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82 results for “nuclear DNA sequences”
Plate 3 from: Compton JA, Schrire BD, Könyves K, Forest F, Malakasi P, Mattapha S, Sirichamorn Y (2019) The Callerya Group redefined and Tribe Wisterieae (Fabaceae) emended based on morphology and data from nuclear and chloroplast DNA sequences. PhytoKeys 125: 1-112. https://doi.org/10.3897/phytokeys.125.34877
Plate 3 Wisteriopsis and Wisteria. AWisteriopsisjaponica, Cultivated, J.C.Raulston Arboretum, North Carolina 980008-17 BWisteriopsisjaponica Japan, Honshu near Kyoto G.Lewis, unvouchered C, DWisteriopsisjaponica, Cultivated, J.C.Raulston Arboretum, North Carolina 980008-17 EWisteriopsisreticulata Cultivated, J.Compton s.n.. unvouchered FWisteriafrutescens Cultivated, B.Schrire unvouchered GWisteriabrachybotrys cultivated, B.Schrire unvouchered.
Figure 4 from: Compton JA, Schrire BD, Könyves K, Forest F, Malakasi P, Mattapha S, Sirichamorn Y (2019) The Callerya Group redefined and Tribe Wisterieae (Fabaceae) emended based on morphology and data from nuclear and chloroplast DNA sequences. PhytoKeys 125: 1-112. https://doi.org/10.3897/phytokeys.125.34877
Figure 4 Nanhaiaspeciosa (Champ. ex Benth.) J.Compton & Schrire. A Habit B flower bud with bract and bracteole C calyx exterior and bracteole D detail of calyx exterior E detail of calyx interior F standard petal G wing petal H keel petal I staminal column J staminal column lateral view K stamen ventral and dorsal view L ovary and style M style and stigma N pod O seed lateral view P seed ventral view (all from Shiu Ling Hu 6091). Drawn by Margaret Tebbs.
Figure 2 from: Compton JA, Schrire BD, Könyves K, Forest F, Malakasi P, Mattapha S, Sirichamorn Y (2019) The Callerya Group redefined and Tribe Wisterieae (Fabaceae) emended based on morphology and data from nuclear and chloroplast DNA sequences. PhytoKeys 125: 1-112. https://doi.org/10.3897/phytokeys.125.34877
Figure 2 Distinctive morphological characters in Tribe Wisterieae. AEndosamararacemosa standard petal inner surface BPadbruggeadasyphylla standard petal inner surface CPadbruggeadasyphylla pod DPadbruggeadasyphylla seed lateral view EAustrocalleryaaustralis standard petal inner surface FAustrocalleryapilipes pod GAustrocalleryapilipes seed lateral view HPadbruggeafilipes standard petal IAfgekiasericea standard petal inner surface JAfgekiasericea seed lateral view KAfgekiasericea seed angled lateral view LCalleryanitida pod MCalleryanitida seed ventral view NCalleryanitida seed polar view OCalleryacinerea pod PWhitfordiodendronnieuwenhuisii pod QWhitfordiodendronerianthum seed RWisteriopsiseurybotrya gibbosity SWisteriopsischampionii gibbosity A from Luang Vanpruk 188 B from Scortechini 429 C, D from Lamb 395/91 E from L.J.Brass 32129 F, G from B.Gray 04319 H from Maung Po Khant 15326 I from C. Chermsirivathana 996 J, K from Mrs Collins 104/9 L–N from Theophilus SampsonO from G.Forrest 19279 P from J.P.Mogea 4182 Q from photo Y.Sirichamorn s.n..R from J. & M.S.Clemens 3637 S from Shiu Ying Hu 10476. See Appendix 1 for voucher details. Drawn by Margaret Tebbs.
Supplementary material 1 from: Compton JA, Schrire BD, Könyves K, Forest F, Malakasi P, Mattapha S, Sirichamorn Y (2019) The Callerya Group redefined and Tribe Wisterieae (Fabaceae) emended based on morphology and data from nuclear and chloroplast DNA sequences. PhytoKeys 125: 1-112. https://doi.org/10.3897/phytokeys.125.34877
: Data type: molecular data
Figure 1 from: Compton JA, Schrire BD, Könyves K, Forest F, Malakasi P, Mattapha S, Sirichamorn Y (2019) The Callerya Group redefined and Tribe Wisterieae (Fabaceae) emended based on morphology and data from nuclear and chloroplast DNA sequences. PhytoKeys 125: 1-112. https://doi.org/10.3897/phytokeys.125.34877
Figure 1 Combined Maximum Liklihood (ML) and Bayesian Inference (BI) Phylogenetic tree of Tribe Wisterieae. The tree is derived from the combined plastid and ITS, RAxML bipartitions analysis representing 77 (36) ingroup samples (taxa) and 59 (40) outgroup samples (taxa). The outgroup Schefflerodendron is used to root the trees. Lines in bold on the phylogeny incorporate results from the combined Bayesian Inference analysis, demarcating clades with BPP (0.95) support and above. Nodes are marked up with bootstrap values as percentages derived from the combined ML analysis with values of 50% or less marked in red. The collapsed portion of the tree, below the IRLC and above Schefflerodendron, represents the following genera (see Suppl. material 1: Figs S1–S6): Tribe Robinieae (Coursetia, Gliricidia, Poissonia & Poitea); Tribe Sesbanieae (Sesbania), Tribe Loteae (Coronilla, Lotus & Securigera); Tribe Millettieae (Millettia), Tribe Abreae (Abrus); Tribe Phaseoleae (Clitoria & Ophrestia); Tribe Indigofereae (Phylloxylon) and basal millettioids (Austrosteenisia, Disynstemon, Xeroderris & Platycyamus). Tribe Wisterieae is treated within five clades (Clades A–E), colour coded green for Clade A (Sarcodum, Endosamara & Sigmoidala); cyan for Clade B (Nanhaia & Wisteriopsis), red for Clade C (Callerya, Serawaia, Whitfordiodendron, Kanburia & Afgekia); orange for Clade D (Padbruggea & Austrocallerya) and yellow for Clade E (Wisteria). Each clade is further subdivided to represent the genera (except for the single accession of Serawaia which is incorporated with Whitfordiodendron in Clade C2) and E1 and E2 represent the geographical disjunction of species in Wisteria. Outgroups within the IRLC in purple include Glycyrrhiza, Adinobotrys and representatives of the Temperate Tribe block. The ingroup (IRLC) and Tribe Wisterieae are demarcated with arrows on the tree.
Figure 6 from: Compton JA, Schrire BD, Könyves K, Forest F, Malakasi P, Mattapha S, Sirichamorn Y (2019) The Callerya Group redefined and Tribe Wisterieae (Fabaceae) emended based on morphology and data from nuclear and chloroplast DNA sequences. PhytoKeys 125: 1-112. https://doi.org/10.3897/phytokeys.125.34877
Figure 6 Austrocalleryaaustralis (Endl.) J.Compton & Schrire. A Habit B leaf and detail of leaflet apex C flower buds with bract and 2 bracteoles D flower E calyx external surface F calyx detail of inner surface G standard petal inner surface H wing petal I keel petal J staminal column ventral view K stamens dorsal and ventral views L staminal column lateral view M ovary lateral view N stigma O pod P seed angled lateral view (all from Martin 1392). Drawn by Margaret Tebbs.
Figure 3 from: Compton JA, Schrire BD, Könyves K, Forest F, Malakasi P, Mattapha S, Sirichamorn Y (2019) The Callerya Group redefined and Tribe Wisterieae (Fabaceae) emended based on morphology and data from nuclear and chloroplast DNA sequences. PhytoKeys 125: 1-112. https://doi.org/10.3897/phytokeys.125.34877
Figure 3 Sigmoidalakityana (Craib) J.Compton & Schrire. A Habit B young leaf C lower surface of leaf D leaflet detail of hairs E inflorescence F flower bud with bracteole and pedicel G calyx external surface H standard petal inner surface I wing petal J keel petal K staminal column lateral view L staminal column ventral view M stamen dorsal and ventral views N ovary lateral view O style and stigma P pod Q pod detail of surface R seed ventral view S seed lateral view (all from Clark 245). Drawn by Margaret Tebbs.
Plate 2 from: Compton JA, Schrire BD, Könyves K, Forest F, Malakasi P, Mattapha S, Sirichamorn Y (2019) The Callerya Group redefined and Tribe Wisterieae (Fabaceae) emended based on morphology and data from nuclear and chloroplast DNA sequences. PhytoKeys 125: 1-112. https://doi.org/10.3897/phytokeys.125.34877
Plate 2 Afgekia, Sarcodum and Padbruggea. AAfgekiamahidoliae, Thailand, Sai Yok distr. Kanchanaburi, Y.Sirichamorn s.n.. B, CAfgekiasericea Thailand S.Mattapha 1158DSarcodumscandens Vietnam, Quang Binh Prov. Lôc & Quang P11554EAfgekiamahidiliae Thailand, Sai Yok distr. Kanchanaburi Y.Sirichamorn s.n.. FSarcodumscandens Vietnam, Quang Binh Prov. Lôc & Quang P11554GSarcodumscandens Laos, Sop Teuang, Bolikhamxai Prov. S.Lanorsavanh 1299H, IPadbruggeafilipes Thailand, Chiang Mai, Y.Sirichamorn & S.Mattapha YSM2017-1.
Figure 1 in May a hybridogenetic complex regenerate the nuclear genome of both sexes of a missing ancestor? First evidence on the occurrence of a nuclear non-hybrid Squalius alburnoides (Cyprinidae) female based on DNA sequencing
Figure 1. Minimum spanning network among cytb haplotypes. The majority of the haplotypes (represented by circles) are exclusive of Squalius alburnoides (in grey) and of S. pyrenaicus (in white) individuals, except for the central one which is a haplotype shared between one S. alburnoides and two S. pyrenaicus individuals. NH indicates the haplotype of the non-hybrid female. The number of mutations between haplotypes is represented by small black dots.
Data from: Phylogenetic relationships of Agaric fungi based on nuclear large subunit ribosomal DNA sequences
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Data from: Targeted multiplex next-generation sequencing: Advances in techniques of mitochondrial and nuclear DNA sequencing for population genomics
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Data from: Speciation history of three closely related oak gall wasps, Andricus mukaigawae, A. kashiwaphilus, and A. pseudoflos (Hymenoptera: Cynipidae) inferred from nuclear and mitochondrial DNA sequences
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Data from: Phylogenetic Systematics and Evolution of Primate-Derived Pneumocystis Based on Mitochondrial or Nuclear DNA Sequence Comparison
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Data from: Phylogenetic Systematics and Evolution of Primate-Derived Pneumocystis Based on Mitochondrial or Nuclear DNA Sequence Comparison
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The Enzyme-Like Domain of Arabidopsis Nuclear Beta-Amylases is Critical During DNA Sequence Recognition and Transcriptional Activation
GEO Series GSE58370. Arabidopsis thaliana. 28 samples. Type: Expression profiling by array.
FIGURE 12 in The identity of the Javan Krait, Bungarus javanicus Kopstein, 1932 (Squamata: Elapidae): evidence from mitochondrial and nuclear DNA sequence analyses and morphology
FIGURE 12. Adult male Bungarus candidus (UK B36) from the area of Losarang (Kabupaten Indramayu, West Java, Indonesia) with reduced black bands on the posterior half of the body. Photo by Ulrich Kuch.
FIGURE 3 in The identity of the Javan Krait, Bungarus javanicus Kopstein, 1932 (Squamata: Elapidae): evidence from mitochondrial and nuclear DNA sequence analyses and morphology
FIGURE 3. Ventral view of the type specimen of Bungarus javanicus (RMNH 9007). Photo by Ulrich Kuch.
Fig. 2 in Allopolyploid origin of the Balkan endemic Ranunculus wettsteinii (Ranunculaceae) inferred from nuclear and plastid DNA sequences
Fig. 2 Phylogenetic tree for Ranunculus species based on plastid regions (rpl32-trnL, rps16-trnQ, trnK-matK, ycf6-psbM). a Consensus tree inferred from the two most parsimonious trees (CI=0.76; RI=0.93). Numbers above branches show bootstrap values (3,000 replicates). b
FIGURE 4 in Identification and molecular phylogeny of agriculturally important spider mites (Acari: Tetranychidae) based on mitochondrial and nuclear ribosomal DNA sequences, with an emphasis on Tetranychus
FIGURE 4. ML tree based on ITS1 sequences. Sequence data for the ITS1 was aligned from a total of 23 individuals from nine species. The outgroups Neoseiulus swirskii and Typhlodromus pyri (GenBank nos. EU310505 and FM179376, respectively) were used to root the ITS1 tree. Numbers on the branches indicate the percentage bootstrap values (>50) based on NJ bootstrapping with ML settings (1,000 replicates).
FIGURE 3 in Identification and molecular phylogeny of agriculturally important spider mites (Acari: Tetranychidae) based on mitochondrial and nuclear ribosomal DNA sequences, with an emphasis on Tetranychus
FIGURE 3. Neighbor-joining (NJ) tree (a) and maximum likelihood (ML) tree (b) based on COI sequences. Twentythree of the COI sequences were obtained from the nine Chinese tetranychid species analyzed in this study. In addition, thirteen acarine COI sequences were obtained from the GenBank: the COI sequence (GenBank nos. DQ789590 and AY320029) from Brevipalpus obovatus and Cenopalpus pulcher were used as outgroups; the other COI sequences Tetranychus truncatus, T. turkestani, T. piercei, T. neocaledonicus, Panonychus citri, Pa. ulmi, Pa. mori, Amphitetranychus viennensis, A. quercivorus, Petrobia harti and P. tunisiae (GenBank nos. AB257317, AJ316604, AB257314, X80859, AB041252, AB041253, AB041256, X99875, X99873, EU487121 and EU487119 respectively) from GenBank also included into our phylogenetic analysis. Numbers adjacent to branches show the bootstrap values (> 50%) of 1000 replicates.
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