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117
datasets available to search
ShareScore release 0.9.0
Dataset results
117 results for “spatial niche”
Spatiotemporal dynamics of the cardioimmune niche during lesion repair [spatial]
GEO Series GSE280376. Mus musculus. 8 samples. Type: Other.
Distinct cellular and spatial niches within the inflamed synovium of childhood arthritis [scRNA-Seq]
GEO Series GSE278962. Homo sapiens. 46 samples. Type: Expression profiling by high throughput sequencing; Other.
Skin basal cell carcinomas assemble a pro-tumorigenic spatially organized and self-propagating Trem2+ myeloid niche
GEO Series GSE204952. Mus musculus. 11 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Peripheral glia constitute a pro-reparative niche triggering skin wound healing [Spatial Transcriptomics]
GEO Series GSE308952. Mus musculus. 1 samples. Type: Other.
Microglia - astrocyte cross-talk in the amyloid plaque niche of an Alzheimer’s disease mouse model as revealed by spatial transcriptomics (CosMx)
GEO Series GSE263791. Mus musculus. 2 samples. Type: Other.
Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches (spatial)
GEO Series GSE192741. Homo sapiens; Mus musculus. 15 samples. Type: Expression profiling by high throughput sequencing.
Integrative Spatial Multi-Omics Reveal Niche-Specific Inflammatory Signaling and Differentiation Hierarchies in Acute Myeloid Leukemia
GEO Series GSE279576. Homo sapiens. 6 samples. Type: Other.
SARS-CoV-2 Niches in Human Placenta Revealed by Spatial Transcriptomics
GEO Series GSE222987. Homo sapiens; Severe acute respiratory syndrome coronavirus 2. 16 samples. Type: Expression profiling by high throughput sequencing; Other.
The spatial transcriptomic atlas of human limbus and vital niche microenvironment regulating the fate of limbal epithelial stem cells
GEO Series GSE262250. Homo sapiens. 2 samples. Type: Other.
Distinct cellular and spatial niches within the inflamed synovium of childhood arthritis [xenium]
GEO Series GSE278969. Homo sapiens. 8 samples. Type: Other.
Single-cell and in situ spatial analyses reveal the diversity of newly born hematopoietic stem cells and of their niches
GEO Series GSE299770. Danio rerio. 4 samples. Type: Expression profiling by high throughput sequencing.
Cell type mapping reveals tissue niches and interactions in subcortical multiple sclerosis lesions [spatial transcriptomics]
GEO Series GSE279181. Homo sapiens. 18 samples. Type: Other.
Temporal-spatial Establishment of Initial Niche for the Primary Spermatogonial Stem Cell formation is Determined by an ARID4B Regulatory Network
GEO Series GSE84808. Mus musculus. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches (single cells)
GEO Series GSE192740. Danio rerio; Gallus gallus; Macaca mulatta; Homo sapiens; Mesocricetus auratus; Sus scrofa; Mus musculus. 132 samples. Type: Expression profiling by high throughput sequencing.
Temporal-spatial Establishment of Initial Niche for the Primary Spermatogonial Stem Cell formation is Determined by an ARID4B Regulatory Network (ChIP-Seq)
GEO Series GSE84802. Mus musculus. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Spatial reconstruction of immune niches by combining photoactivatable reporter and single-cell RNA-seq
GEO Series GSE104054. Mus musculus. 149 samples. Type: Expression profiling by high throughput sequencing.
Spatial transcriptome profiling by MERFISH reveals fetal liver hematopoietic stem cell niche architecture [scRNA-seq]
GEO Series GSE172127. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
Spatial transcriptional features of MYCN niche in liver tumorigenesis.
GEO Series GSE302815. Mus musculus. 4 samples. Type: Other.
Spatially discrete signalling niches regulate fibroblast heterogeneity in human lung cancer [single-cell RNA-seq]
GEO Series GSE153935. Homo sapiens. 18 samples. Type: Expression profiling by high throughput sequencing; Third-party reanalysis.
Distinct cellular and spatial niches within the inflamed synovium of childhood arthritis [bulk RNA-Seq]
GEO Series GSE278968. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.