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1,076 results for “Metabarcoding”
Supplementary material 12 from: Vamos E, Elbrecht V, Leese F (2017) Short COI markers for freshwater macroinvertebrate metabarcoding. Metabarcoding and Metagenomics 1: e14625. https://doi.org/10.3897/mbmg.1.14625
Sample composition of Romanian macroinvertebrate samples.
Supplementary material 2 from: Lefort M, Wratten S, Cusumano A, Varennes Y, Boyer S (2017) Disentangling higher trophic level interactions in the cabbage aphid food web using high-throughput DNA sequencing. Metabarcoding and Metagenomics 1: e13709. https://doi.org/10.3897/mbmg.1.13709
Supporting Information 2
Supplementary material 9 from: Vamos E, Elbrecht V, Leese F (2017) Short COI markers for freshwater macroinvertebrate metabarcoding. Metabarcoding and Metagenomics 1: e14625. https://doi.org/10.3897/mbmg.1.14625
Number of raw sequences obtained for each sample after demultiplexing.
Supplementary material 7 from: Vamos E, Elbrecht V, Leese F (2017) Short COI markers for freshwater macroinvertebrate metabarcoding. Metabarcoding and Metagenomics 1: e14625. https://doi.org/10.3897/mbmg.1.14625
Gradient PCR optimisation for the fwh primer sets.
Supplementary material 6 from: Vamos E, Elbrecht V, Leese F (2017) Short COI markers for freshwater macroinvertebrate metabarcoding. Metabarcoding and Metagenomics 1: e14625. https://doi.org/10.3897/mbmg.1.14625
Overview of used tagging combinations for sample multiplexing for sequencing.
Supplementary material 4 from: Vamos E, Elbrecht V, Leese F (2017) Short COI markers for freshwater macroinvertebrate metabarcoding. Metabarcoding and Metagenomics 1: e14625. https://doi.org/10.3897/mbmg.1.14625
Overview of the three Romanian macrozoobenthos sampling sites (Z2, L2, R2).
Supplementary material 2 from: Boenigk J, Wodniok S, Bock C, Beisser D, Hempel C, Grossmann L, Lange A, Jensen M (2018) Geographic distance and mountain ranges structure freshwater protist communities on a European scalе. Metabarcoding and Metagenomics 2: e21519. https://doi.org/10.3897/mbmg.2.21519
Lake characteristics and diversity indices
Supplementary material 3 from: Boenigk J, Wodniok S, Bock C, Beisser D, Hempel C, Grossmann L, Lange A, Jensen M (2018) Geographic distance and mountain ranges structure freshwater protist communities on a European scalе. Metabarcoding and Metagenomics 2: e21519. https://doi.org/10.3897/mbmg.2.21519
Bray distance matrix
Supplementary material 1 from: Boenigk J, Wodniok S, Bock C, Beisser D, Hempel C, Grossmann L, Lange A, Jensen M (2018) Geographic distance and mountain ranges structure freshwater protist communities on a European scalе. Metabarcoding and Metagenomics 2: e21519. https://doi.org/10.3897/mbmg.2.21519
Sample Identifier for molecular analyses
Supplementary material 1 from: Theissinger K, Kästel A, Elbrecht V, Makkonen J, Michiels S, Schmidt S, Allgeier S, Leese F, Brühl C (2018) Using DNA metabarcoding for assessing chironomid diversity and community change in mosquito controlled temporary wetlands. Metabarcoding and Metagenomics 2: e21060. https://doi.org/10.3897/mbmg.2.21060
We provide all information regarding the library preparation.
Supplementary material 2 from: Theissinger K, Kästel A, Elbrecht V, Makkonen J, Michiels S, Schmidt S, Allgeier S, Leese F, Brühl C (2018) Using DNA metabarcoding for assessing chironomid diversity and community change in mosquito controlled temporary wetlands. Metabarcoding and Metagenomics 2: e21060. https://doi.org/10.3897/mbmg.2.21060
Pipeline used for bioinformatic processing of metabarcoding data in Theissinger et al.
Supplementary material 7 from: Lee T, Alemseged Y, Mitchell A (2018) Dropping Hints: Estimating the diets of livestock in rangelands using DNA metabarcoding of faeces. Metabarcoding and Metagenomics 2: e22467. https://doi.org/10.3897/mbmg.2.22467
Taxon accumulation curves for Dorper specimens.
Supplementary material 10 from: Ushio M, Murakami H, Masuda R, Sado T, Miya M, Sakurai S, Yamanaka H, Minamoto T, Kondoh M (2018) Quantitative monitoring of multispecies fish environmental DNA using high-throughput sequencing. Metabarcoding and Metagenomics 2: e23297. https://doi.org/10.3897/mbmg.2.23297
Abundance of some common fish species obtained by the direct visual census
Supplementary material 14 from: Lee T, Alemseged Y, Mitchell A (2018) Dropping Hints: Estimating the diets of livestock in rangelands using DNA metabarcoding of faeces. Metabarcoding and Metagenomics 2: e22467. https://doi.org/10.3897/mbmg.2.22467
Family level taxa (BOLD Data), at 3 minimum read depth.
Supplementary material 3 from: Lee T, Alemseged Y, Mitchell A (2018) Dropping Hints: Estimating the diets of livestock in rangelands using DNA metabarcoding of faeces. Metabarcoding and Metagenomics 2: e22467. https://doi.org/10.3897/mbmg.2.22467
DNA barcode results (GenBank) for plant reference samples.
Supplementary material 2 from: Ushio M, Murakami H, Masuda R, Sado T, Miya M, Sakurai S, Yamanaka H, Minamoto T, Kondoh M (2018) Quantitative monitoring of multispecies fish environmental DNA using high-throughput sequencing. Metabarcoding and Metagenomics 2: e23297. https://doi.org/10.3897/mbmg.2.23297
Primer, index and probe sequences used in the study
Supplementary material 1 from: Ushio M, Murakami H, Masuda R, Sado T, Miya M, Sakurai S, Yamanaka H, Minamoto T, Kondoh M (2018) Quantitative monitoring of multispecies fish environmental DNA using high-throughput sequencing. Metabarcoding and Metagenomics 2: e23297. https://doi.org/10.3897/mbmg.2.23297
The numbers of sequence reads remaining (filtered) in data processing steps
Supplementary material 7 from: Ushio M, Murakami H, Masuda R, Sado T, Miya M, Sakurai S, Yamanaka H, Minamoto T, Kondoh M (2018) Quantitative monitoring of multispecies fish environmental DNA using high-throughput sequencing. Metabarcoding and Metagenomics 2: e23297. https://doi.org/10.3897/mbmg.2.23297
Results of quantitative PCR for total fish eDNA, Japanese anchovy and Japanese jack mackerel
Supplementary material 12 from: Lee T, Alemseged Y, Mitchell A (2018) Dropping Hints: Estimating the diets of livestock in rangelands using DNA metabarcoding of faeces. Metabarcoding and Metagenomics 2: e22467. https://doi.org/10.3897/mbmg.2.22467
Family level taxa (GenBank data), at 3 minimum read depth.
Supplementary material 5 from: Lee T, Alemseged Y, Mitchell A (2018) Dropping Hints: Estimating the diets of livestock in rangelands using DNA metabarcoding of faeces. Metabarcoding and Metagenomics 2: e22467. https://doi.org/10.3897/mbmg.2.22467
Family level taxa (BOLD Data) ('*' indicates that the column contains no taxa).
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International Brain Laboratory public data
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OpenNeuro
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