoring stations: Jornada Basin LTER, 2013 - ongoing
This dataset contains summary data collected at the Jornada Basin LTER program's Cross Scale Interactions Study (CSIS) Block-8 site automated weather station and associated soil substation at several temporal scales. Precipitation data are collected at 1-second frequency during rain events, air temperature and wind are summarized every 5-minutes, and all aboveground sensors are summarized at 30-minute, hourly and daily frequencies. Soil moisture is measured at a 30-minute frequency and summarized daily. Observed values include average/maximum/minimum air temperature, relative humidity, and wind speed; average wind direction; soil moisture, temperature and conductivity. Aboveground sensors are measured and calculated based on 1-second scan rate. Soil moisture is measured every 30-minutes near the weather station and approximately 30-meters distance at a nearby substation. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximately 2.5m. Soil sensors are installed at 10, 20 and 30cm depths.
Meteorology and soil moisture data collected at multiple frequencies from the Cross-scale Interactions Study (CSIS) Block-9 site automated monitoring stations: Jornada Basin LTER, 2013 - ongoing
This dataset contains summary data collected at the Jornada Basin LTER program's Cross Scale Interactions Study (CSIS) Block-9 site automated weather station and associated soil substation at several temporal scales. Precipitation data are collected at 1-second frequency during rain events, air temperature and wind are summarized every 5-minutes, and all aboveground sensors are summarized at 30-minute, hourly and daily frequencies. Soil moisture is measured at a 30-minute frequency and summarized daily. Observed values include average/maximum/minimum air temperature, relative humidity, and wind speed; average wind direction; soil moisture, temperature and conductivity. Aboveground sensors are measured and calculated based on 1-second scan rate. Soil moisture is measured every 30-minutes near the weather station and approximately 30-meters distance at a nearby substation. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximately 2.5m. Soil sensors are installed at 10, 20 and 30cm depths.
Meteorology and soil moisture data collected at multiple frequencies from the Cross-scale Interactions Study (CSIS) Block-10 site automated monitoring stations: Jornada Basin LTER, 2013 - ongoing
This dataset contains summary data collected at the Jornada Basin LTER program's Cross Scale Interactions Study (CSIS) Block-10 site automated weather station and associated soil substation at several temporal scales. Precipitation data are collected at 1-second frequency during rain events, air temperature and wind are summarized every 5-minutes, and all aboveground sensors are summarized at 30-minute, hourly and daily frequencies. Soil moisture is measured at a 30-minute frequency and summarized daily. Observed values include average/maximum/minimum air temperature, relative humidity, and wind speed; average wind direction; soil moisture, temperature and conductivity. Aboveground sensors are measured and calculated based on 1-second scan rate. Soil moisture is measured every 30-minutes near the weather station and approximately 30-meters distance at a nearby substation. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximately 2.5m. Soil sensors are installed at 10, 20 and 30cm depths.
Meteorology and soil moisture data collected at multiple frequencies from the Cross-scale Interactions Study (CSIS) Block-11 site automated monitoring stations: Jornada Basin LTER, 2013 - ongoing
This dataset contains summary data collected at the Jornada Basin LTER program's Cross Scale Interactions Study (CSIS) Block-11 site automated weather station and associated soil substation at several temporal scales. Precipitation data are collected at 1-second frequency during rain events, air temperature and wind are summarized every 5-minutes, and all aboveground sensors are summarized at 30-minute, hourly and daily frequencies. Soil moisture is measured at a 30-minute frequency and summarized daily. Observed values include average/maximum/minimum air temperature, relative humidity, and wind speed; average wind direction; soil moisture, temperature and conductivity. Aboveground sensors are measured and calculated based on 1-second scan rate. Soil moisture is measured every 30-minutes near the weather station and approximately 30-meters distance at a nearby substation. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximately 2.5m. Soil sensors are installed at 10, 20 and 30cm depths.
Meteorology and soil moisture data collected at multiple frequencies from the Cross-scale Interactions Study (CSIS) Block-12 site automated monitoring stations: Jornada Basin LTER, 2013 - ongoing
This dataset contains summary data collected at the Jornada Basin LTER program's Cross Scale Interactions Study (CSIS) Block-12 site automated weather station and associated soil substation at several temporal scales. Air temperature and wind are summarized every 5-minutes, and all aboveground sensors are summarized at 30-minute, hourly and daily frequencies. Soil moisture is measured at a 30-minute frequency and summarized daily. Observed values include average/maximum/minimum air temperature, relative humidity, and wind speed; average wind direction; soil moisture, temperature and conductivity. Aboveground sensors are measured and calculated based on 1-second scan rate. Soil moisture is measured every 30-minutes near the weather station and approximately 30-meters distance at a nearby substation. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximately 2.5m. Soil sensors are installed at 10, 20 and 30cm depths. The nearest precipitation data is available from CSIS Block-13 site automated weather station located 290m distance.
Meteorology and soil moisture data collected at multiple frequencies from the Cross-scale Interactions Study (CSIS) Block-13 site automated monitoring stations: Jornada Basin LTER, 2013 - ongoing
This dataset contains summary data collected at the Jornada Basin LTER program's Cross Scale Interactions Study (CSIS) Block-13 site automated weather station and associated soil substation at several temporal scales. Precipitation data are collected at 1-second frequency during rain events, air temperature and wind are summarized every 5-minutes, and all aboveground sensors are summarized at 30-minute, hourly and daily frequencies. Soil moisture is measured at a 30-minute frequency and summarized daily. Observed values include average/maximum/minimum air temperature, relative humidity, and wind speed; average wind direction; soil moisture, temperature and conductivity. Aboveground sensors are measured and calculated based on 1-second scan rate. Soil moisture is measured every 30-minutes near the weather station and approximately 30-meters distance at a nearby substation. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximately 2.5m. Soil sensors are installed at 10, 20 and 30cm depths.
Meteorology and soil moisture data collected at multiple frequencies from the Cross-scale Interactions Study (CSIS) Block-14 site automated monitoring stations: Jornada Basin LTER, 2013 - ongoing
This dataset contains summary data collected at the Jornada Basin LTER program's Cross Scale Interactions Study (CSIS) Block-14 site automated weather station and associated soil substation at several temporal scales. Precipitation data are collected at 1-second frequency during rain events, air temperature and wind are summarized every 5-minutes, and all aboveground sensors are summarized at 30-minute, hourly and daily frequencies. Soil moisture is measured at a 30-minute frequency and summarized daily. Observed values include average/maximum/minimum air temperature, relative humidity, and wind speed; average wind direction; soil moisture, temperature and conductivity. Aboveground sensors are measured and calculated based on 1-second scan rate. Soil moisture is measured every 30-minutes near the weather station and approximately 30-meters distance at a nearby substation. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximately 2.5m. Soil sensors are installed at 10, 20 and 30cm depths.
Meteorology and soil moisture data collected at multiple frequencies from the Cross-scale Interactions Study (CSIS) Block-15 site automated monitoring stations: Jornada Basin LTER, 2013 - ongoing
This dataset contains summary data collected at the Jornada Basin LTER program's Cross Scale Interactions Study (CSIS) Block-15 site automated weather station and associated soil substation at several temporal scales. Precipitation data are collected at 1-second frequency during rain events, air temperature and wind are summarized every 5-minutes, and all aboveground sensors are summarized at 30-minute, hourly and daily frequencies. Soil moisture is measured at a 30-minute frequency and summarized daily. Observed values include average/maximum/minimum air temperature, relative humidity, and wind speed; average wind direction; soil moisture, temperature and conductivity. Aboveground sensors are measured and calculated based on 1-second scan rate. Soil moisture is measured every 30-minutes near the weather station and approximately 30-meters distance at a nearby substation. Wind speed is measured at 37cm, 75 cm, 150 cm, and 300 cm, wind direction at approximately 3m, and air temperature and relative humidity at approximately 2.5m. Soil sensors are installed at 10, 20 and 30cm depths.
Interactions between plants and fungi and their roles in decay rates and CO2 release in five tropical leaf species
A microcosm experiment was used to test for the effects of interactions between particular plant and fungal decomposer species on rates of leaf decomposition. Each microcosm contained one species of leaf that was sterilized with gamma irradiation and then inoculated with a single fungus. Five plant species and ten fungal species (two dominants from each of the litter types) were used in all possible combinations. Plant species were selected for pair-wise comparisons based on phylogenetic relationships and litter quality characteristics. Decomposition was measured by both mass loss and CO2 release. Differences in weight loss and CO2 evolution were highly significant for plants, fungal species, and their interactions. Mass loss was positively correlated with CO2 evolution. Contrary to our hypotheses, however, microfungal dominants did not decompose their source leaves faster than microfungal dominants from other leaf species, nor were responses to other types of specificity detected. Matching of fungi to leaf substrates by their source, by phylogenetic relationships, or by chemical, physical and structural characteristics was not associated with consistent increases in decomposition. Although previously documented differences in microfungal species composition and dominance among decomposing leaves of different trees were confirmed in this study, such differences apparently do not directly affect the rates of ecosystem processes. The presence in a few of the microcosms of a generalist basidiomycete that had ligninolytic enzymes, Melanotus eccentricus, significantly accelerated the rate of decomposition. Non-specific basidiomycetes may therefore have a stronger effect on early stages of leaf litter decomposition than host-selective microfungi. Support for this work was provided by grants BSR-8811902, DEB-9411973, DEB-9705814 , DEB-0080538, DEB-0218039 , DEB-0620910 , DEB-1239764, DEB-1546686, and DEB-1831952 from the National Science Foundation to the University of Pue
STREAMS Project: Emergent landscape patterns in stream ecosystem processes resulting from groundwater/surface water interactions
This Data Set is hosted by the Luquillo LTER Program (LUQ) and owned by a LUQ's investigator. Our primary objective is to understand the linkage between surface-subsurface water interactions and ecosystem processes in neotropical lowland streams over an extended time frame (>25 yrs). Proposed research will occur at La Selva Biological Reserve in Costa Rica, which is owned and operated by the Organization for Tropical Studies In tectonically active regions of Central America, it is common for solute-rich groundwater to emerge at gradient breaks within the complex volcanic topography of mountains and foothills which intergrade with the coastal plain. These groundwaters can significantly influence solute chemistry and related ecological and ecosystem-level processes in receiving surface waters. Many solute-rich groundwaters are associated with underlying volcanic activity which has altered the chemistry of receiving streams throughout Central America. Geothermally-modified groundwaters, surfacing at the gradient break between the Central Mountain range and the coastal plain at La Selva Biological Station, have high levels of P (up to 400 mg SRP L-1) and other solutes (Ca, Cl, Mg, SO4) but are not elevated in temperature. Spatial patterns in stream solute chemistry are determined by geomorphic features of the volcanic landscape that include: upland lavas drained by P-poor streams; a gradient break (~50 m.a.s.l.), at or near where P-rich springs emerge; and lowland alluvial areas drained by streams that are both P-rich and P-poor depending on whether they receive the input of solute-rich springs. Our project is the first to determine long-term effects of nutrient enrichment in a detrital-based stream within the wet tropics. We will continue to build upon our long-term(1988-present) data set on stream solute chemistry, which is the only one that we are aware of for lowland primary rainforest of Central America. The proposed project will build on 18 years of past resear
fungal interactions during tropical leaf decomposition
Fungal interactions during leaf decomposition can facilitate or inhibit other fungi. This experiment focused on whether preconditioning of leaf litter by microfungi that were confined to one leaf (Unit-Restricted) made leaf litter less likely to be colonized and decomposed by basidiomycetes that bind litter into mats (Non-Unit- Restricted) than non-preconditioned litter. Leaves of Manilkara bidentata in litterbags were preconditioned by incubating them for 0, 1, 2 or 3 months in flat litter/seed rain baskets 10 centimeters above the forest forest floor to avoid colonization by basidiomycete fungi. Preconditioned and non-preconditioned leaves were transferred to 5 replicate basidiomycete fungal mats of Gymnopus johnstonii for 6 weeks. Both attachment by basidiomycete fungi and percent mass loss after 6 weeks decreased significantly with increasing preconditioning time. In non-preconditioned leaves, gamma irradiation did not affect mass loss or percent white-rot despite having significantly increased numbers of basidiomycete fungal connections as compared to non-irradiated leaves. In non-preconditioned leaves, more basidiomycete attachments to non-irradiated than irradiated leaves suggest facilitation by phyllosphere microfungi. While basidiomycete colonization was initially facilitated by phyllosphere fungi, we inferred that degradation of resource quality led to fewer fungal attachments and less mass loss after 1-3 months of preconditioning by microfungi. There is a 1-month time window for basidiomycete fungi to incorporate fallen leaves into their litter mats. Support for this work was provided by grants BSR-8811902, DEB-9411973, DEB-9705814 , DEB-0080538, DEB-0218039 , DEB-0620910 , DEB-1239764, DEB-1546686, and DEB-1831952 from the National Science Foundation to the University of Puerto Rico as part of the Luquillo Long-Term Ecological Research Program. Additional support provided by the University of Puerto Rico and the International Institute of Tropical Forest
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.