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162
datasets available to search
ShareScore release 0.9.0
Dataset results
162 results for “rna 3d”
An RNA polymerase III tissue and tumor atlas uncovers context-specific activities linked to 3D epigenome regulatory mechanisms
GEO Series GSE306294. Homo sapiens. 24 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
A multiscale 3D chromatin architecture that controls development of the humoral immune system is assembled by IKAROS [RNA-Seq 3]
GEO Series GSE237725. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
Oncogenic Notch promotes long-range regulatory interactions within hyperconnected 3D cliques [HCC1599_RNA-seq]
GEO Series GSE116870. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Reprogramming of 3D genome structure underlying HSPC development in zebrafish [RNA-seq]
GEO Series GSE262188. Danio rerio. 3 samples. Type: Expression profiling by high throughput sequencing.
GRHL and PGR control WNT4 expression in the mammary gland via 3D 2 looping of conserved and species-specific enhancers [T47DS RNA-seq]
GEO Series GSE291778. Homo sapiens. 15 samples. Type: Expression profiling by high throughput sequencing.
Comparative 3D Genome Architecture in Vertebrates (RNA-Seq)
GEO Series GSE167580. Gallus gallus; Sus scrofa; Oryctolagus cuniculus; Mus musculus; Felis catus; Bos taurus; Ovis aries; Rattus norvegicus; Danio rerio; Macaca mulatta; Homo sapiens; Canis lupus familiaris. 29 samples. Type: Expression profiling by high throughput sequencing.
EWS/FLI mediated reprogramming of 3D chromatin promotes an altered transcriptional state in Ewing sarcoma (RNA-Seq)
GEO Series GSE185130. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing; Third-party reanalysis.
3D chromatin-based variant-to-gene maps across 57 human cell types reveal the cellular and genetic architecture of autoimmune disease susceptibility [RNA-seq]
GEO Series GSE271957. Homo sapiens. 41 samples. Type: Expression profiling by high throughput sequencing.
Sex-determining 3D regulatory hubs revealed by genome spatial auto-correlation analysis [RNA-seq]
GEO Series GSE217617. Mus musculus. 26 samples. Type: Expression profiling by high throughput sequencing.
Deciphering Pre-existing and Induced 3D Genome Architecture Changes involved in Constricted Melanoma Migration (RNA-Seq)
GEO Series GSE275395. Homo sapiens. 30 samples. Type: Expression profiling by high throughput sequencing.
Single cell RNA sequencing profiles of human iPSC-derived AT1-like cells in 3D cultures [SPC2B2_LDCI]
GEO Series GSE221343. Homo sapiens. 3 samples. Type: Expression profiling by high throughput sequencing.
Nuclear speckles as a key regulator for the 3D genome organization [RNA-Seq]
GEO Series GSE130805. Mus musculus. 9 samples. Type: Expression profiling by high throughput sequencing.
Investigating the role of telomere length in 3D spatiotemporal gene regulation in cardiomyocytes [RNA-Seq]
GEO Series GSE217701. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
TCF-1 mediates 3D genome reconfiguration during T cell development (RNA-Seq)
GEO Series GSE178347. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
SHARC-seq: High throughput in vivo determination of 3D RNA structures and dynamics
GEO Series GSE167812. Homo sapiens; synthetic construct. 12 samples. Type: Other.
Enhancer plasticity in endometrial tumorigenesis demarcates non-coding driver mutations and 3D genome alterations to stimulate oncogene expression [RNA-seq_ECa_patients]
GEO Series GSE253906. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
HSFA1a controls plant heat stress response through its action on the 3D chromatin reorganization of enhancer-promoter interactions [RNA-seq 2]
GEO Series GSE206363. Solanum lycopersicum. 18 samples. Type: Expression profiling by high throughput sequencing.
CTCF point mutation at R567 disrupts mouse heart development via 3D genome rearrangement and transcription dysregulation [RNA-seq]
GEO Series GSE276744. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
O-GlcNAcylation of CTCF regulates 3D chromatin structure [RNA-seq]
GEO Series GSE255854. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
3D genome landscaping of in vitro totipotent cellular models [RNA-seq]
GEO Series GSE299617. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.