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ShareScore release 0.9.0
Dataset results
69 results for “selfish”
Transposon-encoded nucleases use guide RNAs to selfishly bias their inheritance
GEO Series GSE223127. Escherichia coli BL21(DE3). 18 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Olfactory receptor mRNAs act as selfish non-coding RNAs that enforce transcriptional singularity
GEO Series GSE230380. Mus musculus. 279 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Experimental manipulation of selfish genetic elements links genes to microbial community function
<p>Microbial communities underpin earth’s biological and biogeochemical processes, but their complexity hampers understanding. Here we draw upon predictions from the theory of selfish genetic elements (SGEs), combined with approaches from experimental evolution, comparative metagenomics and biochemistry, and show how naturally occurring SGEs can be used to manipulate genes that underpin community function. Communities comprising hundreds of bacterial genera established from garden compost were propagated with bi-weekly transfer for one year in nitrogen-limited minimal medium with cellulose (paper) as sole carbon source. At each transfer, SGEs from one set of independent communities were collected, pooled and redistributed among this same set of communities (horizontal treatment). A control was included in which SGEs never moved beyond the community in which they were originally present (vertical treatment). SGEs along with genes of ecological relevance were rapidly amplified across horizontal communities and their dynamics tracked. Enrichment of genes implicated in nitrogen metabolism, and particularly ammonification, led to biochemical assays that showed a significant functional difference between communities subject to horizontal versus vertical treatments. This simple experimental strategy offers a powerful new approach for unravelling dynamical processes underpinning microbial community function.</p>
Input and result datasets related to "Mannhardt et al. (2022): Overcoming the energy crisis in Europe: Collaborative and selfish mitigation strategies of the gas shortage" (submitted)
<p>Datasets and raw results for the submitted article:</p> <p>"Overcoming the energy crisis in Europe: Collaborative and selfish mitigation strategies of the gas shortage" </p> <p>by Jacob Mannhardt, Paolo Gabrielli, Giovanni Sansavini (sansavig@ethz.ch)<br> Reliability and Risk Engineering Lab, Institute of Energy and Process Engineering, ETH Zurich</p> <p>All rights lie with the authors. Refer to the README.txt for a description of the datasets and their usage in the article.</p>
Olfactory receptor mRNAs act as selfish non-coding RNAs that enforce transcriptional singularity (OR Switching Experiment)
GEO Series GSE240023. Mus musculus. 30 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Olfactory receptor mRNAs act as selfish non-coding RNAs that enforce transcriptional singularity (Non-coding OR Hi-C & RNA-seq)
GEO Series GSE232194. Mus musculus. 41 samples. Type: Expression profiling by high throughput sequencing; Other.
A small RNA mechanism distinct from the RNAi and microRNA pathways silences selfish genetic elements in Drosophila.
GEO Series GSE4932. Drosophila melanogaster. 10 samples. Type: Non-coding RNA profiling by array.
The selfish yeast plasmid exploits a SWI/SNF-type chromatin remodeling complex for hitchhiking on chromosomes and ensuring high-fidelity propagation
GEO Series GSE225582. Saccharomyces cerevisiae. 47 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Datasets related to "Mannhardt et al. (2022): Overcoming the energy crisis in Europe: Collaborative and selfish mitigation strategies of the gas shortage"
<p>Datasets for the submitted article:</p> <p>"Overcoming the energy crisis in Europe: Collaborative and selfish mitigation strategies of the gas shortage" </p> <p>by Jacob Mannhardt, Paolo Gabrielli, Giovanni Sansavini (sansavig@ethz.ch)<br> Reliability and Risk Engineering Lab, Institute of Energy and Process Engineering, ETH Zurich</p> <p>All rights lie with the authors. Refer to the README.txt for a description of the datasets and their usage in the article.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.