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155 results for “multilocus phylogeny”
Figure 5 in The story of a rock-star: multilocus phylogeny and species delimitation in the starred or roughtail rock agama, Laudakia stellio (Reptilia: Agamidae)
Figure 5. Multilocus calibrated species-tree produced by StarBEAST2. Numbers above branches represent mean divergence times (Myr), while numbers below represent posterior probabilities. Asterisks represent posterior probabilities equal to 1. (Agama spp. contains Agama agama, A. boensis, A. bottega, A. boueti, A. boulengeri, A. impalearis, A. planices, A. sankaranica and A. spinosa).
Figure 4 in The story of a rock-star: multilocus phylogeny and species delimitation in the starred or roughtail rock agama, Laudakia stellio (Reptilia: Agamidae)
Figure 4. Phylogenetic tree based on the concatenated dataset (mtDNA & nuDNA). Bayesian posterior probabilities (PP) and maximum likelihood bootstrap support (bs) values are represented in the form PP/bs above or beside nodes. (Agama spp. contains Agama agama, A. boensis, A. bottega, A. boueti, A. boulengeri, A. impalearis, A. planices, A. sankaranica and A. spinosa).
Figure 3 in The story of a rock-star: multilocus phylogeny and species delimitation in the starred or roughtail rock agama, Laudakia stellio (Reptilia: Agamidae)
Figure 3. Map showing the sampling localities of specimens used in the present study. Different colours represent the phylogenetic subclades indicated in Figures 2 and 4.
Figure 2 in The story of a rock-star: multilocus phylogeny and species delimitation in the starred or roughtail rock agama, Laudakia stellio (Reptilia: Agamidae)
Figure 2. Phylogenetic tree based on mtDNA (ND4-tRNAs and 16S rRNA). Bayesian posterior probabilities (PP) and maximum likelihood bootstrap support (bs) values are represented in the form PP/bs above or beside nodes. (Agama spp. contains Agama agama, A. boensis, A. bottega, A. boueti, A. boulengeri, A. impalearis, A. planices, A. sankaranica and A. spinosa).
Figure 1 in The story of a rock-star: multilocus phylogeny and species delimitation in the starred or roughtail rock agama, Laudakia stellio (Reptilia: Agamidae)
Figure 1. Map showing the distribution of all known morphological subspecies of Laudakia stellio in the East Mediterranean.
Figure 4 in Multilocus phylogeny, natural history traits and classification of natricine snakes (Serpentes: Natricinae)
Figure 4. Best shift configuration sampled by Bayesian analysis of macroevolutionary mixtures (BAMM) for the natricine phylogeny. Colours along the branches represent instantaneous rates of speciation, and the red circles represent shifts in the diversification regimes. These shifts are on branches leading to the North and Central American group (upper red circle) and one of the major Asian clades (lower red circle). For complete phylogeny, see Figure 2. For complete geographical distribution information, see Figure 6.
Figure 6 in Multilocus phylogeny, natural history traits and classification of natricine snakes (Serpentes: Natricinae)
Figure 6. Geographical distribution and the three natural history traits plotted onto the dated natricine phylogeny (see Fig. 2). Abbreviation: NA, no information available (open bars).
Figure 3 in Multilocus phylogeny, natural history traits and classification of natricine snakes (Serpentes: Natricinae)
Figure 3. Ancestral area estimations (DEC+j model) of natricines. Coloured boxes at tips indicate the current distribution of extant species. For the complete estimated dates at each node, see the Supporting Information (Fig. S1).
Figure 5 in Multilocus phylogeny, natural history traits and classification of natricine snakes (Serpentes: Natricinae)
Figure 5. Mean speciation rates through time from Bayesian analysis of macroevolutionary mixtures (BAMM). A, Americas. B, sub-Saharan Africa (including Seychelles). C, South, East and Southeast Asia and Australo-Melanesia. D, Europe, North Africa and Central Asia.
Figure 1 in Multilocus phylogeny, natural history traits and classification of natricine snakes (Serpentes: Natricinae)
Figure 1. Global distribution of natricine snakes. Broad areas of distribution in different regions of the world are coloured and labelled. Important biogeographical regions used in the analysis are highlighted with borders of different colours.
Figure 2 in Multilocus phylogeny, natural history traits and classification of natricine snakes (Serpentes: Natricinae)
Figure 2. Maximum likelihood (ML) tree showing inferred relationships among natricine snakes. Maximum likelihood bootstrap support (BS) and Bayesian posterior probability (PP) values are shown at each internal branch. Posterior probability values <0.75 and BS values <75 are not shown. Tips for which sequence data were newly generated in the present study are shown in bold.
Fig. 5 in Multilocus Phylogeny Support the Nonbioluminescent Firefly Chespirito as a New Subfamily in the Lampyridae (Coleoptera: Elateroidea)
Fig. 5. Morphological Structures of Chespirito zaragozai. (A) Dorsal view of head. (B) Dorsal view of metaventrite and metendosternite. (C)Thorax in ventral and dorsal view. (D) Metaleg. Abbreviations: CC: Coxal cavity; MET: Metendosternite; MSA: Mesanepisternum; MEM: Membranous tissue; MSS: Mesoscutum; MSV: Mesoventrite; MTA: Metanepisternum; MTE: Metepimeron. MTD: Metadiscrimen; MTS: Metascutum; MTV: Metaventrite; PRO: Pronotum; PS: Prosternum; SCU: Scutellar shield;TER:Tergite I; TIB:Tibia;VLF:Ventral longitudinal flange.
Fig. 8 in Multilocus Phylogeny Support the Nonbioluminescent Firefly Chespirito as a New Subfamily in the Lampyridae (Coleoptera: Elateroidea)
Fig. 8. Phylogenetic hypothesis for the placement of Chespirito in Lampyridae resulting from the BI and the ML analysis of the concatenated MAFFT alignment of four molecular markers (18S rRNA, 28S rRNA, rrnL mtDNA, and cox1 mtDNA). Numbers in the branches represent PP and ultrafast bootstrap (UFBoot), respectively. Only subfamilial relationships with support values ≥ 95% are indicated, except the relations within Chespirito's clade.
Fig. 3 in Multilocus Phylogeny Support the Nonbioluminescent Firefly Chespirito as a New Subfamily in the Lampyridae (Coleoptera: Elateroidea)
Fig. 3. Lateral habitus of Chespirito species. (A) C. ballantyneae. (B) C. lloydi. (C) C. zaragozai. Scale bars: 1 mm.
Fig. 4 in Multilocus Phylogeny Support the Nonbioluminescent Firefly Chespirito as a New Subfamily in the Lampyridae (Coleoptera: Elateroidea)
Fig. 4. Frons of Chespirito species. (A) C. ballantyneae. (B) C. lloydi. (C) C. zaragozai. Scale bars: 0.1 mm.
Fig. 6 in Multilocus Phylogeny Support the Nonbioluminescent Firefly Chespirito as a New Subfamily in the Lampyridae (Coleoptera: Elateroidea)
Fig. 6. Male genitalia, ventral and dorsal view. (A) C. ballantyneae. (B) C. lloydi. (C) C. zaragozai. Ventrite VIII apex of males. (D) C. ballantyneae. (E) C. lloydi. (F) C. zaragozai.
Supplementary material 1 from: Huang C, Lee Y, Lin S, Wu W (2014) Taxonomic revision of Aegista subchinensis (Möllendorff, 1884) (Stylommatophora, Bradybaenidae) and a description of a new species of Aegista from eastern Taiwan based on multilocus phylogeny and comparative morphology. ZooKeys 445: 31-55. https://doi.org/10.3897/zookeys.445.7778
Gene trees of maximum likelihood and Bayesian inference and the morphological measurements of Aegista diversifamilia sp. n. and Aegista subchinensis.: Explanation note: Figure S1. Maximum likelihood phylogeny of mitochondrial COI gene. Branch support confidences are shown in bootstrap and approximate likelihood-ratio test. Figure S2. Maximum likelihood phylogeny of mitochondrial 16S gene. Branch support confidences are shown in bootstrap and approximate likelihood-ratio test. Figure S3. Maximum likelihood phylogeny of nuclear ITS2 gene. Branch support confidences are shown in bootstrap and approximate likelihood-ratio test. Figure S4. Bayesian phylogeny of mitochondrial COI gene. Figure S5. Bayesian phylogeny of mitochondrial 16S gene. Figure S6. Bayesian phylogeny of nuclear ITS2 gene. Table S1. Morphological measurements of Aegista diversifamilia sp. n. and Aegista subchinensis.
Figure 3 in Multilocus phylogeny and morphological analyses illuminate overlooked diversity of Soriculus (Mammalia: Eulipotyphla: Soricidae), with descriptions of two new endemic species from the eastern Himalayas
Figure 3. Phylogenetic trees of the genus Soriculus based on (A) the concatenated mtDNA and (B) the concatenated nDNA using the ML and BI methods. Node numbers indicate Bayesian posterior probabilities (PP) and ultrafast bootstrap supports (UFBoot).
Figure 4 in Multilocus phylogeny and morphological analyses illuminate overlooked diversity of Soriculus (Mammalia: Eulipotyphla: Soricidae), with descriptions of two new endemic species from the eastern Himalayas
Figure 4. Bayesian phylogenetic tree of genus Soriculus based on the concatenated sequences of 13 mitochondrial PCGs, 12S rRNA, and 16S rRNA genes. Node numbers indicate Bayesian posterior probabilities (PP).
Figure 2 in Multilocus phylogeny and morphological analyses illuminate overlooked diversity of Soriculus (Mammalia: Eulipotyphla: Soricidae), with descriptions of two new endemic species from the eastern Himalayas
Figure 2. Results of the principal components (A) and discriminant function analysis (B) analysis of Soriculus based on the 18 log10- transformed craniomandibular variables.
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International Brain Laboratory public data
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OpenNeuro
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