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1,401
datasets available to search
ShareScore release 0.9.0
Dataset results
1,401 results for “single-cell Seq”
Healthy woodchuck genome with viral sequences appended used for single-cell RNA-seq analysis
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CrossMP: Enabling Cross-Modality Translation between Single-Cell RNA-Seq and Single-Cell ATAC-Seq through Web-Based Portal - Appendix
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scCDC: a computational method for gene-specific contamination detection and correction in single-cell and single-nucleus RNA-seq data
<p><span>In droplet-based single-cell and single-nucleus RNA-seq assays, systematic contamination of ambient RNA molecules biases the quantification of gene expression levels. Existing methods correct the contamination for all genes globally. However, specific evaluation for different contamination levels is lacking. Here, we show that DecontX and CellBender under-correct highly-contaminating genes, while SoupX and scAR over-correct lowly-/non-contaminating genes. Here, we develop scCDC as the first method to detect the contamination-causing genes and only correct expression levels of these genes, some of which are cell-type markers. Compared with existing decontamination methods, scCDC excels in decontaminating highly-contaminating genes while avoiding over-correction of other genes.</span></p>
A Pan-Cancer Single-Cell RNA-seq Atlas of Intratumoral B Cells
<p>Seurat object associated with publication 'A Pan-Cancer Single-Cell RNA-seq Atlas of Intratumoral B Cells' (Fitzsimons et al. Cancer Cell 2024)</p>
GO Enrichment Analysis on Single-Cell RNA-Seq Data
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Single-cell RNA-seq unveils fibroblast-t cell interplay in muscle-invasive bladder cancer
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Single-cell RNA-seq uncovers unique gene expression profiles in the spleen of hypoxic mice
GEO Series GSE219259. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
Reprogram-Seq: A platform for single-cell combinatorial reprogramming [V]
GEO Series GSE117790. Mus musculus. 1 samples. Type: Expression profiling by high throughput sequencing.
Single-cell RNA-seq investigation of skin and blood T cells from patients with cutaneous T-cell lymphoma
GEO Series GSE224449. Homo sapiens. 1878 samples. Type: Expression profiling by high throughput sequencing.
Systematic comparison of high-throughput single-cell RNA-seq methods for immune cell profiling [ddSEQ]
GEO Series GSE163788. Mus musculus; Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
Drop-seq analysis of bleomycin-treated and control mouse lung single-cell suspensions
GEO Series GSE111664. Mus musculus. 10 samples. Type: Expression profiling by high throughput sequencing.
10X Genomics single-cell RNA-Seq data set of CreER mice
GEO Series GSE162713. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
single-cell RNA-seq profile of microglia under acute Csf1r inhibition and early repopulation in adult brain
GEO Series GSE150169. Mus musculus. 9 samples. Type: Expression profiling by high throughput sequencing.
Robust single-cell discovery of RNA targets of RNA binding proteins and ribosomes [RNA-seq]
GEO Series GSE155649. Homo sapiens. 77 samples. Type: Other.
Analysis of single-cell RNA-seq data from human PBMCs and from in vitro cultures of human cord blood CD34+ progenitors encompassing different DC types
GEO Series GSE115405. Homo sapiens. 3 samples. Type: Expression profiling by high throughput sequencing.
Single-cell analysis of mouse plasmacytoid dendritic cells (pDCs) unravels their activation trajectory and their molecular regulation in vivo during a viral infection [FB5P-seq_kinetic]
GEO Series GSE151245. Mus musculus. 15 samples. Type: Expression profiling by high throughput sequencing.
Comparative analysis between single-cell RNA-seq and single-molecule RNA FISH indicates that the pyrimidine nucleobase idoxuridine (IdU) globally amplifies transcriptional noise
GEO Series GSE263194. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
Single-Cell Epigenomics Uncovers Heterochromatin Instability and Transcription Factor Dysfunction during Mouse Brain Aging [snATAC-Seq] [10X Multiome]
GEO Series GSE294772. Mus musculus. 142 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Third-party reanalysis.
Single-cell RNA-seq in a comparative primate skeletal cell culture model [2]
GEO Series GSE181743. Pan troglodytes; Homo sapiens. 18 samples. Type: Expression profiling by high throughput sequencing.
Single-cell ATAC-seq analysis of human plasma cell differentiation
GEO Series GSE242324. Homo sapiens. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.