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1,582 results for “manuscript”
Complete set of raw and processed datasets, as well as associated Jupyter notebooks for analysis, associated with manuscript entitled: "The MOUSE project: a practical approach for obtaining traceable, wide-range X-ray scattering information"
<p>This dataset is a complete set of raw, processed and analyzed data, complete with Jupiter notebooks, associated with the manuscript mentioned in the title. </p> <p>In the manuscript, we provide a ``systems architecture''-like overview and detailed discussions of the methodological and instrumental components that, together, comprise the "MOUSE" project (<strong>M</strong>ethodology <strong>O</strong>ptimization for <strong>U</strong>ltrafine <strong>S</strong>tructure <strong>E</strong>xploration). Through this project, we aim to provide a comprehensive methodology for obtaining the highest quality X-ray scattering information (at small and wide angles) from measurements on materials science samples. </p>
Output Files from Reactive Transport Models (supplement to Solid Earth Manuscript 'se-2020-99')
<p>This repository includes the output files (in Tecplot format) of the numerical models in the paper entitled "<em><strong>Understanding controls on hydrothermal dolomitisation: insights from 3D Reactive Transport Modelling of geothermal convection</strong></em>".</p> <p>A key to the output data provided here is summarised in Data_Benjakul_et_al_2020.xlsx.</p> <p> </p> <p>We used <strong>TOUGHREACT</strong>, a numerical simulation program developed by the Lawrence Berkeley National Laboratory (LBNL) which is available at: <a href="https://tough.lbl.gov/licensing-download/toughreact-licensing-download/">https://tough.lbl.gov/licensing-download/toughreact-licensing-download/</a> to numerically model the convection of seawater in a single fault within carbonate-hosted system. The parameters used in the numerical models are given in the paper.</p> <p><a href="https://doi.org/10.5194/se-11-2439-2020">https://doi.org/10.5194/se-11-2439-2020</a></p> <p>The output files from TOUGHREACT (in Tecplot format) are visualised using <strong>trexplot</strong>, a python script developed by Hamish Robertson which can be found at: <a href="https://github.com/hammytheham/trexplot">https://github.com/hammytheham/trexplot</a> (last access: 5 December 2020).</p> <p> </p> <p>Please contact me via the following e-mail addresses in case you have any questions: <a href="mailto:rb17526@bristol.ac.uk">rb17526@bristol.ac.uk</a> or <a href="mailto:rbenjaku@gmail.com">rbenjaku@gmail.com</a></p>
Dataset used for the submitted manuscript "The hump-shaped effect of plant functional diversity on the biological control of a multi-species pest community"
<p>Dataset</p>
Data to accompany manuscript: Detection and tracking of cracks based on thermoelastic stress analysis
<p>Thermoelastic stress analysis datasets were collected during tensile loading of hole-in-plate aluminium alloy specimens, at both constant amplitude and frequency conditions, and at variable amplitude and frequency conditions - based on an idealised flight cycle. Data were collected during initiation and propagation of a fatigue crack and monitored using three types of infra-red detector at different price points.</p> <p> </p> <p>--------------------------</p> <p>This dataset accompanies the manuscript:</p> <p>Detection and tracking of cracks based on thermoelastic stress analysis</p> <p>Middleton C. A.1, Weihrauch, M.1, Christian, W. J. R.1, Greene, R. J.2, and Patterson, E. A.1</p> <p>1School of Engineering, University of Liverpool, The Quadrangle, Brownlow Hill, Liverpool, L69 3GH, U.K.<br> 2Strain Solutions Ltd, Dunston Innovation Centre, Dunston Road, Chesterfield, Derbyshire S41 8NG, U.K.</p> <p>Royal Society Open Science, Accepted: 26 November 2020</p> <p> </p> <p> </p>
Mapping Manuscript Migrations Knowledge Graph
<p>The Mapping Manuscript Migrations (MMM) project transformed three separate datasets into a unified knowledge graph. The source databases include</p> <p>- <a href="https://sdbm.library.upenn.edu">Schoenberg Database of Manuscripts</a> from the Schoenberg Institute for Manuscript Studies,<br> - <a href="http://bibale.irht.cnrs.fr">Bibale database</a> from the Institute for Research and History of Texts, and<br> - <a href="https://medieval.bodleian.ox.ac.uk">Medieval Manuscripts in Oxford Libraries</a>.</p> <p>The Knowledge Graph has been created using the <a href="https://github.com/mapping-manuscript-migrations/mmm-data-conversion">MMM data transformation pipeline</a>. This dataset is available on a public SPARQL endpoint (<em>http://ldf.fi/mmm/sparql</em>) and it can be directly deployed onto a SPARQL endpoint using <a href="https://github.com/mapping-manuscript-migrations/mmm-fuseki">this docker recipe</a>.</p> <p>To test and demonstrate its usefulness, the MMM Knowledge Graph is in use in the <a href="https://mappingmanuscriptmigrations.org/">MMM Semantic Portal</a>.</p> <p><strong>Version History</strong></p> <ul> <li>1.0.0, January 2020.</li> <li>1.1.0, February 2020, Updated Bibale and SDBM source datasets, data processing improvements.</li> <li>2.0.0, May 2020, Updated SDBM source dataset, data processing fixes affecting some generated URIs.</li> <li>2.1.0, September 2020, Updated Bibale and SDBM source datasets, minor data processing bug fixes.</li> <li>2.2.0, January 2021, Updated Oxford source dataset, minor data processing improvements.</li> </ul> <p> </p> <p> </p>
Assemblies generated in the manuscript "Time and memory efficient genome assembly with Raven"
<p>This collection contains assemblies generated for the benchmark in the manuscript "Time and memory efficient genome assembly with Raven".</p>
Optical Trapping Data for the manuscript "Myosin with hypertrophic cardiomyopathy mutation R712L has a reduced working stroke which is rescued by omecamtiv mecarbil"
<p>Optical Trapping Data for the manuscript "Myosin with hypertrophic cardiomyopathy mutation R712L has a reduced working stroke which is rescued by omecamtiv mecarbil"</p>
Dataset linked to manuscript entitled "Changes in Arctic Stratification and Mixed Layer Depth Cycle, A Modeling Analysis" by Hordoir et al.
<p>This dataset allows the re-create the fingures showing changes in Arctic stratification and mixed layer depth, as in the manuscript. Additional information can be obtained by email.</p>
Manuscript data for "PASV: Automatic protein partitioning and validation using conserved residues"
<p>Manuscript data for "PASV: Automatic protein partitioning and validation using conserved residues"</p>
Dataset supporting the manuscript dedicated to lignin precursor incorporation analysis, bioorthogonal labeling, parametric and AI based segmentation.
<p>This dataset aims to test the algorithms presented in an article submitted by the authors and untitled:</p> <p><strong>The combination of chemical reporter-, segmentation- and ratiometric-methods enables high-quality mapping of lignification dynamics in plant cell walls</strong></p> <p><strong>Are available:</strong></p> <p>-the algorithm with graphical user interface for imageJ and its installation procedure ("Cell_Wall_Segmentation " and "Tutorial Cell_Wall_Segmentation")</p> <p>-a folder comprising a classifier and a data set compatible with the machine learning part of the algorithm "data and classifier for weka"</p> <p>- representative images adapted for testing “representative images”</p> <p>- the macro corresponding to the parametric segmentation procedure (see imageJ documentation for installation instructions) “parametric_segmentation”</p>
CushingAcromegalyStudy: Dataset for Hochberg et al 2015 PLOS One Manuscript
<p>This dataset contains the raw data and analysis code for the studies described in this manuscript:</p> <p>Hochberg, Q. T. Tran, A. L. Barkan, A. R. Saltiel, W. F. Chandler, D. Bridges, Gene Expression Signature in Adipose Tissue of Acromegaly Patients, PLoS One 10, e0129359 (2015). doi:10.1371/journal.pone.0129359</p>
FIGURE 4. Anastoechus male genitalia. A in New species of Bombylioidea in Mario Bezzi's Unpublished Hungarian Museum Manuscript
FIGURE 4. Anastoechus male genitalia. A, genitalia of Anastoechus spinifacies Bezzi. B, gonostylus of A. spinifacies Bezzi. C, gonostylus of A. miscens (Walker).
FIGURES 29–32 in New species of Bombylioidea in Mario Bezzi's Unpublished Hungarian Museum Manuscript
FIGURES 29–32. Lectotype specimens of species of Bombyliidae referred to in Bezzi's manuscript. 29–30, Litorrhynchus evanescens Bezzi [= Litorhina] (lectotype in MSNM). 29, female habitus. 30, wing. 31–32, Plesiocera biumbonata Bezzi [= Epacmoides] (lectotype in MSNM). 31, male habitus. 32, head.
FIGURE 3 in New species of Bombylioidea in Mario Bezzi's Unpublished Hungarian Museum Manuscript
FIGURE 3. Examples of Bezzi labels. A, samples of Bezzi handwriting from two determination labels. B, labels from Exoprosopa fuscescens. C, labels from Bombylius braunsi [= Australoechus]. D, labels from Bombylius fucatus [= Parisus].
Supplement of manuscript TEJP-2014-0106 ( http://doi.org/10.1080/09670262.2015.1077395 )
<p>This folder contains analysis data from the study published as Article (Manuscript ID TEJP-2014-0106):</p> <p>TITLE: RNA and DNA based assessment of sea ice protist biodiversity of the central Arctic Ocean.</p> <p>AUTHORS: Anique Stecher, Stefan Neuhaus, Benjamin Lange, Stephan Frickenhaus, Bánk Beszteri, Peter Kroth and Klaus Valentin</p> <p>JOURNAL: The European Journal of Phycology MS-ID: TEJP-2014-0106</p> <p> </p> <p>List of Files:</p> <p>Description: Filename</p> <p>-------------------------------------------------------------------------------------------------------------------------</p> <p>QIIME-ZIP archive from the QZIP-pipeline: CompArc_combined_20140218_092318.zip</p> <p>( QZIP-Summary can be found in index.htm )</p> <p>Biome Table from QZIP: Otu_table_CompArc_RNA-DNA-combined_20140218_092318.tab</p> <p>separated Biom tables: TEJP-2014-0106_Alveolata_biom.tab TEJP-2014-0106_Diatoms_biom.tab</p> <p>R-scripts for producing PDFs for Figure 5: Rscript_Alveolates_TEJP-2014-0106.R Rscript_Diatoms_TEJP-2014-0106.R</p> <p>Phyloassigner databases: silva111_alveolata_2504_outgroup_28.padb.zip silva111_diatoms_1390_outgroup_196.padb.zip</p> <p>This README-file: README-TEJP-2014-0106.txt -------------------------------------------------------------------------------------------------------------------------</p> <p>For further information on supplement data and related publications see Bioinformatics Group at AWI: http://www.awi.de/en/go/bioinformatics http://www.awi.de/People/show?sfricken and links therein.</p> <p>Bremerhaven, 10/Dec/2014</p>
Data for manuscript "Automatic detection of orientation entropy within scenes"
<p>Raw Neuropscan .cnt data for 15 participants with conditions and stimulus order described in the logbook for each participant.</p>
Data of 3D MHD Simulation for manuscript "Characteristics of Transpolar Arc Motion and its Corresponding Magnetospheric Dynamic Process"
<p>Data of 3D MHD Simulation for manuscript "Characteristics of Transpolar Arc Motion and its Corresponding Magnetospheric Dynamic Process"</p> <p>There are 6 types of data files:</p> <p>1) -3)MHD simulation results for FAC, plasma density, and temperature, projected at the x = -40RE position, with the viewpoint from the magnetotail towards the earth</p> <p>4) FAC mapping.rar. These data are the parametters in the plane of about Z=0 RE, which were mapped to the 7.2 Re, along the magnetic field lines.</p> <p>5) The simulation results of the model are plotted for FAC on Z=0RE.</p> <p>The results of the above data simulation plot are from 20171115 23:00 UT to 20171116 02:00 UT.</p> <p>6) XXBDd0142.rar, which is full 3D Simulation data at 2017.11.16 01:22 UT;</p> <p>All of these data include the following parameters:</p> <p>time, x, y, z, logrho, Vx, Vy, Vz, Bx, By, Bz, Pr, Jx, Jy, Jz, Edj</p> <p>7) SSUSI data at 2017.11.16.</p> <p> </p>
Dataset for manuscript : "Weak and shallow secondary frictional faults revealed by large earthquakes in Haiti".
<p>This archive file contains datafiles used in "Weak and shallow secondary frictional faults revealed by large earthquakes in Haiti".<br><br>README.txt files describing the datasets are available within the archive.</p>
Data and code for the manuscript "Internal vs Forced Variability Metrics for General Circulation Models Using Information Theory"
<p>Data and code for the manuscript "Internal vs Forced Variability Metrics for General Circulation Models Using Information Theory" published in the Journal of Geophysical Research Oceans. <br>URL of the manuscript: https://agupubs.onlinelibrary.wiley.com/doi/10.1029/2023JC020101<br>DOI of the manuscript: https://doi.org/10.1029/2023JC020101</p>
Dataset associated with manuscript "Magnetosphere-ionosphere coupling via prescribed field-aligned current simulated by the TIEGCM"
<p>The dataset is associated with the manuscript "Magnetosphere-ionosphere coupling via prescribed field-aligned current simulated by the TIEGCM". It is based on simulations using the NCAR Thermosphere-Ionosphere Electrodynamics General Circulation Model (TIEGCM) and comparing the thermosphere-ionosphere response during 28-30 May, 2010 geomagnetic storm due to different realizations of magnetosphere-ionosphere (MI) coupling in the model. Results are presented using for MI coupling the Assimilative Mapping of Ionospheric Electrodynamics (AMIE), the empirical Weimer ion convection, and fitted field-aligned current based on observations from the Active Magnetosphere and Planetary Electrodynamics Response Experiment (AMPERE). The output includes among others high latitude quantities of auroral ionization rates, field-aligned current, electric potential, hemispheric integrated Joule heating, and middle and low-latitude zonal mean neutral wind, density, composition, ionospheric Nmf2, TEC and equatorial vertical drift.</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.