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FIGURE 4 in Phylogeny of the tribe Archipini (Lepidoptera: Tortricidae: Tortricinae) and evolutionary correlates of novel secondary sexual structures
FIGURE 4. Basal Archipini group summary tree of phylogenetic analyses. Clades are numbered in bold to the right of their respective nodes. Numerical values above and below branches are maximum parsimony bootstrap, maximum likelihood bootstrap, and Bayesian posterior probabilities, respectively (COI above, COI+28S rDNA below). "+" = a clade with less than 50% bootstrap support or posterior probability, "0" = a clade is part of a polytomy, and "-" = a clade contradicted by tree topology. Specimen photos are absent when no specimens were available for examination.
FIGURE 5 in Phylogeny of the tribe Archipini (Lepidoptera: Tortricidae: Tortricinae) and evolutionary correlates of novel secondary sexual structures
FIGURE 5. Pandemis group summary tree of phylogenetic analyses. Clades are numbered in bold to the right of their respective nodes. Numerical values above and below branches are maximum parsimony bootstrap, maximum likelihood bootstrap, and Bayesian posterior probabilities, respectively (COI above, COI+28S rDNA below). "+" = a clade with less than 50% bootstrap support or posterior probability, "0" = a clade is part of a polytomy, and "-" = a clade contradicted by tree topology.
FIGURE 3 in Phylogeny of the tribe Archipini (Lepidoptera: Tortricidae: Tortricinae) and evolutionary correlates of novel secondary sexual structures
FIGURE 3. Summary tree of phylogenetic analyses. Clades are numbered in bold to the right of their respective nodes. Numerical values above and below branches are maximum parsimony bootstrap, maximum likelihood bootstrap, and Bayesian posterior probabilities, respectively (COI above, COI+28S rDNA below). "+" = a clade with less than 50% bootstrap support or posterior probability, "0" = a clade is part of a polytomy, and "-" = a clade contradicted by tree topology. Bolded terminal taxa are expanded in the following trees. Specimen photos are absent when no specimens were available for examination.
FIGURE 7 in Phylogeny of the tribe Archipini (Lepidoptera: Tortricidae: Tortricinae) and evolutionary correlates of novel secondary sexual structures
FIGURE 7. Clepsis group summary tree of phylogenetic analyses. Clades are numbered in bold to the right of their respective nodes. Numerical values above and below branches are maximum parsimony bootstrap, maximum likelihood bootstrap, and Bayesian posterior probabilities, respectively (COI above, COI+28S rDNA below). "+" = a clade with less than 50% bootstrap support or posterior probability, "0" = a clade is part of a polytomy, and "-" = a clade contradicted by tree topology. Specimen photos are absent when no specimens were available for examination.
Figs. 19–27. Eutyphlus species, male secondary sexual characters. 19 in Revision ofEutyphlusLeConte (Coleoptera: Staphylinidae: Pselaphinae), with Description of a New Species and Phylogenetic Placement within the Tribe Trichonychini
Figs. 19–27. Eutyphlus species, male secondary sexual characters. 19) Modified mesotrochanter, mesotibia, and metatrochanter, A) Mesotibial spine on E. dybasi and E. spiralis, B) Mesotrochanteral flange on E. dybasi, C) Metatrochanteral spine on E. dybasi and E. spiralis; 20) E. prominens, ventrites, Type I; 21) E. prominens, ventrites, Type II; 22) E. prominens, ventrites, Type III; 23) E. prominens, ventrites, Type IV; 24) E. prominens, ventrites, Type V; 25) E. prominens, ventrites, Type VI; 26) E. spiralis, protibial spine; 27) E. schmitti, ventrites.
Figure 5 in The evolutionary position of Lestoniidae revealed by molecular autapomorphies in the secondary structure of rRNA besides phylogenetic reconstruction (Insecta: Hemiptera: Heteroptera)
Figure 5. ML phylogram inferred from the sequences of 18S and 28S rDNAs. Numbers at branch nodes are bootstrap values.
Figure 4 in The evolutionary position of Lestoniidae revealed by molecular autapomorphies in the secondary structure of rRNA besides phylogenetic reconstruction (Insecta: Hemiptera: Heteroptera)
Figure 4. Bayesian phylogram inferred from the sequences of 18S and 28S rDNAs. Numbers at branch nodes are posterior probability values.
Figure 1 in The evolutionary position of Lestoniidae revealed by molecular autapomorphies in the secondary structure of rRNA besides phylogenetic reconstruction (Insecta: Hemiptera: Heteroptera)
Figure 1. Secondary structure model of 18S rRNA of a pentatomoid Lestonia haustorifera (Lestoniidae) (GenBank accession number: KT188471). LVRs are indicated in red. The unique sequence length of some LVRs of various pentatomoid families is shown by blue arrows. Base pairing is indicated as follows: standard canonical pairs by lines (C-G, G-C, A-U, U-A); wobble GU pairs by dots (e.g. G. U); AG and AC pairs by open circles (e.g. A ○ G, A ○ C); other noncanonical pairs by filled circles (e.g. U ● U). AL, Acanthosomatidae + Lestoniidae; Tha, Thaumastellidae.
FIGURE 4. Secondary structures for the D1–D1 in Pseudoaliinostoc sejongens gen. & sp. nov. (Nostocales, Cyanobacteria) from floodplain soil of the Geum River in Korea based on polyphasic approach
FIGURE 4. Secondary structures for the D1–D1ʹ and Box-B in conserved regions of the 16S–23S ITS. (A, H) Aliinostoc morphoplasticum; (B, I) A. magnakinetifex; (C, J) A. catenatum; (D) Pseudoaliinostoc soli; (E) P. tiwarii; (F, K) P. constrictum; (G, L) P. sejongens.
FIGURE. Inflorescence of Hylaeaicum. A. H. myrmecophilum (Leme 2555). B. H. levianum (Leme 5639-A). C–D. H. wurdackii (Leme 2567). C. Top view. D. Outer primary fascicle, with secondary fascicles indicated by an arrow. E–G. H. eleutheropetalum var. eleutheropetalum (Leme 4491). E. Top view. F. Secondary fascicles indicated by an arrow. G. Outer primary fascicles, with secondary fascicles indicated by an arrow. H. H. margaretae (Leme 2331). I. H. tarapotoense (Leme 1977). J. H. aff. myrmecophilum (Leme 3487). K. H. pendulum (Leme 1979). in Re-evaluation of the Amazonian Hylaeaicum (Bromeliaceae: Bromelioideae) based on neglected morphological traits and molecular evidence
FIGURE. Inflorescence of Hylaeaicum. A. H. myrmecophilum (Leme 2555). B. H. levianum (Leme 5639-A). C–D. H. wurdackii (Leme 2567). C. Top view. D. Outer primary fascicle, with secondary fascicles indicated by an arrow. E–G. H. eleutheropetalum var. eleutheropetalum (Leme 4491). E. Top view. F. Secondary fascicles indicated by an arrow. G. Outer primary fascicles, with secondary fascicles indicated by an arrow. H. H. margaretae (Leme 2331). I. H. tarapotoense (Leme 1977). J. H. aff. myrmecophilum (Leme 3487). K. H. pendulum (Leme 1979).
Figure 4. Samples from secondary forest were extrapolated from 13 in Saproxylic fly diversity in a Costa Rican forest mosaic
Figure 4. Samples from secondary forest were extrapolated from 13 to 16 samples. Dotted lines represent upper and lower 95% confidence intervals.
FIGURE 8. Putative secondary structures for 22 in New additions to the Chinese Anelytra Redtenbacher, 1891 (Tettigoniidae: Conocephalinae; Agraeciini)
FIGURE 8. Putative secondary structures for 22 tRNA genes of the A. (A.) obtusa mitochondrial genome.
Supplementary data: "Secondary control activation analysed and predicted with explainable AI"
<p>This repository contains processed data and result files for the paper <a href="https://arxiv.org/abs/2109.04802">Secondary control activation analysed and predicted with explainable AI</a> . The code for producing the processed data and the results is <a href="https://github.com/johkruse/XAI-for-aFRR-activation">available at github</a>.</p> <p><strong>Data</strong></p> <p>The data folder contains the feature and target data used to train the ML model. The data for Germany comprises the following folders and files:</p> <ul> <li><em>raw_input_data.h5</em><strong> </strong>:<strong> </strong>The aggregated external features without additional engineered features.</li> <li><em>inputs_<model_type>.h5 </em><em>:</em> The input features for the different model types used in the paper including the engineered features. Depending on the model type, the input files also contain the IGCC features.</li> <li><em>outputs.h5 </em>: The activated aFRR volumes in Germany.</li> <li><em>version_2021-08-20</em>: Folder containing the training and test sets used for the results.</li> <li><em>documentation_of_data_download</em>: Information files concerning the ENTSO-E raw data and its aggregation.</li> </ul> <p>In addition to the German time series, the data folder contains the raw input data for the remaining IGCC states. Note that the results contain more model types as actually discussed in the paper.</p> <p><strong>Data sources</strong></p> <p>The data for input features (<em>raw_input_data.h5</em> and <em>input_<model_type>.h5</em>) is derived from ENTSO-E Transparency Platform data [1]. The target data (<em>outputs.h5</em>) is based on publicly available data from the German Transmission System Operators (TSOs) [2].</p> <p><strong>Results</strong></p> <p>The result folder comprises the results of hyper-parameter optimization, model prediction and interpretation via SHAP. The model type, the loss function to train the model and the data set for prediction/interpretation were varied.</p> <ul> <li><em>cv_results_<model_type>_<loss_function>.csv</em> : Performance results for each combination in the hyper-parameter grid search.</li> <li><em>cv_best_params_<model_type>_<loss_function>.csv</em> : Hyper-parameters used in the final (optimized) model.</li> <li><em>shap_values_<data_set>_<model_type>_<loss_function>.npy</em> : First-order SHAP values calculated on different data sets: The train set, the randomized test set and the continuous test set.</li> <li><em>y_pred_<data_set>.h5</em> : Predictions of daily profile predictor and Machine Learning models.</li> </ul> <p><strong>Disclaimer</strong></p> <p>The data might be subject to copyright or related rights. Please consult the primary data owner.</p>
Effects of dominance and female presence on secondary sexual characteristics in male tufted capuchin monkeys (Sapajus apella)
<p>Alpha status may lead to physiological changes that enhance secondary sexual characteristics, which may serve as competitive signals to conspecific males, sexual signals to females, or possibly a combination of both. Here we report measurements of secondary sexual characteristics in captive dominant and subordinate male tufted capuchin monkeys (<i>Sapajus apella</i>) with varying access to females. An adult male (who had previously been subordinate while housed with other males) was paired with an adult female, and then this male-female pair was introduced into a room that housed three other male-male pairs with stable hierarchy arrangements. We analyzed weight, body measurements, facial photographs, and hair cortisol before, during, and after introducing a female into the room. While there were no differences in weight or measurements between alphas and subordinates without physical access to the female prior to or during the female's presence, we found that direct access to the female resulted in dramatic changes in facial appearance, body size, and testicular volume in the male who was paired with her. Overall, we found little evidence to suggest that alpha males advertise their status within all male groups via sexual secondary characteristics. However, direct physical access to females appears to trigger the development of such characteristics in alpha males. It remains of continued interest to identify the endocrine mechanisms responsible for the development, and possible loss, of secondary sexual characteristics.</p>
FIGURE. Tolypocladium cucullae (HKAS 55588, holotype). a, b. Material of Tolypocladium cucullae. c. Ascostromata. d. Fertile head of ascostroma. e. Vertical section of stroma. f. Peridium. g–j. Asci. k. Apical cap of asci. l–o. Secondary ascospores. Scale Bars: d = 5 mm, e = 100 µm, f = 50 µm, g–j = 200 µm, k, l–o = 20 µm. in Yunnan-Guizhou Plateau: a mycological hotspot
FIGURE. Tolypocladium cucullae (HKAS 55588, holotype). a, b. Material of Tolypocladium cucullae. c. Ascostromata. d. Fertile head of ascostroma. e. Vertical section of stroma. f. Peridium. g–j. Asci. k. Apical cap of asci. l–o. Secondary ascospores. Scale Bars: d = 5 mm, e = 100 µm, f = 50 µm, g–j = 200 µm, k, l–o = 20 µm.
FIGURE 3. Croton ceanothifolius. A. Habit. B. Staminate flowers. C. Pistillate flower with bifid styles. D. Leaf with impressed primary and secondary veins. E. Nearly mature capsules. C. celtidifolius. F in Croton (Euphorbiaceae) of the Brazilian state of Paraná: an annotated checklist, species distribution, and identification key
FIGURE 3. Croton ceanothifolius. A. Habit. B. Staminate flowers. C. Pistillate flower with bifid styles. D. Leaf with impressed primary and secondary veins. E. Nearly mature capsules. C. celtidifolius. F. Habit (plant in the center with some orange leaves). G. Amber-colored latex. H. Stipules. I. Detail of acropetiolar stipitate nectary glands. J. Inflorescence with lower bisexual cymules. K. Pistillate flower with tetrafid styles. Photos: A.P.N. Pereira.
CONSOLE_WP3_Task3.1_ Analysis of secondary data_FI_2022.11.03_v01
<p>Data collected from Finnish forest owners</p>
A Putative New Role of Tv-PSP1 Recognizes IRE and ERE Hairpin Structures from Trichomonas vaginalis. Figure S1. Tv-PSP1 crystal packing. Figure S2. Tv-PSP1 secondary structure and general topology.
<p>Figure S1. Tv-PSP1 crystal packing. Crystal packing of the hexagonal space group P63 with cell dimensions<br> a=81.9 Å, b=81.9 Å, c=129.3 Å, and γ=120°. A) Trimer A in Grey surface is around the threefold axis symbol. B)<br> Trimer D in blue steel color, this trimer is under Trimer A on the same threefold axis. The trimer D on the final<br> structure is not visible in a large part of the structure, only are visible the fragments in contact with monomer A,<br> here was built a complete Trimer from previous refinement process to illustrate the position on the crystal.<br> C)Trimer B in green color is around the threefold axis symbol in the symmetric object of the twofold screw axis<br> of the cell. D)Trimer C in orange color is around the sixfold axis symbol. Figure was made in VMD program [39]. ID PDB: 7KGC.</p> <p> </p> <p>Figure S2. Tv-PSP1 secondary structure and general topology. A) Tv-PSP1 secondary structure of the<br> asymmetric unit monomers obtained with VMD program [39]. Marginal differences are observed on the L1 and<br> L7. B) General topology of the monomer A structure. Beta strands in yellow color, 3-10 helixes in blue color, alfa<br> helixes in magenta color, turns and coil in green color.</p>
Percutaneous Electrochemotherapy (ECT) in Primary and Secondary Liver Malignancies
<p>We uploaded the original file of figures of the manuscript Percutaneous Electrochemotherapy (ECT) in Primary and<br> Secondary Liver Malignancies accepted on Diagnostics journal (https://www.mdpi.com/journal/diagnostics).</p>
Lidar and model data for manuscript submitted to GRL "First Simultaneous Observation of Secondary and Tertiary Gravity Waves by Lidar and Investigation with HIAMCM simulations"
<p>This dataset contains the lidar and model data used in the manuscript submitted GRL titlled '<strong>First Simultaneous Observation of Secondary and Tertiary Gravity Waves by Lidar and Investigation with HIAMCM simulations'</strong></p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.