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114 results for “leaf feeding”
Data from: Comparing the effectiveness of metagenomics and metabarcoding for diet analysis of a leaf-feeding monkey (Pygathrix nemaeus)
Fecal samples are of great value as a non-invasive means to gather information on the genetics, distribution, demography, diet, and parasite infestation of endangered species. Direct shotgun sequencing of fecal DNA could give information on these simultaneously, but this approach is largely untested. Here we use two fecal samples to characterize the diet of two Red-Shanked Doucs Langurs (Pygathrix nemaeus) that were fed a known combination of foliage, fruits, vegetables and cereals. Illumina HiSeq sequencing produced ~70 million paired reads per sample, of which ~10000 (0.014%) and ~44000 (0.066%) respectively corresponded to chloroplast genomes. Sequences were matched against a database of available chloroplast 'barcodes' for angiosperms. The results were compared with 'metabarcoding' using PCR amplification of the P6 loop of trnL. Shotgun sequencing identified 7 and 9 of the likely 16 diet plants, against 6 and 5 plant species identified by metabarcoding. Metabarcoding produced thousands of reads that were consistent with the known diet, but the barcodes were too short to identify several diet plants to genus. Metagenomics could utilize multiple, longer barcodes that combined had greater power of identification, but rare diet items were not recovered. Read numbers for diet species in metagenomic and metabarcoding data were correlated, indicating that both approaches are useful for determining relative sequence abundance. Metagenomic reads were uniformly distributed across the chloroplast genomes; thus if chloroplast genomes were to be used as reference, the precision of identifications and species recovery would improve further. Metagenomics also recovered the host mitochondrial genome and numerous intestinal parasite sequences in addition to generating data useful for characterizing the microbiome.
FIGURES 14–16 in The first description of the leaf-mining Nepticulidae (Lepidoptera) feeding on the South American plant genus Liabum, Asteraceae
FIGURES 14–16. Female genitalia of Stigmella serpentina sp. nov., paratype, slide no. AD704.
Unpublished data on two leaf beetles feeding and laying eggs on two willow species
<p>The data were collected during controlled greenhouse experiments in Uppsala, Sweden. Two leaf beetle species were individually or jointly released on either of two willow species. The locations of egg laying and feeding on the shoot and on the leaves was recorded.</p> <p>The experiments were performed by the student Kawshar Sharmin and part of the data have been analysed and published in her master thesis.</p>
Figure 23 from: Liu T, Wang S (2017) First report of the leaf-mining genus Antispila Hübner, [1825] from mainland China, with the description of a new species feeding on Cornus (Lepidoptera, Heliozelidae). ZooKeys 686: 95-107. https://doi.org/10.3897/zookeys.686.13680
Figure 23 - Neighbor-joining tree estimated from DNA barcode sequences under dataset "DS-ANTISIN", performed by using Kimura 2-Parameter model. Clades representing A. sinensis sp. n. are marked blue.
Figures 13-14 from: Liu T, Wang S (2017) First report of the leaf-mining genus Antispila Hübner, [1825] from mainland China, with the description of a new species feeding on Cornus (Lepidoptera, Heliozelidae). ZooKeys 686: 95-107. https://doi.org/10.3897/zookeys.686.13680
Figures 13-14 Pupa of Antispila sinensis sp. n. 13 a white early stage pupa 14 pupa just before emergence in ventral, lateral, and dorsal view.
Figures 8-12 from: Liu T, Wang S (2017) First report of the leaf-mining genus Antispila Hübner, [1825] from mainland China, with the description of a new species feeding on Cornus (Lepidoptera, Heliozelidae). ZooKeys 686: 95-107. https://doi.org/10.3897/zookeys.686.13680
Figures 8-12 Larval chaetotary of Antispila sinensis sp. n. 8 Head lateral view 9 Head front view 10 Thorax 11 Abdomen 12 A10 dorsal and ventral view.
Figures 7 from: Liu T, Wang S (2017) First report of the leaf-mining genus Antispila Hübner, [1825] from mainland China, with the description of a new species feeding on Cornus (Lepidoptera, Heliozelidae). ZooKeys 686: 95-107. https://doi.org/10.3897/zookeys.686.13680
Figures 7 - Final instar larva in leaf-mine, showing sclerotized plate and granules on the body, registered No. SDNU_JN150907.
Figures 15-22 from: Liu T, Wang S (2017) First report of the leaf-mining genus Antispila Hübner, [1825] from mainland China, with the description of a new species feeding on Cornus (Lepidoptera, Heliozelidae). ZooKeys 686: 95-107. https://doi.org/10.3897/zookeys.686.13680
Figures 15-22 Leaf mine, host plant and shield of Antispila sinensis sp. n. 15 Leaf mines on Cornus walteri16 A large blotch mine occupied by two larvae one of which has made a cut-out 17 piercing scar on the disc of a leaf indicated by a red arrow 18 piercing scar (red arrow) near margin of a leaf where callus also occurs (blue arrow) 19 Early linear mine with an active larva 20 Larva in freshly made shield, searching for a pupation site on the ground 21 Shield without spines along margin, pupal exuviae and exuviae of prepupa (red arrow) 22 Shield with several spines along margin, pupal exuviae.
Figures 1-3 from: Liu T, Wang S (2017) First report of the leaf-mining genus Antispila Hübner, [1825] from mainland China, with the description of a new species feeding on Cornus (Lepidoptera, Heliozelidae). ZooKeys 686: 95-107. https://doi.org/10.3897/zookeys.686.13680
Figures 1-3 Adult and wing venation of Antispila sinensis sp. n. 1 Adult, paratype, male, BXS130941 2 Adult, paratype, female, SDNU_JN150947 3 Wing venation, female, slide No. LTT12874W, paratype.
Figures 4-6 from: Liu T, Wang S (2017) First report of the leaf-mining genus Antispila Hübner, [1825] from mainland China, with the description of a new species feeding on Cornus (Lepidoptera, Heliozelidae). ZooKeys 686: 95-107. https://doi.org/10.3897/zookeys.686.13680
Figures 4-6 Genitalia of Antispila sinensis sp. n. 4 Male genitalia in situ, slide No. LTT12873, paratype 5 Male genitalia unrolled, slide No. LTT12872, paratype, red arrow referring to the region of the vinculum adjacent to the triangular median protrusion 5a Close-up of comb teeth on pecten, slide No. LIU15003 6 Female genitalia, slide No. LTT12875, paratype 6a Close-up of ovipositor tip, same slide as in Fig. 6.
Figures 9-10 from: Wang N, Liu T, Xu J, Jiang B (2018) The leaf-mining genus Antispila Hübner, 1825 feeding on Vitaceae in Shandong Peninsula, China with one new species (Lepidoptera, Heliozelidae). ZooKeys 744: 49-65. https://doi.org/10.3897/zookeys.744.22421
Figures 9-10 Wing venation of Antispila species. 9 A. kunyuensis, paratype, female, SDNU.LIU0013 10 A. uenoi, male, SDNU.LIU0012.
Figures 30-32 from: Wang N, Liu T, Xu J, Jiang B (2018) The leaf-mining genus Antispila Hübner, 1825 feeding on Vitaceae in Shandong Peninsula, China with one new species (Lepidoptera, Heliozelidae). ZooKeys 744: 49-65. https://doi.org/10.3897/zookeys.744.22421
Figures 30-32 Female genitalia of Antispila uenoi. 30 female genitalia, SDNU.LIU0043 31 posterior apophyses and ovipositor tip, same slide as 30 32 detail of ovipositor tip, same slide as 30.
Figures 34-41 from: Wang N, Liu T, Xu J, Jiang B (2018) The leaf-mining genus Antispila Hübner, 1825 feeding on Vitaceae in Shandong Peninsula, China with one new species (Lepidoptera, Heliozelidae). ZooKeys 744: 49-65. https://doi.org/10.3897/zookeys.744.22421
Figures 34-41 Host plant and leaf-mines of Antispila species. 34–38 A. kunyuensis 34 Host plant, Ampelopsis humulifolia 35 unripe fruits of A. humulifolia 36–38 leaf-mines 39–41 A. uenoi 39 Host plant, Vitis amurensis 40 leaf-mines along leaf margin, indicated by red arrows 41 leaf-mine with a dead larva.
Figures 26-29 from: Wang N, Liu T, Xu J, Jiang B (2018) The leaf-mining genus Antispila Hübner, 1825 feeding on Vitaceae in Shandong Peninsula, China with one new species (Lepidoptera, Heliozelidae). ZooKeys 744: 49-65. https://doi.org/10.3897/zookeys.744.22421
Figures 26-29 Female genitalia of Antispila kunyuensis. 26 female genitalia, SDNU.LIU0016 27 female genitalia, SDNU.LIU0013 28 detail of ovipositor tip, same slide as 26 29 detail of vestibulum, same slide as 26.
Figures 19-25 from: Wang N, Liu T, Xu J, Jiang B (2018) The leaf-mining genus Antispila Hübner, 1825 feeding on Vitaceae in Shandong Peninsula, China with one new species (Lepidoptera, Heliozelidae). ZooKeys 744: 49-65. https://doi.org/10.3897/zookeys.744.22421
Figures 19-25 Male genitalia of Antispila uenoi. 19–23 SDNU.LIU0011 19 tegumen and vinculum, 20 valva 21 enlarged view of comb 22 tegumen 23 phallus, lateral view 24 enlarged view of spines on base of juxta, SDNU.LIU0012 25 same part as 24 under a shallow focus.
Figures 16-18 from: Wang N, Liu T, Xu J, Jiang B (2018) The leaf-mining genus Antispila Hübner, 1825 feeding on Vitaceae in Shandong Peninsula, China with one new species (Lepidoptera, Heliozelidae). ZooKeys 744: 49-65. https://doi.org/10.3897/zookeys.744.22421
Figures 16-18 Male genitalia and abdomen of Antispila uenoi. 16 whole male genitalia, unrolled, SDNU.LIU0015 17 abdomen, ventral view, notice the tuft of slender scales on the 7th segment, left tuft detached, same slide as 16 18 enlarged view of tuft of slender scales, same slide as 16.
Figure 33 from: Wang N, Liu T, Xu J, Jiang B (2018) The leaf-mining genus Antispila Hübner, 1825 feeding on Vitaceae in Shandong Peninsula, China with one new species (Lepidoptera, Heliozelidae). ZooKeys 744: 49-65. https://doi.org/10.3897/zookeys.744.22421
Figure 33 Neighbor Joining Tree, based on DNA barcodes of Antispila species, especially Vitaceae-feeding and Asian species.
Figures 42-49 from: Wang N, Liu T, Xu J, Jiang B (2018) The leaf-mining genus Antispila Hübner, 1825 feeding on Vitaceae in Shandong Peninsula, China with one new species (Lepidoptera, Heliozelidae). ZooKeys 744: 49-65. https://doi.org/10.3897/zookeys.744.22421
Figures 42-49 Leaf-mines of Antispila species. 42–45 A. kunyuensis, fig. 42 is the identical mine to Fig. 37, one dead larva and a parasitoid, most likely a species of Eulophidae in Figure 45 46–49 A. uenoi, leaf-mines occupying leaf serration and apical area in Figures 46–48, leaf-mine occupying leaf basal area in Figure 49.
Figures 1-8 from: Wang N, Liu T, Xu J, Jiang B (2018) The leaf-mining genus Antispila Hübner, 1825 feeding on Vitaceae in Shandong Peninsula, China with one new species (Lepidoptera, Heliozelidae). ZooKeys 744: 49-65. https://doi.org/10.3897/zookeys.744.22421
Figures 1-8 Adult of Antispila species. 1 A. kunyuensis, holotype, male, SDNU.QD170705.1 2 A. kunyuensis sp. n., paratype, female, SDNU.YT170601.4 3 A. uenoi, male, SDNU.QD170705.1 4 A. uenoi, female, SDNU.QD170705.3 5 A. uenoi, female, SDNU.QD170707 6 A. kunyuensis, male, paratype, ventral view of forewing indicating bristles of retinaculum, SDNU.YT170601.3 7 A. uenoi, ventral view of forewing indicating bristles of retinaculum 8 A. uenoi, male, indicating paired tufts of slender scales on the 7th abdominal segment, photographed during dissection in water, SDNU.QD170705.1. Scale bars: 1.0 mm.
Figures 11-15 from: Wang N, Liu T, Xu J, Jiang B (2018) The leaf-mining genus Antispila Hübner, 1825 feeding on Vitaceae in Shandong Peninsula, China with one new species (Lepidoptera, Heliozelidae). ZooKeys 744: 49-65. https://doi.org/10.3897/zookeys.744.22421
Figures 11-15 Male genitalia of Antispila kunyuensis. 11 whole genitalia, SDNU.LIU0014 12 tegumen, SDNU.LIU0009 13 valva, same slide as 12 14 phallus, lateral view, SDNU.LIU0044 15 enlarged distal part of phallus, same slide as 14.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.