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Dataset results
79 results for “ribosomal DNA”
HDACs act on ribosomal DNA to control the yeast replication program and the competition between origins for limiting initiation factors
GEO Series GSE57619. Saccharomyces cerevisiae W303; Saccharomyces cerevisiae. 52 samples. Type: Genome binding/occupancy profiling by genome tiling array; Genome binding/occupancy profiling by high throughput sequencing.
Zonation of ribosomal DNA transcription defines a stem cell hierarchy in colorectal cancer
GEO Series GSE148345. Homo sapiens. 1441 samples. Type: Expression profiling by high throughput sequencing.
HDACs act on ribosomal DNA to control the yeast replication program and the competition between origins for limiting initiation factors [Mnase-seq]
GEO Series GSE57618. Saccharomyces cerevisiae. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
BisPCRSeq analysis of ribosomal DNA in mouse sperm exposed to protein restriction during different critical time windows
GEO Series GSE107540. Mus musculus. 64 samples. Type: Methylation profiling by high throughput sequencing.
DNA interactions with the ribosomal enhancer
GEO Series GSE11340. Saccharomyces cerevisiae. 2 samples. Type: Genome binding/occupancy profiling by genome tiling array.
Double Stranded DNA Breaks and Genome Editing Trigger Ribosome Remodeling and Translational Shutdown
GEO Series GSE122615. Homo sapiens. 17 samples. Type: Expression profiling by high throughput sequencing; Other.
Ribosomal DNA replication time coordinates completion of genome replication and anaphase in yeast
GEO Series GSE205068. Saccharomyces cerevisiae. 11 samples. Type: Genome variation profiling by genome tiling array.
HDACs act on ribosomal DNA to control the yeast replication program and the competition between origins for limiting initiation factors [ChIP-seq]
GEO Series GSE57617. Saccharomyces cerevisiae. 10 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Serial Analysis of Ribosomal DNA and the Unexpected Dominance of Rare Members of Microbial Communities
GEO Series GSE8119. uncultured bacterium. 4 samples. Type: Other.
Ribosomal DNA Accessibility in Hematopoiesis
GEO Series GSE307498. Mus musculus; Homo sapiens. 0 samples. Type: Third-party reanalysis; Genome binding/occupancy profiling by high throughput sequencing.
Single Nucleotide Resolution Analysis of Nucleotide Excision Repair of Ribosomal DNA in Humans and Mice
GEO Series GSE121042. Homo sapiens; Mus musculus. 10 samples. Type: Other.
HDACs act on ribosomal DNA to control the yeast replication program and the competition between origins for limiting initiation factors [BrdU-IP-chip]
GEO Series GSE56171. Saccharomyces cerevisiae; Saccharomyces cerevisiae W303. 38 samples. Type: Genome binding/occupancy profiling by genome tiling array.
Sir2 and Fun30 regulate ribosomal DNA replication timing via MCM helicase positioning and nucleosome occupancy
GEO Series GSE285768. Saccharomyces cerevisiae. 168 samples. Type: Other.
Isw2 and Ino80 chromatin remodeling factors regulate chromatin, replication, and copy number at the yeast ribosomal DNA locus
GEO Series GSE112465. Saccharomyces cerevisiae. 63 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Figure 6 in A revised taxonomy and phylogeny of opalinids (Stramenopiles: Opalinata) inferred from the analysis of complete nuclear ribosomal DNA genes
Figure 6. Cladogram showing the evolution of Opalinata* based on the proposed evolution of morphological traits (white circles; Delvinquier and Patterson 1993) and the characteristics of the rRNA genes (green circles). The relationships within Proteromonadida are not clear and are represented as a polytomy. Evolutionary steps are as follows. (1) Uninucleated cells develop cytoplasmic membranes with ridges or folds supported by a cortical cytoskeleton; few flagella* with a transitional helix in its structure; rRNA with secondary structure and GC content similar to that of outgroup taxons (i.e. Blastocystis). (2) Multiple flagella covering the cell surface; marginal falx. (3) Insertions made of short tandem repeats (STRs) in the expansion regions of rRNA; low GC in rRNA insertions and ITS1–ITS2 regions. (4) Binucleated (occasionally four-nucleated) cells. (5) Increase in number and length of rRNA insertions; very low GC content in rRNA insertions and ITS1–ITS2 regions. (6) Axial falx. (7) Multinucleate cells. (8) Partial loss of kineties. The position of Hegneriella* if valid* cannot be determined with available data.
FIGURE 4 in Identification and molecular phylogeny of agriculturally important spider mites (Acari: Tetranychidae) based on mitochondrial and nuclear ribosomal DNA sequences, with an emphasis on Tetranychus
FIGURE 4. ML tree based on ITS1 sequences. Sequence data for the ITS1 was aligned from a total of 23 individuals from nine species. The outgroups Neoseiulus swirskii and Typhlodromus pyri (GenBank nos. EU310505 and FM179376, respectively) were used to root the ITS1 tree. Numbers on the branches indicate the percentage bootstrap values (>50) based on NJ bootstrapping with ML settings (1,000 replicates).
FIGURE 3 in Identification and molecular phylogeny of agriculturally important spider mites (Acari: Tetranychidae) based on mitochondrial and nuclear ribosomal DNA sequences, with an emphasis on Tetranychus
FIGURE 3. Neighbor-joining (NJ) tree (a) and maximum likelihood (ML) tree (b) based on COI sequences. Twentythree of the COI sequences were obtained from the nine Chinese tetranychid species analyzed in this study. In addition, thirteen acarine COI sequences were obtained from the GenBank: the COI sequence (GenBank nos. DQ789590 and AY320029) from Brevipalpus obovatus and Cenopalpus pulcher were used as outgroups; the other COI sequences Tetranychus truncatus, T. turkestani, T. piercei, T. neocaledonicus, Panonychus citri, Pa. ulmi, Pa. mori, Amphitetranychus viennensis, A. quercivorus, Petrobia harti and P. tunisiae (GenBank nos. AB257317, AJ316604, AB257314, X80859, AB041252, AB041253, AB041256, X99875, X99873, EU487121 and EU487119 respectively) from GenBank also included into our phylogenetic analysis. Numbers adjacent to branches show the bootstrap values (> 50%) of 1000 replicates.
Protein UFMylation regulates ribosomal DNA double-stranded break repair
GEO Series GSE253809. Homo sapiens. 10 samples. Type: Other.
Sir2 suppresses transcription-mediated displacement of Mcm2-7 replicative helicases at the ribosomal DNA repeats
GEO Series GSE130273. Saccharomyces cerevisiae. 28 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
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OpenNeuro
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