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22,038 results for “relatives”
Data related to the article: Y. Norman et al., Science 365, eaax1030 (2019)
<p>This data set contains intracranial EEG data, analysis code and results associated with the manuscript, "<strong>Hippocampal Sharp-wave Ripples Linked to Visual Episodic Recollection in Humans</strong>". [DOI: 10.1126/science.aax1030]</p> <p>Data files (.mat) and associated scripts (.m) are divided into folders according to the subject of the analysis (e.g. ripple detection, ripple-triggered averages, multivariate pattern analysis etc.) and are all contained in the .zip file: “Norman_et_al_2019_data_and_code_zenodo.zip".</p> <p>The code is written in Matlab R2018b and run on a desktop computer with a 3.4Ghz Intel Core i7-6700 CPU with 64GB RAM.</p> <p>Matlab's Signal Processing Toolbox is required.</p> <p><strong>General notes:</strong></p> <p>1) The data does not contain identifying details about the patients, nor voice recordings.</p> <p>2) Before running the analyses, make sure you set the correct paths in the "startup_script.m" located in the main folder where the zip file was extracted.</p> <p>3) To run the code, the following open-source toolboxes are required:</p> <ul> <li><strong>EEGLAB</strong> (<a href="https://sccn.ucsd.edu/eeglab/download.php">https://sccn.ucsd.edu/eeglab/download.php</a>), version: "eeglab14_1_2b". <ul> <li>A. Delorme, S. Makeig, EEGLAB: An open source toolbox for analysis of single-trial EEG dynamics including independent component analysis. <em>J. Neurosci. Methods</em>. <strong>134</strong>, 9–21 (2004).</li> </ul> </li> <li><strong>Mass Univariate ERP Toolbox</strong> (<a href="https://openwetware.org/wiki/Mass_Univariate_ERP_Toolbox">https://openwetware.org/wiki/Mass_Univariate_ERP_Toolbox</a>), version: "dmgroppe-Mass_Univariate_ERP_Toolbox-d1e60d4". <ul> <li>D. M. Groppe, T. P. Urbach, M. Kutas, Mass univariate analysis of event-related brain potentials/fields I: A critical tutorial review. <em>Psychophysiology</em>. <strong>48</strong>, 1711–1725 (2011).</li> </ul> </li> </ul> <p>*** Make sure you download the relevant toolboxes and save them in the "path_to_toolboxes" before running the analysis scripts (see "startup_script.m")</p> <p>4) Code developed by other authors (redistributed here as part of the analysis code):</p> <ul> <li>DRtoolbox (https://lvdmaaten.github.io/drtoolbox/), version: 0.8.1b. <ul> <li>L.J.P. van der Maaten, E.O. Postma, and H.J. van den Herik. <strong>Dimensionality Reduction: A Comparative Review</strong>. Tilburg University Technical Report, TiCC-TR 2009-005, 2009.</li> </ul> </li> <li>Scott Lowe / superbar (<a href="https://github.com/scottclowe/superbar">https://github.com/scottclowe/superbar</a>), version: 1.5.0.</li> <li>Oliver J. Woodford, Yair M. Altman / export_fig (<a href="https://github.com/altmany/export_fig">https://github.com/altmany/export_fig</a>).</li> </ul>
Dataset: Relation of pest insect-killing and soilborne pathogen-inhibition abilities to species diversification in environmental Pseudomonas protegens
<p>This dataset is related to "<em>Relation of pest insect-killing and soilborne pathogen-inhibition abilities to species diversification in environmental Pseudomonas protegens</em>" and contains all the data obtained from insect experiments and plant-pathogen inhibition assays, as well as the code used for phylogenetic and Biolog anaylsis. </p>
Dataset related to the publication "Lasing in an Assembled Array of Silver Nanocubes"
<p>This archive contains the raw data used to draw the graphs published in the paper "Lasing in an Assembled Array of Silver Nanocubes". </p>
Gridded fossil CO2 emissions and related O2 combustion consistent with national inventories
<p><strong>Data Access Notice</strong></p> <p>Please note that, at present, the data for a sample of years are provided in this data record due to Zenodo's 50GB data limit. Data for all years 1959-2023 can be accessed via the following link:</p> <p><a href="http://opendap.uea.ac.uk/opendap/hyrax/greenocean/GridFED/GridFEDv2024.0/contents.html">http://opendap.uea.ac.uk/opendap/hyrax/greenocean/GridFED/GridFEDv2024.0/contents.html</a></p> <p><strong>Product Description</strong></p> <p>See Jones et al. (2021) for a detailed description of this dataset and the core methods used to produce it. Key details are provided below.</p> <p>GCP-GridFED (version 2024.0) is a gridded fossil emissions dataset that is consistent with the national CO<sub>2</sub> emissions reported by the Global Carbon Project (GCP; <a href="https://www.globalcarbonproject.org/">https://www.globalcarbonproject.org/</a>) in the annual editions of its Global Carbon Budget (Friedlingstein et al., 2023).</p> <p>GCP-GridFEDv2024.0 provides monthly fossil CO<sub>2 </sub>emissions for the period 1959-2023 at a spatial resolution of 0.1° × 0.1°. The gridded emissions estimates are provided separately for fossil CO<sub>2</sub> emitted by the oxidation of oil, coal and natural gas, international bunkers, and the calcination of limestone during cement production. The dataset also includes the cement carbonation sink of CO<sub>2</sub>. Note that positive values in GridFED signify a surface-to-atmosphere CO<sub>2 </sub>flux (emissions). Negative values signify an atmosphere-to-surface flux and apply only to the cement carbonation sink.</p> <p>GCP-GridFED also includes gridded uncertainties in CO<sub>2 </sub>emission, incorporating differences in uncertainty across emissions sectors and countries, and gridded estimates of corresponding O<sub>2</sub> uptake based on oxidative ratios for oil, coal and natural gas (see Jones et al., 2021).</p> <p><strong>Core Methodology in Brief</strong></p> <p>GCP-GridFEDv2024.0 was produced by scaling monthly gridded emissions for the year 2010, from the Emissions Database for Global Atmospheric Research (EDGAR v4.3.2; Janssens-Maenhout et al., 2019), to the national annual emissions estimates compiled as part of the 2024 global carbon budget (GCP-NAE) for the years 1959-2023 (Friedlingstein et al., 2024). </p> <p>GCP-GridFEDv2024.0 uses a preliminary release of GCP-NAE covering the years 1959-2023 (timestamp 1st August 2024; an update from Andrew and Peters [2023]). The GCP-NAE estimates for year 2023 are based on data available at the timestamp and the estimates are thus expected to differ somewhat from those that will be presented by Friedlingstein et al. (2024), which will adopt updates to GCP-NAE since the timestamp.</p> <p>For full details of the core methodology, see Jones et al. (2021).</p> <p><strong>Changes to the Seasonality of Emissions in GCP-GridFEDv2022.2 onwards</strong></p> <p>The seasonality of emissions (monthly distribution of annual emissions) for the following countries/sources is now based on the seasonality observed in the Carbon Monitor dataset (Liu et al., 2020; Dou et al., 2022): </p> <ul> <li>Austria, Belgium, Brazil, Bulgaria, China, Croatia, Cyprus, Czech Republic, Denmark, Estonia, Finland, France, Germany, Greece, Hungary, India, Ireland, Italy, Japan, Latvia, Lithuania, Luxembourg, Malta, Netherlands, Poland, Portugal, Romania, Russia, Slovakia, Slovenia, Spain, Sweden, United Kingdom, United States.</li> <li>State or province-level data is used for Brazil, China, Russia, and the United States.</li> <li>This also applies for the Bunker Aviation and Bunker Shipping sectors.</li> </ul> <p>Seasonality is determined in the following ways for those countries/sources:</p> <ul> <li>The seasonality of emissions in 2019-2023 is taken from Carbon Monitor.</li> <li>The seasonality of emissions in all years prior to 2019 is assigned as the average of the seasonality from Carbon Monitor in all years excluding 2020 (due to the impact of COVID-19 on the seasonality of emissions in 2020).</li> </ul> <p>For all countries not listed above and all years 1959-2023, GCP-GridFED adopts the seasonality from EDGAR v4.3.2 (year 2010; Janssens-Maenhout et al., 2019) and applies a small correction based on heating/cooling degree days to account for inter-annual climate variability which effects emissions in some sectors (see Jones et al., 2021).</p> <p><strong>Other New Features of GCP-GridFEDv2024.0</strong></p> <ul> <li>There have been no changes to the functionality of the GridFED code in this update versus the previous update (v2023.1).</li> </ul> <p> </p>
Projection of temperature-related mortality in 854 European cities under climate change and adaptation scenarios
<p>This repository contains the data and results from the paper <strong>Estimating future heat-related and cold-related mortality under climate change, demographic and adaptation scenarios in 854 European cities</strong> published in <em>Nature Medicine</em> (<a href="https://doi.org/10.1038/s41591-024-03452-2">https://doi.org/10.1038/s41591-024-03452-2</a>).</p> <p>It provides projections of excess death rates and burden for the period 2015-2099 for five age groups in 854 cities across 30 countries, under three Shared Socioeconomic Pathway (SSP) scenarios, and four adaptation scenarios. The results include point estimates for five-year periods and four global warming levels, along with 95% empirical confidence intervals. </p> <p>The fully reproducible analysis code using the data and producing the results included in this repository is provided in <a href="https://github.com/PierreMasselot/EUcityProj" target="_blank" rel="noopener">GitHub</a>. The results can be visualised and explored in a dedicated <a href="https://ehm-lab.shinyapps.io/vistemphip/">Shiny app</a>.</p> <h3>Content</h3> <p>This repository contains three zip files, each with an internal codebook:</p> <ul> <li><em>data.zip</em>: contains the input data necessary to run the analysis. It includes historical and projected daily temperature at the city level, age-group specific projections of population and survival rates at the country level, and exposure-response functions extracted from another Zenodo repository (<a href="https://doi.org/10.5281/zenodo.10288665" target="_blank" rel="noopener">https://doi.org/10.5281/zenodo.10288665</a>). This file also include a script showing how each dataset was extracted for the purpose of this projection study.</li> <li><em>results_csv.zip</em>: contains the full results from the health impact projections. It includes one file for each combination of geographical level (city, country, region or European wide) and scale of reporting (five year periods or global warming levels). </li> <li><em>results_parquet.zip</em>: contains the same information as the <em>results_csv.zip</em> but in a parquet format. This allows for more efficient storage and data reading.</li> </ul> <p>It is recommended to only download <em>results_csv.zip</em> for a quick exploration of the results, or only <em>results_parquet.zip</em> when the results are to be loaded into a software for deeper analysis.</p> <p> </p>
Topography drives microgeographic adaptations of closely-related species in two tropical tree species complexes
<p>Combining LiDAR-derived topography, tree inventories, and single nucleotide polymorphisms (SNPs) from gene capture experiments, we explored genome-wide population genetic structure, covariation of environmental variables, and genotype-environment association to assess microgeographic adaptations to topography within the species complexes <em>Symphonia</em> (Clusiaceae), and <em>Eschweilera</em> (Lecythidaceae) with three species per complex and 385 and 257 individuals genotyped, respectively.</p>
Universal relation for supernova gravitational waves
<p><span> </span>The data of the gravitational wavefroms of core-collapse supernovae, which are used in Sotani, Takiwaki and Togashi (2021), Physical Review D, Volume 104, Issue 12, article id.123009</p> <p>Data Format:</p> <p>The data are in ASCII format and the two columns are1:time time since bounce in sec</p> <p>2:hplus plus polarization of the GW amplitude. We assume the source distance of 10 kpc.</p> <p>The data are sampled at ~10 kHz, but, the sampling is not uniform in time. Therefore resampling might be necessary.</p>
ValRun: GMP-grade Manufacturing and Quality Control of a Non-Virally engineered Advanced Therapy Medicinal Product for Personalized Treatment of Age-Related Macular Degeneration
<p><strong>VaLRun: </strong></p> <p><strong>Raw data of "GMP-grade Manufacturing and Quality Control of a Non-Virally engineered Advanced Therapy Medicinal Product for Personalized Treatment of Age-Related Macular Degeneration"</strong></p> <p>(Excel-, pdf-, GraphPad-files, mp4 videos and a READ-ME text file)</p> <p>The introduction of new therapeutics requires validation of Good Manufacturing Practice (GMP)-grade manufacturing including suitable quality controls. This is challenging for Advanced Therapy Medicinal Products (ATMP) with personalized batches. We have developed a person-alized, cell-based gene therapy to treat age-related macular degeneration and established a vali-dation strategy of the GMP-grade manufacture for the ATMP; manufacturing and quality control were challenging due to a low cell number, batch-to-batch variability and short production duration. Instead of patient iris pigment epithelial cells, human donor tissue was used to produce the transfected cell product (“tIPE”). We implemented an extended validation of 104 tIPE productions. Procedure, operators and devices have been validated and qualified by determining cell number, viability, extracellular DNA, sterility, duration, temperature and volume. Transfected autologous cells were transplanted to rabbits verifying feasibility of the treatment. A container has been engineered to insure a safe transport from the production to the surgery site. Criteria for successful validation and qualification were based on tIPE’s Critical Quality Attributes and Process Parameters, its manufacture and release criteria. The validated process and qualified operators are essential to bring the ATMP into clinic and offer a general strategy for the transfer to other manufacture centers and personalized ATMPs.</p>
The Data Related to Interfacial Shift Keying Allows a High Information Rate in Molecular Communication
<p>This dataset is related to a method for molecular communication in fluids described on "Fluorescent nanoparticles for reliable communication among implantable medical devices," Carbon, vol. 190, pp. 262-275, Apr. 2022, by Federico Calì, Luca Fichera, Giuseppe Trusso Sfrazzetto, Giuseppe Nicotra, Gianfranco Sfuncia, Elena Bruno, Luca Lanzanò, Ignazio Barbagallo, Giovanni Li-Destri, Nunzio Tuccitto; doi: 10.1016/J.CARBON.2022.01.016. <br> The dataset is linked to the manuscript entitled "Interfacial Shift Keying Allows a High Information Rate in Molecular Communication: Methods and Data" by F. Calì, G. Li-Destri, and N. Tuccitto submitted to IEEE Transactions on Molecular, Biological, and Multi-Scale Communications (T-MBMC).<br> The data, including elapsed time (s), starting from the injection and fluorescence intensity (a.u.), is given in tab-separated values format as .txt files. When present, a column includes the intensity subtracted for the baseline and the subtracted and normalized intensity. In all cases, the baseline was obtained by performing a linear fit between 10 and 110 s and subtracting the line obtained from the entire dataset.<br> </p>
Data from systematic audit for paper: Insights into the quantification and reporting of model-related uncertainty across different disciplines
<p>This upload contains 7 data files (each contains cleaned and compiled data for a given scientific field) and 2 R scripts. These files support the paper: Insights into the quantification and reporting of model-related uncertainty across different disciplines.</p> <p> </p> <p><strong>Description of the data</strong></p> <p>Compiled data files for each field contain all reviewers audit answers for eligible papers. All papers that met exclusion criteria have been removed.</p> <p>Data checks have been performed and formatting errors corrected either in R or manually, following steps detailed in the STAR methods.</p> <p>Column names and description:</p> <ul> <li>Number: number of question from 1 to 9</li> <li>Questions: question text – question to be answered by the reviewer</li> <li>QuestionCode: shortened code for each question</li> <li>Paper: paper code - first author surname/initial and surname and year</li> <li>Initials: initials of reviewer</li> <li>Answer: answer to the question</li> <li>Details: extra details to support the answer</li> <li>Location: where in the text the uncertainty was presented</li> <li>Presentation: how the uncertainty was presented</li> <li>ModelType: type of model (focal model)</li> <li>Comments: any other comments from the reviewer</li> <li>Checks: checks of whether NA or no have been included in correct places e.g. if answers to questions 1:4 are no then question 9 is NA, if question 7 is no then 8 is NA</li> <li>Check 1 = when Answer = No, Location is NA</li> <li>Check 2 = when Answer to Number 1-4, 6 or 8-9 is Yes that Details are not NA</li> <li>Check 3 = when Answer = No, Presentation = NA</li> <li>Check 4 = when Location is not NA, presentation is not NA</li> <li>Check 5 = if the Answer to 5 or 7 is "No" then Answer to 6 and 8 = "NA"</li> <li>Check 6 = if Answer for 1-4 is "No", then Answer for 9 = "NA"</li> </ul> <p><strong>Code description</strong></p> <p>Two scripts are included, the first is theme_script.R, this includes code to set up a ggplot theme for the figures. The second is Figure_code.R, this script contains all code to plot and save the three figures from the paper.</p>
[Dataset] Analysis of ego-networks of two CS-related Twitter accounts
<p><strong>Explanation/Overview:</strong></p> <p>This is the dataset for the analyses and results on Twitter Ego-Networks of two CS-related accounts (<a href="https://twitter.com/EuCitSci">@EuCitSci</a> & <a href="https://twitter.com/SciStarter">@SciStarter</a>). The username have been anonymised.</p> <p><strong>Purpose:</strong></p> <p>The purpose of this dataset is to provide the basis to reproduce the results reported in the associated deliverable. As such, it <strong>does not</strong> represent <strong>raw data</strong>, but rather files that already include certain analysis steps (like calculated degrees or other SNA-related measures), ready for analysis, visualisation and interpretation with R or any other network visualisation software (e.g., Gephi). The edges represent the follow relation and were retrieved using the Twitter API. All usernames except those of the two ego-accounts were anonymised by assigning a random number to each node. Due to the size of the network, we do not include any <code>.gexf </code>or <code>.gml </code>files in this upload, but rather resort to node and edge lists in the <code>.json</code> format</p> <p><strong>Relatedness:</strong></p> <p>The networks are the ego-networks for two related public accounts that are associated with citizen science (<a href="https://twitter.com/EuCitSci">@EuCitSci</a> & <a href="https://twitter.com/SciStarter">@SciStarter</a>).</p> <p><strong>Content:</strong></p> <p>In this Zenodo entry, two files can be found.</p> <ul> <li><code>edges.json</code></li> </ul> <p>Represents the edge list, with the columns:</p> <table> <tbody> <tr> <td><code>source</code></td> <td><code>target</code></td> <td><code>wherefrom</code></td> <td><code>account</code></td> </tr> <tr> <td>EuCitSci</td> <td>23929</td> <td>friendslist</td> <td>EuCitSci</td> </tr> </tbody> </table> <p><code>Source</code> and <code>target</code> are the necessary columns for the network creation and in this example indicate that EuCitSci follows 23929. <code>wherefrom </code>indicates the origin of this relation in the crawling (i.e., whether it was retrieved using the friends or follower list) and <code>account </code>indicates the ego-account it belongs to. Thus, the edges can also be separated using this <code>account </code>attribute as they represent two distinct networks.</p> <ul> <li><code>nodes.json</code></li> </ul> <p>Represents the nodes in the networks. The following data fields are contained:</p> <table> <tbody> <tr> <td><code>username</code></td> <td><code>CS</code></td> <td><code>followers_count</code></td> <td><code>friends_count</code></td> <td>...</td> </tr> <tr> <td>1116</td> <td>CS</td> <td>689</td> <td>514</td> <td>...</td> </tr> </tbody> </table> <table> <tbody> <tr> <td>...</td> <td><code>favourites_count</code></td> <td><code>listed_count</code></td> <td><code>statuses_count</code></td> <td>...</td> </tr> <tr> <td>...</td> <td>2601</td> <td>18</td> <td>2141</td> <td>...</td> </tr> </tbody> </table> <table> <tbody> <tr> <td>...</td> <td><code>degree</code></td> <td><code>in_degree</code></td> <td><code>out_degree</code></td> <td>...</td> </tr> <tr> <td>...</td> <td>21</td> <td>5</td> <td>16</td> <td>...</td> </tr> </tbody> </table> <table> <tbody> <tr> <td>...</td> <td><code>reciprocity</code></td> <td><code>account</code></td> </tr> <tr> <td>...</td> <td>0.48</td> <td>EuCitSci</td> </tr> </tbody> </table> <p> </p> <p><code>Username </code>represents the numerical and anonymised username, <code>CS</code> the community-membership. The different counts (e.g., <code>followers_count</code>) indicate the number of followers the user had at the time of the retrieval by the Twitter API. <code>degree</code> refers to the degree in the network (similarly the <code>in-</code> and <code>out_degree</code>), while <code>reciprocity</code> refers to the number of mutual edges in respect to the total number of edges per node (see <a href="https://networkx.org/documentation/stable/reference/algorithms/generated/networkx.algorithms.reciprocity.reciprocity.html">here</a>). <code>Account</code> is similar as described above.</p> <p> </p> <p><strong>Grouping:</strong></p> <p>The data is grouped according the ego-account it is associated to, as can be read above (i.e., the <code>account</code> attribute).</p>
Data and code related to the paper: "Integrated stretchable pneumatic strain gauges for electronics-free soft robots"
<p>This folder contains the raw data and Matlab scripts to reproduce the plots and supplementary movies for the paper:</p> <p>Anastasia Koivikko, Vilma Lampinen, Mika Pihlajamäki, Kyriacos Yiannacou, Vipul Sharma & Veikko Sariola, "Integrated Stretchable Pneumatic Strain Gauges for Electronics-Free Soft Robots", Communications Engineering, 1, 14 (2022).</p> <p><a href="https://doi.org/10.1038/s44172-022-00015-6">Link to the paper</a>.</p> <p>The scripts were tested on Matlab R2021a on Windows.</p> <p>Generally speaking, there is a folder containing the plotting scripts for each figure. In most cases, the folder contains scripts named <strong>plot<...>.m</strong> that recreate the actual plots. Some folders also have a scripts <strong>analyze<...>.m</strong> to analyze the data; these need to be run before the actual plotting.</p> <p>For more details, please see the paper.</p>
Novel estimates of the leaf relative uptake rate of carbonyl sulfide from optimality theory
<p>Data and Matlab scripts for repeating the analysis presented in the paper. In addition, global monthly climatological LRUs are provided at 0.05° resolution for the period 2001-2010 as nc-files. </p>
Data and code related to the paper: "Programmable Droplet Microfluidics Based on Machine Learning and Acoustic Manipulation"
<p>This archive contains the raw data and Matlab scripts to reproduce the plots and supplementary movies for the paper:</p> <p>Kyriacos Yiannacou, Vipul Sharma and Veikko Sariola, "Programmable Droplet Microfluidics Based on Machine Learning and Acoustic Manipulation", <em>Langmuir</em> 2022, 38, 38, 11557–11564.</p> <p><a href="https://doi.org/10.1021/acs.langmuir.2c01061">Link to the paper</a>.</p> <p>The scripts were tested on Matlab R2021a on Windows.</p> <p>The acoustofluidic controller software is the same as in our previous paper and is archived <a href="https://doi.org/10.5281/zenodo.4593021">here</a>.</p> <p>Generally speaking, there is a folder containing the plotting scripts for each figure(s) and/or movie(s). Within each folder, the raw data files are under the folder `data/`. Once ran, the scripts produce another folder called `output/`, to which they place the created plots and movies. Most folder contain a script name `plot_*.m` that makes the figure(s) and `video_*.m` that generates the video(s). You will need `ffmpeg` installed to convert the serial images into a video.<br> </p>
Dataset: A database of near-field head-related transfer functions based on measurements with a laser spark source
<p>This is a database of near-field head-related transfer functions (HRTFs) of an artificial head, measured at four distances (0.2, 0.3, 0.4 and 0.5 m), with 49 positions recorded at each distance, for a total of 196 measurement points. The HRTFs were recorded using an acoustic pulse created by a laser-induced breakdown of air (LIB), which realizes a close to ideal, massless, monopole sound source. The repository contains the original measurement data (raw_data.zip), the derived HRTFs both with (NF_LIB_HRTF_LFE.sofa) and without (NF_LIB_HRTF_measured.sofa) a low-frequency extension (LFE) applied, as well as the MATLAB code used to process the measurement data and to apply the LFE (LIB_HRTF_DB.zip). The database is made publicly available to support future research into nearby sound localization, and virtual/augmented reality applications.</p> <p>Please see the accompanying paper for further details: Marschall et al. (2023), <a href="https://doi.org/10.1016/j.apacoust.2022.109173">A database of near-field head-related transfer functions based on measurements with a laser spark source</a>, Applied Acoustics. </p>
Relative density variations of common vole population based on index transect, Septfontaines - Le Souillot, France (1990-2000)
<p>Transects were walked from village to village along a transect line. Common vole (<em>Microtus arvalis</em>) activity indices were recorded in every ten pace interval from October 1990 to April 2000. In 2014, the geographical coordinates of each interval has been computed by spatial interpolation based on georeferenced maps. Therefore, users must be aware that individual locations of intervals are unprecise, but not the general bearing of the transect in the landscape and interval succession. See articles published for reference and more details.</p> <p>During the same time span, small mammmals (including common voles) were sampled using live-trapping, see <a href="https://doi.org/10.5281/zenodo.6997316">10.5281/zenodo.6997316</a></p> <p><strong>FILE DESCRIPTION:</strong></p> <p><a href="https://zenodo.org/record/7544358/files/db.txt?download=1">db.txt </a>index transect file</p> <ul> <li>name: transect name</li> <li>date: on eight digits, '19921014' reads 14/10/1992</li> <li>ID: interval ID = number (within a given transect at a given date)</li> <li>Habitat: (indicative) the habitat category crossed. Just mentioned when passing from one category to the other; the following intervals are assumed to belong to this habitat</li> <li>ma1: number of <em>Microtus</em> holes; A, 1-5 holes; B, 6-10 holes; C > 10 holes</li> <li>ma2: answered only if A, B, or C are defined in ma1; NA, not answered (ma1 not defined), 0, zero faeces, 1 some faeces or fresh indices (runways with grass freshly cut, etc.); 2 many faeces in heaps</li> <li>long: longitude (WGS84)</li> <li>lat: latitude (WGS84)</li> </ul> <p><a href="https://zenodo.org/record/7544358/files/StudyAreaBoundingBox.kml?download=1">StudyAreaBoundingBox.kml</a> Bounding box of the study area.</p>
Dataset regarding the « Reasons for concern » about climate change from figures in IPCC and related publications
<p>This data corresponds to the 'burning ember' diagrams from IPCC reports and related publications (IPCC TAR, Smith et al. 2009 for AR4-related embers, AR5 and SR15). It was used to build figure 3 of Zommers et al. 2020 (<em>Burning Embers: Towards more transparent and robust climate change risk assessments</em>. Accepted for publication in Nature Reviews Earth & Environment). The data provided here is the result of extraction of information from the original figures, as presented in the related technical document <a href="https://doi.org/10.5281/zenodo.3992856">10.5281/zenodo.3992856</a>. As explained in the Supplementary Information of Zommers et al. 2020 and the technical document, this is not data from the IPCC. The provided values are approximations of the global mean temperature increase corresponding to each change in risk in the original diagrams. The rigour of the preparation process and the limitations of the dataset are explained in the technical document.</p>
Research data related to switchable contact model (SCM) development
<p>Research data of the linked journal article, is composed of input and output files of the LIGGGHTS simulations (Project folders) and an Excel data sheet (Results_Excel) which includes calculated data.</p> <p>The contents are the simulation data and results of cake formation in centrifugal filtration using conventional (mesh) method and novel Switchable contact model (SCM, primitive) method. (For more information see the linked article and the source code of SCM: <a href="https://github.com/DamlaSerper/SCM">https://github.com/DamlaSerper/SCM</a>)</p>
Data for removal kinetics and breakthrough curves of stormwater vehicle-related mobile organic contaminants in geomedia-amended sand columns [Dataset]
<p>This dataset describes the transport and removal of stormwater vehicle-related mobile organic contaminants in geomedia-amended sand columns. The experiments aimed at providing sustainable treatment options for relevant persistent, mobile and toxic (i.e., PMT substances) linked to vehicular traffic pollution. We assessed removal for 1H-benzotriazole, N'N-diphenylguanidine, and hexamethoxymethyl-melamine (PMT precursor) in batch and column experiments using pyrogenic carbonaceous adsorbents (e.g., GAC and biochar). Data contain kinetics batch experiments and breakthrough curves for the target contaminants.</p>
A Curated Gene and Biological System Annotation of Adverse Outcome Pathways Related to Human Health
<p>Adverse Outcome Pathways (AOPs) are multi-scale models of biological mechanisms connecting molecular initiating events to adverse outcomes through measurable key events. AOPs can guide the use and development of new approach methodologies (NAMs) aimed at reducing animal experimentation in chemical safety assessment. Here, we present a comprehensive molecular annotation of AOPs relevant to human health to embed the AOP framework into molecular data interpretation, which supports the development and application of novel AOP-based approaches in biomedical research.</p> <p>Please cite the following publication alongside this Zenodo entry when using the data:</p> <p>Saarimäki, L.A., Fratello, M., Pavel, A. <em>et al.</em> A curated gene and biological system annotation of adverse outcome pathways related to human health. <em>Sci Data</em> <strong>10</strong>, 409 (2023). https://doi.org/10.1038/s41597-023-02321-w</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.