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Dataset results
77 results for “light interaction”
Coordinated regulation of Arabidopsis microRNA biogenesis and red light signaling through Dicer-like 1 and phytochrome-interacting factor 4
GEO Series GSE109038. Arabidopsis thaliana. 6 samples. Type: Non-coding RNA profiling by high throughput sequencing.
Cryptochromes interact directly with PIFs to control plant growth in limiting blue light
GEO Series GSE59699. Arabidopsis thaliana. 36 samples. Type: Expression profiling by high throughput sequencing.
Data from: Specialist insect herbivore and light availability do not interact in the evolution of an invasive plant
Release from specialist insect herbivores may allow invasive plants to evolve traits associated with decreased resistance and increased competitive ability. Given that there may be genetic trade-off between resistance and tolerance, invasive plants could also become more tolerant to herbivores. Although it is widely acknowledged that light availability affects tolerance to herbivores, little information is available for whether the effect of light availability on tolerance differ between the introduced and native populations. We conducted a common garden experiment in the introduced range of Alternanthera philoxeroides using ten invasive US and ten native Argentinean populations at two levels of light availability and in the presence or absence of a specialist stem-boring insect Agasicles hygrophila. Plant biomass (total and storage root biomass), two allocation traits (root/shoot ratio and branch intensity, branches biomass/main stem biomass) and two functional traits (specific stem length and specific leaf area), which are potentially associated with herbivore resistance and light capture, were measured. Overall, we found that A. philoxeroides from introduced ranges had comparable biomass and tolerance to specialist herbivores, lower branch intensity, lower specific stem length and specific leaf area. Moreover, introduced populations displayed higher shade tolerance of storage root biomass and lower plastic response to shading in specific stem length. Finally, light availability had no significant effect on evolution of tolerance to specialist herbivores of A. philoxeroides. Our results suggest that post-introduction evolution might have occurred in A. philoxeroides. While light availability did not influence the evolution of tolerance to specialist herbivores, increased shade tolerance and release from specialist insects might have contributed to the successful invasion of A. philoxeroides.
Data from: Phenotypic interactions between tree hosts and invasive forest pathogens in the light of globalization and climate change
Invasive pathogens can cause considerable damage to forest ecosystems. Lack of coevolution is generally thought to enable invasive pathogens to bypass the defence and/or recognition systems in the host. Although mostly true, this argument fails to predict intermittent outcomes in space and time, underlining the need to include the roles of the environment and the phenotype in host–pathogen interactions when predicting disease impacts. We emphasize the need to consider host–tree imbalances from a phenotypic perspective, considering the lack of coevolutionary and evolutionary history with the pathogen and the environment, respectively. We describe how phenotypic plasticity and plastic responses to environmental shifts may become maladaptive when hosts are faced with novel pathogens. The lack of host–pathogen and environmental coevolution are aligned with two global processes currently driving forest damage: globalization and climate change, respectively. We suggest that globalization and climate change act synergistically, increasing the chances of both genotypic and phenotypic imbalances. Short moves on the same continent are more likely to be in balance than if the move is from another part of the world. We use Gremmeniella abietina outbreaks in Sweden to exemplify how host–pathogen phenotypic interactions can help to predict the impacts of specific invasive and emergent diseases. This article is part of the themed issue 'Tackling emerging fungal threats to animal health, food security and ecosystem resilience'.
Casting Light on HOst-cytomegaloviRUs Interaction in Solid Organ Transplantation
ClinicalTrials.gov study NCT05701228. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Effects of gene-by-environment interaction on the mRNA profile in the light of differential susceptibility
GEO Series GSE109929. Mus musculus. 48 samples. Type: Expression profiling by high throughput sequencing.
Data from: Phenotypic interactions between tree hosts and invasive forest pathogens in the light of globalization and climate change
Open the record for dataset details and reuse information.
Data from: Specialist insect herbivore and light availability do not interact in the evolution of an invasive plant
Open the record for dataset details and reuse information.
Cryptochromes interact directly with PIFs to control plant growth in limiting blue light
GEO Series GSE68193. Arabidopsis thaliana. 13 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Phytochrome Interacting Factors 4 and 5 redundantly limit seedling de-etiolation in continuous far-red light.
GEO Series GSE16333. Arabidopsis thaliana. 18 samples. Type: Expression profiling by array.
PCV2 Infection Represses the Differentiation of Light Zone Germinal Center B Cells by Inhibiting Their Interaction with Helper Cells
GEO Series GSE287481. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
Phytochrome Interacting Factor 4 and 5 regulate different set of genes in high and low red/far-red light
GEO Series GSE35057. Arabidopsis thaliana. 24 samples. Type: Expression profiling by array.
The blue light receptor CRY1 interacts with FIP37 to promote N6-methyladenosine RNA modification and photomorphogenesis in Arabidopsis
GEO Series GSE211540. Arabidopsis thaliana. 24 samples. Type: Other.
Interaction between the light environment and the Arabidopsis wound response
GEO Series GSE13803. Arabidopsis thaliana. 12 samples. Type: Expression profiling by array.
Effects of gene-by-environment interaction in light of differential susceptibility
GEO Series GSE109930. Mus musculus. 90 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Mucosal immune and stress responses of Neoparamoeba perurans-infected Atlantic salmon (Salmo salar) treated with peracetic acid shed light on the host-parasite-oxidant interactions
GEO Series GSE211350. Salmo salar. 72 samples. Type: Expression profiling by array.
A light signaling factor, ELONGATED HYPOCOTYL 5 (HY5) interacts with Histone deacetylase 9 (HDA9) to play a suppressive role in the glucosinolate biosynthesis in Arabidopsis
GEO Series GSE250418. Arabidopsis thaliana. 6 samples. Type: Expression profiling by high throughput sequencing.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.