Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
76
datasets available to search
ShareScore release 0.7.1
Dataset results
76 results for “reference libraries”
Figure 3 from: Yi P, Yu P, Liu J, Xu H, Liu X (2018) A DNA barcode reference library of Neuroptera (Insecta, Neuropterida) from Beijing. ZooKeys 807: 127-147. https://doi.org/10.3897/zookeys.807.29430
Figure 3 Habitus photographs of species of Chrysopidae newly recorded from Beijing. ANothochrysasinica Yang, 1986 BChrysopaintima McLachlan, 1893 CChrysoperlafurcifera (Okamoto, 1914) DChrysopidiaciliata (Wesmael, 1841) EMalladaflavimaculus Yang & Yang, 1991 FPseudomalladacognatellus (Okamoto, 1914) GPseudomalladaqinlingensis (Yang & Yang, 1989) HNinetagrandis Navás, 1915 INinetashaanxiensis Yang & Yang, 1989. Scale bar: 1 mm.
Figure 2 from: Yi P, Yu P, Liu J, Xu H, Liu X (2018) A DNA barcode reference library of Neuroptera (Insecta, Neuropterida) from Beijing. ZooKeys 807: 127-147. https://doi.org/10.3897/zookeys.807.29430
Figure 2 Habitus photographs of species of Coniopterygidae newly recorded from Beijing. AConwentziasinica Yang, 1974 BSemidalisbicornis Liu & Yang, 1993. Scale bar: 1 mm.
Figure 6 from: Yi P, Yu P, Liu J, Xu H, Liu X (2018) A DNA barcode reference library of Neuroptera (Insecta, Neuropterida) from Beijing. ZooKeys 807: 127-147. https://doi.org/10.3897/zookeys.807.29430
Figure 6 Photographs of habitus and genitalia of Pseudomalladaprasinus (Burmeister, 1839). Type A (A–H); type B (I–P); photographs of habitus (A, I); apex of abdomen in male (B, J); apex of abdomen in female (C, K); the complex of gonocoxites, gonapophyses and gonostyli 9, dorsal view (D, L); gonocoxites 10, dorsal view (E, M); spermatheca, lateral view (F, N); labial palps (G, O); maxillary palps (H, P). Scale bar: 1mm (A, I); 0.25 mm (B–F, J–N).
Figure 5 from: Yi P, Yu P, Liu J, Xu H, Liu X (2018) A DNA barcode reference library of Neuroptera (Insecta, Neuropterida) from Beijing. ZooKeys 807: 127-147. https://doi.org/10.3897/zookeys.807.29430
Figure 5 Neighbor-joining tree and result of molecular species delimitation based on COI barcodes. AConiopterygidaeBChrysopidaeCHemerobiidaeDMyrmeleontidae and Ascalaphidae. The terminal nodes in the tree are collapsed for each morphological species, the width of triangles shows the sequence divergence. Only bootstrap supports (1,000 replicates) > 0.95 are labelled.
Data from: Accelerating plant DNA barcode reference library construction using herbarium specimens: improved experimental techniques
A well-covered reference library is crucial for successful identification of species by DNA barcoding. The biggest difficulty in building such a reference library is the lack of materials of organisms. Herbarium collections are potentially an enormous resource of materials. In this study, we demonstrate that it is likely to build such reference libraries using the reconstructed (self-primed PCR amplified) DNA from the herbarium specimens. We used 179 rosaceous specimens to test the effects of DNA reconstruction, 420 randomly sampled specimens to estimate the usable percentage and another 223 specimens of true cherries (Cerasus, Rosaceae) to test the coverage of usable specimens to the species. The barcode rbcLb (the central four-sevenths of rbcL gene) and matK was each amplified in two halves and sequenced on Roche GS 454 FLX+. DNA from the herbarium specimens was typically shorter than 300 bp. DNA reconstruction enabled amplification fragments of 400–500 bp without bringing or inducing any sequence errors. About one-third of specimens in the national herbarium of China (PE) were proven usable after DNA reconstruction. The specimens in PE cover all Chinese true cherry species and 91.5% of vascular species listed in Flora of China. It is very possible to build well-covered reference libraries for DNA barcoding of vascular species in China. As exemplified in this study, DNA reconstruction and DNA-labelled next-generation sequencing can accelerate the construction of local reference libraries. By putting the local reference libraries together, a global library for DNA barcoding becomes closer to reality.
Data from: Accelerating plant DNA barcode reference library construction using herbarium specimens: improved experimental techniques
Open the record for dataset details and reuse information.
Training and Support for Student Library Employees in a Tiered Reference Service Model: Supporting Materials
Open the record for dataset details and reuse information.
FACS validation dataset: An optimized library for reference-based deconvolution of whole-blood biospecimens assayed using the Illumina HumanMethylationEPIC BeadArray (III)
GEO Series GSE112618. Homo sapiens. 6 samples. Type: Methylation profiling by genome tiling array.
Sequencing Universal Human Reference RNA by Smart-seq and early barcoding library preparation methods
GEO Series GSE75823. Homo sapiens. 11 samples. Type: Expression profiling by high throughput sequencing.
FlowSorted.Blood.EPIC: An optimized library for reference-based deconvolution of whole-blood biospecimens assayed using the Illumina HumanMethylationEPIC BeadArray (II)
GEO Series GSE110554. Homo sapiens. 49 samples. Type: Methylation profiling by genome tiling array.
Longitudinal dataset: An optimized library for reference-based deconvolution of whole-blood biospecimens assayed using the Illumina HumanMethylationEPIC BeadArray (I)
GEO Series GSE110530. Homo sapiens. 12 samples. Type: Methylation profiling by genome tiling array.
Data from: A reliable DNA barcode reference library for the identification of the European shelf fish fauna
Valid fish species identification is an essential step both for fundamental science and fisheries management. The traditional identification is mainly based on external morphological diagnostic characters, leading to inconsistent results in many cases. Here, we provide a sequence reference library based on mitochondrial cytochrome c oxidase subunit I (COI) for a valid identification of 93 North Atlantic fish species originating from the North Sea and adjacent waters, including many commercially exploited species. Neighbour-joining analysis based on K2P genetic distances formed nonoverlapping clusters for all species with a ≥99% bootstrap support each. Identification was successful for 100% of the species as the minimum genetic distance to the nearest neighbour always exceeded the maximum intraspecific distance. A barcoding gap was apparent for the whole data set. Within-species distances ranged from 0 to 2.35%, while interspecific distances varied between 3.15 and 28.09%. Distances between congeners were on average 51-fold higher than those within species. The validation of the sequence library by applying BOLDs barcode index number (BIN) analysis tool and a ranking system demonstrated high taxonomic reliability of the DNA barcodes for 85% of the investigated fish species. Thus, the sequence library presented here can be confidently used as a benchmark for identification of at least two-thirds of the typical fish species recorded for the North Sea.
Data from: A reliable DNA barcode reference library for the identification of the European shelf fish fauna
Open the record for dataset details and reuse information.
SuperSeries: An optimized library for reference-based deconvolution of whole-blood biospecimens assayed using the Illumina HumanMethylationEPIC BeadArray
GEO Series GSE110555. Homo sapiens. 67 samples. Type: Methylation profiling by genome tiling array.
Genomic Library Enrichment for n-Butanol tolerance in E. coli. Samples vs Reference
GEO Series GSE26223. Escherichia coli. 16 samples. Type: Expression profiling by array.
Fig. 8 in Glucosinolate profiles and phylogeny in Barbarea compared to other tribe Cardamineae (Brassicaceae) and Reseda (Resedaceae), based on a library of ion trap HPLC-MS/MS data of reference desulfoglucosinolates
Fig. 8. The intraspecific diversity of Barbarea vulgaris and relations to other species in the genus analyzed by parsimony network analysis of ITS regions from Barbarea accessions using SplitsTree (Huson and Briant, 2006). The B. vulgaris ITS sequences are defined as seven groups and detailed accession information is found in Supplementary Table S1. The respective alignment is shown in Supplementary Table S2, and bootstrap values are provided for 1000 replicates.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.